Array 1 6038-7401 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBED01000032.1 Klebsiella pneumoniae strain P28 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6038 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6099 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6160 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6221 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6282 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6343 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [6397] 6397 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6458 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6519 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6580 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 6641 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 6702 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6763 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6824 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6835] 6886 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6947 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 7008 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT 7069 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [7074] 7131 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 7192 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 7252 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 7313 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 7374 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 95.8 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //