Array 1 165662-168039 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 165662 48 100.0 29 ................................................ GCATATCTGAATAAACTAAACAACAAAAA 165739 48 100.0 30 ................................................ TATTTTCAGTGTAGGTCATGATTTACCCCA 165817 48 100.0 30 ................................................ TGTAGTTAATACCATTATCGCTAAAATCAA 165895 48 100.0 29 ................................................ AATAATACTTTGCAATTGTCAATAGAAAA 165972 48 100.0 30 ................................................ AGCATTTGGAATTTCTTTGAGTTGTGTTTC 166050 48 100.0 30 ................................................ TAATTTGATTCGCAATTGCACCGCTAGACG 166128 48 100.0 30 ................................................ TAGATATTTTTGACAATTTGGATTGTATCT 166206 48 100.0 30 ................................................ TTTCTTTTGTGTAGTTCATGGTTTTATCCT 166284 48 100.0 30 ................................................ AGGTCTGCTGGTCTTCCGGGAAGAGCATCT 166362 48 100.0 29 ................................................ GGAACGCGCACCGTTTGACGCAAAGAAAG 166439 48 100.0 29 ................................................ AAAGTTTCTCCCAATAAACGCTACAAAGA 166516 48 100.0 30 ................................................ GCTGGCCCTCTTGGTGCTATGGCCGCAGGC 166594 48 100.0 30 ................................................ GCAAGTATGGTAATATGTATGACCACGGCG 166672 48 100.0 30 ................................................ AGTATTCGGACTATATCGGGCGGGCTCGTT 166750 48 100.0 30 ................................................ TACAAAGATAGGATGTTGCATATTTATTAA 166828 48 100.0 30 ................................................ TTAATTTCGTCCACACCGTCAAACCTAAAC 166906 48 100.0 29 ................................................ AGAAGAGCGAGTTCACGCCGTTGTGGGTT 166983 48 100.0 30 ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 167061 48 100.0 29 ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 167138 48 100.0 30 ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 167216 48 100.0 29 ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 167293 48 100.0 30 ................................................ GATTAACGTTACAATCCTCCACCTTTCCTT 167371 48 100.0 29 ................................................ GGGTTGAGTGGTCCAGCTTGTTATCTACT 167448 48 100.0 29 ................................................ GGAAGGCGATACGGATAAGTTGAACGAAA 167525 48 100.0 30 ................................................ AGTATCATGGCAATATTCTTTCGGGGCATT 167603 48 100.0 30 ................................................ GCTCAGCAGCACGAAATTACTAATAGTCCT 167681 48 100.0 29 ................................................ TATCGACTTGCGACAACGAAGCTCTTGAT 167758 48 100.0 30 ................................................ AATCTGTAAGCACTATTGGAAATATGGTCT 167836 48 100.0 30 ................................................ TGCTTGACGAAGTTGGCAATGAATGGTACA 167914 48 100.0 29 ................................................ TAAAATCCCGACGTATGTATTCATCGACG 167991 48 87.5 0 ................................A....A.G...G.CC. | G [168033] ========== ====== ====== ====== ================================================ ============================== ================== 31 48 99.6 30 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Left flank : AGCTTCGCTTGCCAAGTGTTATTTAGGAACAACAAGGAAATTGCTCTATCCGGAGGTGTAGGATGGACCGATTTAGCGAGTACAGAATTATGTGGATTTTGTGTTTCTTTGATTTGCCGACAGAAACGAAAATTGAGCGGCAACGGCACAGCGAATTTCGCAAAAATCTGTTAAAAGATGGATTTTCAAGATTCCAATTATCCATATATGTTCGGCATTGCGCTTCTGTGGAAAATGCAGAAGTTCATATTGCTCGAGTAAAGAGTTTTATGCCGCCAGATGGTTCAGTAAGCATTCTCTGTATCACGGACAAGCAGTTCGGGAAAATCCAGGTTTTCTACGGTCGAAAGGAAAAACCGAAGCCAAAATCAACGGGGCAATTAGAGCTTTTCCTATAAAAAACGTTCAAAAACAAGAAAAAATCGACCCCAAAAGGTCGATTTTTTCTTTTCGCAATGATACATCTAACTCGTTCATAGCTGTATAGTTACAACGAATCA # Right flank : CAAACAGCGAGGAAGGGGGCTATGTCAACTGCAATATAGATTATTTAAAGAGAAAAGGAGATGCCCCGTCAAGCGGGGCATGACATCAGGGCGAGTGGCTAAGCTAAGCCGGGGCGTTGCGGGGCGGCGTCTGAGCGCCCGCATAGAGAGGGTGATGGAAGACTCGGCAACCCGCTTTTTGACGAAAGGGGTGTACGCTCAAAGGCGTACATGACAATCCGAAGTGACTAGGTTGCCGAGGCTGCAATCAGGGGGATTCCTCCCCCATCCTTCATAAGCTATCAAAATTTTCAATAACACATTTTGACATTCCTTTTTATACCTTAAAATGCATCGGACGAAACTACTAATAAAGTAATTCTATTAGTAGCGATATTTTTTTAGTATTGGACAAAGGGTTTTGCATTCTCTATATTTGTCTCTCAAAAATGGGAGACATTCTATGGCAGTTGATTATTCTACTCTTAAAAAGGGCGGCTGGATGCGCCAGAAGCAGAAGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1895255-1895839 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 1895255 37 100.0 36 ..................................... TTAAACTCTTTTGTTGCTTTGAAGGGATTAAAATAG 1895328 37 100.0 37 ..................................... TTTCATATTGTTACCTCCTAGAATTTTTCTATTCCCT 1895402 37 100.0 37 ..................................... TTTGCAATCTTTGCCATGATCTTGGTCTTAGTGTTTT 1895476 37 100.0 36 ..................................... AGAACACGCATTTCAGTATCGAGCCTTTCCTTGTCA 1895549 37 100.0 38 ..................................... CATCACTCATCTTTTTGAGTACCTCTGCAGGTACATCA 1895624 37 89.2 142 ...............................GGCA.. CTGGCGGTTGCCTGCTTGTCGGCTCGGTCATGCCCACGCAAGCGTGTTCGCGACGCTCGCCTCTGTCGCAGTAAGACTTGGAACTCTCGCAAGAGAGATTAAGACGGAGCTGGTTCCCATTCAGCAGATTCAATTGCTGATC 1895803 37 86.5 0 ..............C................GGCA.. | ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 7 37 96.5 54 CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Left flank : TCGGGTGCGGCTGTTGCCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACTCCCTGAAAAGCATTCCTCTCGCAAGAGAGATCTTTTTTCAAAAAACAGGTTGACACTTTTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTATTTGGCAATTGAGAGCGCGGAGCCTAAAAATTCCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTTGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACT # Right flank : CCTAGCGGCTGCCAGCTTGTCGGCTCGGTCATGCCCGTGCAAGCACGGTCGCGACACTCGCCTCTGTCGCAGTAAGACTTGGAAAGCGTAAAGCACTAACGTCATTGCAAGGAGTATAACGACGCGACGATCCACAACTCTCGCAAGAGAGTTTTTTTCAAAAATCTGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCTCGGTAAAATCGGGGCCGTTTTTTTTATGTGGTTGACGTTCTTCTATATCAAAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAATATGAAAACTATTCAGCAAAGCATTTGGACTATTCCGTGGGGCGACATCCCGACTCCCCCGAAAATTTCATTTTTTGAGTCGGCGCTTTCATTCTAAAACGATAAAAACAGAAGGGTGCAATGTTGCACTGTCAAACCTT # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1896758-1897403 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================================================================================ ================== 1896758 26 100.0 48 .......................... TAAGACTACTTTGCTTCGCAGCGTTGCTTATGGAAGAGCGTACCCCTG 1896832 26 96.2 49 .........A................ TAAGACCTCTACGCTTATTATAGATAATGAAGTTCTTAGGTTCTCCCTG 1896907 26 96.2 48 .........A................ TAAGACCCTTACGCCAGTAAAGTGCAGTGTTAACGTTAAACAACCCTG 1896981 26 100.0 112 .......................... GGCAACCTTGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACCAAGATGTCATTCTGGAGCCGAAGGCGAT 1897119 26 80.8 49 .G..T.CA.A................ TAAGACTTTTCTAGCCCCTCCGCTATATGCTTTTCGAACCTTTCCCCTG 1897194 26 100.0 80 .......................... TGCAGCTACGCCGCCAAATGGTCGGTTCGGTCATGCCGGAATGCAAGCATTCCGTCGCGACGCTCACCTTATCCATTTGT 1897300 26 80.8 50 ..G.CTC..T................ TAAGACTTCTTGAGACGACGCACATACTCGCCTACGTTATGGACACCCTG AA [1897310] 1897378 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================================================================================ ================== 8 26 94.2 62 AAAAGCATTCCTCTCGCAAGAGAGAT # Left flank : CGAAAATTTCATTTTTTGAGTCGGCGCTTTCATTCTAAAACGATAAAAACAGAAGGGTGCAATGTTGCACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTGTCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTAATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTCTCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAATTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGTGTGCAGTTGTTACCAACGGCCGCCTGGAGCCCTTTATTTATGCGGGTTCCAGAGGGGTACTCCCCTG # Right flank : TGACAATCTTCGATTGTCTGCTCCTAGGCTCGGCAATGGAAATGCAAGCATTTCCGCTGCTCTCGTCTTACGTCGCAGTGCGAGCCTGGCGGTTGCCTGCTTGTCGACTCGGAAATGGTCCCGCAAGCGTGTTCGCGACGCTCGCCTCTGTCGCAGTAAGACTAAAACAGGGTCCGTGAACCTGCCGAAGGGCCGCGAAGACTCTCGCAAGGGAATTTTTTTCAAAATTCTAGTTGACACTTTTGTTGTGCATAGCGATATAGTGTATGTTGAGTGGCTCCGGTGAAAACCGGGGCCGTTCGTGTTTTTGGTGGTTGACATTTTCCCAAAACGAAAAGACATAAAGGTTGTAGGGGTGCAAAGCCCCGGACACAACTCAAAAAATGGGGAATCTATGCTATGCATTTATACGTGACCGAACAGGGGACCCGCCTGGGGAAAAATGGCGGGCATTTGGTGGTCCAGCGCGACGGCTGTACCATAGACGATATTCTTTTGTC # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.66, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAAGCATTCCTCTCGCAAGAGAGAT # Alternate repeat : AAAAGCATTACTCTCGCAAGAGAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1899825-1899367 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================================================================================================================================== ================== 1899824 27 81.5 148 G.................TT...C..C AGAGAAACATGGCGTTCCCGGCACAGGACCGAGATGACATTGTGAGGTATATTCCGCTTTTCTTTAGTCTTACTGCGACAGAGGCGAGCGAAGCGGGACCGCTTGCGGGACCATTTCCGAGCCGACAAGCAGGCAGCCGCCAGGCTGC TCT [1899804] 1899646 27 96.3 47 .....................G..... CAGGGGATGAAGCCTATTCTCCGGTTGTCGAGCTCCATTTGAGTCTT 1899572 27 85.2 79 .................A..G.G.C.. ACAAATGGATAAGGTGAGCGTCGCGACGGAATGCTTGCATTCCGGCATGACCGAACCGACCATTTGGCAGCGTAGCTGC TT [1899554] 1899464 27 100.0 44 ........................... CAGGGGGAGAAGAAGGTTGGGGCCAAAAGAAGGATCGACGTCTT 1899393 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ==================================================================================================================================================== ================== 5 27 92.6 80 AATCTCTCTTGCGAGAGGAATACTTTT # Left flank : CCCCAATTGACAACAAAAAAAGCCCGGTTTTTGACACCGGGGTTTAACGCTTTAGTTTGAAATATCATTCGTTGATTAGCAGTGTTTTGCAAGGATTTCGGTTTCATCGACAGATGTGACAATCGGTCTCATTGAGGTATCCTCCGTTAAGGTTTGACAGTGCAACATTGCACCCTTCTGTTTTTATCGCTTTAGAATGAAAGCGTTGACTCAAAAAATGAAATTTTCGGGGGAGTCGGGATGTCGCCCCACGGAATAGTCCAAATGCTTTGCTGAGTAGTTTTCATATTTTACCTCTTTTTTCCGAACGCCCCATGCGCCCGACAACCATTATATCACTTTGATATAGAAGAACGTCAACCACATAAAATAAAAAACGGCCCCGATTTTTACCGGGACCGCCAACCTCAGGAGTAAAATGTTATGCCGAACGTAACGAGCGTCTGACATAACATATATCGACAAAGACAACAAAAGTGTCAACCTGTTTTTTGAAAAAA # Right flank : CAGGGAGTACCCCTCTGGAACCCGCATAAATAAAGGGTTCCAGGCGGCCGTTGGTAACAACTGCACGCAAAAGCACTTAATAGAATTTTAATTTTTCTTTACAAAACCCTAAAAAGCACCCGAAATTGGCGTTTTTAGCTCAATTTCGGCATGGTAACACGAATGTTGTCTGTAACAAATGTCAAGTTGCGACCCGGCCATGCAGACCGGACGCCTTAAATTTACACTTTTTTGAGTGAAAATGGGAAATTTCTGGGTCCGCTACAGCACCTTGAAGGCGGGATTTTCAATACGCTTTCCGCAACCGACTATACGCACGCCTTCGTCAGCCCGCGCGTCAATCGGGTACAGCCTCACCGAATCCGTATCAGGATCAATAATCTTTTCGGCCTCGTTTTCAAAACTCGCCACCTGCACCGAGTCCAAGAACGACTCGAATACCGACTTCTGCACACGAAACCCAGTCGCAAGGCACAGCTTAACCATCCTCCCGCGGCGGC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTCTCTTGCGAGAGGAATACTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 1900584-1901045 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================================================== ================== 1900584 32 100.0 42 ................................ AAGACTGAAGATTATTAGTCACGATAGTATGACGTTATTATC 1900658 32 100.0 72 ................................ GCAGCCTACGGCTGCCTGCTTCTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCG 1900762 32 62.5 42 .AG.A.G.CTTGGAGT................ AAGACTATCCAGTACCACGTACATTTGCATCCCAAATTGTAG 1900836 32 96.9 146 ..............C................. GCAACCTGGCGGTTGCCTGCTTGTCGGCTCGGTCATGCCCACGCAAGCGTGTTCGCGACACTCGCCTCTGTCGCAGTAAGACTTAGAACTCTCGCAAGAGAGATTAAGACTTTATTCTCAGGAGGCGGAATTCAGCTGTTATCCCG 1901014 32 93.8 0 ........T............T.......... | ========== ====== ====== ====== ================================ ================================================================================================================================================== ================== 5 32 90.6 76 CCCTGAAAAGCATTACTCTCGCAAGAGAGATT # Left flank : TCCCGACTCCCCCGAAAATTTCATTTTTTGAGTCAACGCTTTCATTCTAAAGCGATAAAAACAGAAGGGTGCAATGTTGCACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTGTCACATCTGTCGATGAAACCGAAATCCTTGCAAAACACTGCTAATCAACGAATGATATTTCAAACTAAAGCGTTAAACCCCGGTGTCAAAAACCGGGCTTTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTTCCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTCGGGTGCTTTTTAAGGTTTTGTAAAGAAAAATTAAAATTCTATCAAGTGCTTTTGTGTGCAGCTGTTACCAACGGCCGCCTGGAGCCCTTTATTTATGCGGGTTCCAGAGGGGTACT # Right flank : TGCAACCTTACGGTTGCCTGCTTGTCGGTTCGGAAATGGTCCCGCAAACGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACTATGGAACTCTCGCAAGAGAGATTAAGACGAATCTCTGAAAAGGATCATTCTTTATTCCCCTTTACCCTGAAAGGCGCTGCTCTCGCTTTACGTCGCAGTGCGAATCTCCGGCTGCCTGCTTGTCAGCTCGGAAATGGTCCCGCAAGCGGTTCCGCTTCGCTCGCCTCTGTCGCAGTAAGACTTGGAGCTCTCGCAAGAGAAATCTTTTTCCCCAAAAAACAGGTTGACACTTTTGTTGTCTTTGTCGATATAATTCATGTCAGGCGCTCATTACCGTCTGGCTGAACATATGTACCTCCTGTGGTTGGCGGCTCCGGTGAAAATCGGGGCCGTTTTTTATTTTATGTGGTTGACGTTCTTCTATATCAAAGTGATATAATGGTTGTCGGGCGCGTGGGGCGTTCGGAAAAAAAGAG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTACTCTCGCAAGAGAGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 1902105-1902762 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================================================================================== ================== 1902105 32 100.0 42 ................................ AAGACTCATTACGAGCCAGAGCTGTCATCGGGCCGAGGTTCC 1902179 32 100.0 41 ................................ AAGACTTGAGTCTGATTCCATTTTCATAGAAGAGACTTTCG 1902252 32 100.0 42 ................................ AAGACGCACTTGATTTAAAGTTAACATTCTTTACAAATGCAA 1902326 32 100.0 41 ................................ AAGACTAACTCCTTCAGATCCTTTAAGAAGGAATTCTTTCC 1902399 32 100.0 42 ................................ AAGACTCCCCACATGCGGATCTTCTCATTGAGAAAATCGTCA 1902473 32 100.0 44 ................................ AAGACCCAGATGTAAAGTAGCCGTAAGCGAATCCACCACTATGT 1902549 32 93.8 150 ..............A................G GCAGCCTAGCGGCTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACCTGGAACTCTCGCAAGAGAGCTTAAGACTGAAATTTCACCTGGGCATACGGTACTCATAATTATTTGC 1902731 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================================================================================================================================== ================== 8 32 99.2 58 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATT # Left flank : TCCCCCGAAAATTTCATTTTTTGAGTCGGCGCTTCCATTCTAAAAAACGATAAAAACAGAAGGGTACAATGTTGCACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTATCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTGATCAACGAATAATATTTCAAACTAAAGCGTTAAACCCCGGTGTCAAAGCCGGGCCTTTTTTGTTGTCATATGGGTATGCGGAGCCTAAAATTTCCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGTTAAAAACACCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAATGGCCGCCTGGAACCCTTTATTTATGCGGGTTCCAGAGGGGTACT # Right flank : TGCAGCCTACGGCTGCCTGCTTGTCGGCTCGGTCATGCCCACGCAAGCGTGTTCGCGACGCACGCCTCAGTCGCAGTAAGACTAGGAGCTCTCGCAAGAGAGATTGCAGCTACGCTGCCAAATGGTCGGTTCGGTCATGCCGGAATGCAAGCATTCCGTCGCGACGCTCACCTTATCCATTTGTAAGACACTTTAACTCTCGCAAGAGAGATTAAGACTTACGTCTGTAGAGACTTTTAATCCATCTCATATCCCCTGAAAAGCATTCCTCTCGCAAGAGAGATCTTTTTTCAAAAAAAACAGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTATTTTATGTGGTTGACGTTCTTCTATATCAAAGTGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAAT # Questionable array : NO Score: 4.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-1.69, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 7 1903817-1904405 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================= ================== 1903817 37 100.0 36 ..................................... TGAGATCAATTTGATGGTTAATCTTATCCATCTCGT 1903890 37 100.0 39 ..................................... CGTATACTCTTCTTGGTGCAAAGAAGAAGGAAAATACGG 1903966 37 100.0 38 ..................................... TCAAAGAATTTAGCTATAAGAGGTAACTGATCCCAATA 1904041 37 100.0 38 ..................................... CCTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 1904116 37 100.0 38 ..................................... CTTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 1904191 37 89.2 141 ...............................GGCA.. CTGGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCACTCGCCTCTGTCGCAGTAAGACTTGGAGCTCTCGCAAGAGAGATTAAGACTCCTGAGAAGTTTGGTTAGACGGACGCTGCTTGAAA 1904369 36 91.9 0 ..............A.................C.-.. | G [1904401] ========== ====== ====== ====== ===================================== ============================================================================================================================================= ================== 7 37 97.3 55 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Left flank : CCCCGAAAATTTCATCTTTTGAGTTGACGCATCCATTCTGAAAACCGATAAAAAGACAGAAGGGGGCAATGTTGTACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTGTCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTAATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTCTCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTTGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACT # Right flank : CCTGGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACCAAGATGTCATTCTGGAGCCGAAGGCGATAGAATCCATACTCTCGCAAGAGAGTTTTTTTTCAAAAATCTGGTTGACACTTTTGTTGTCTTTGTCGATATAATTCATGTCAGGCGCTCATTACCGTCTGGCTGAACATATGTACCTCCTGTGGTTGGCGGCTCCGGTGAAAATCGGGGCCGTTTTTTTATTTTATGTGGTTGATGTTCTTCTATATCAGAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGAGAAAAAAGAGGTAAAATATGAAAACTGTTCAGCAAAGCATTTGGACTATTCCGTGGGGCGACATCCCGACTCCCCCGAAAATTTCATTTTTTGAGTCAACGCTTCCATTTTAAAAACGAAAAGACAGAAGGGTGCAATGTTGCACTGCCAAACCTTAACGGAGGAT # Questionable array : NO Score: 4.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 8 1905308-1905491 **** Predicted by CRISPRDetect 2.4 *** >NC_013410.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1905308 37 100.0 37 ..................................... AGTTATATTTGTCAAAGTCTGGAGGAAGTGTAGTTTT 1905382 37 100.0 36 ..................................... CTTTCTAATTTCCTTACGGCGTCGTCTAGTGAATTC 1905455 37 91.9 0 ................................GCA.. | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 97.3 37 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Left flank : CTCCCCCGAAAATTTCATTTTTTGAGTCAACGCTTCCATTTTAAAAACGAAAAGACAGAAGGGTGCAATGTTGCACTGCCAAACCTTAACGGAGGATACCTCAATGAGACCGATTATCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTGATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTTCCCGTTTTCACTCAAAAAAGTGTAAATTTAAGGAGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTTGTGTTACCATGCCTAAATTGAGCTAAAAACGCCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGTGTGCAGTTGTTACCAGCGGCCGCCTGGAACCCTTTATTTATGCGGGTTCCAGAGGGGTACT # Right flank : CCTGGCGGCTGCCTGCTTGTCGGCTCGGTCATGCCCGTGCAAGCACGGTCGCGACACTCGCCTCTGTCGCAGTAAGACTTGGAGCTCTCGCAAGAGAGATTATGACCGAAGATCCTGAAGCCATTCGATGTAGTCGTCCGAAACCCTGAAAAGCGTTCGCTCTCTTGCACTTTTTTTCAAAAATCTGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATATTTACTCCTTAGGTTAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTTTTATGTGGTTGACGTTCTTCTAAATCAAAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAATATGAAAACTGTTCAGCAAAGCATTTGGACTATTCCATGGGGCGATATCCCGACTCCCCCGAAAATTTCATCTTTTGAGTTGACGCATCCATTCTGAAAACCGATAAAAAGAC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //