Array 1 2527194-2524542 **** Predicted by CRISPRDetect 2.4 *** >NC_008609.1 Pelobacter propionicus DSM 2379, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2527193 29 100.0 32 ............................. CAATGGACTACTCCCTATAATGGTGGGTATCT 2527132 29 100.0 32 ............................. TAGCAAAAACGCACCTCGTGGGCCTACTCTGG 2527071 29 100.0 32 ............................. CCCATTGGTCAGGAGACAGCGCCACAGATCGA 2527010 29 96.6 32 ............................T CGGAGACGAAACCGACCACCATCAGGAAGTTC 2526949 29 100.0 32 ............................. AAAGCACTACGTCTGAAATACGGGCTTACTCT 2526888 29 96.6 32 ............................C CCGGCTTTACCCCCAGGCGCGCGGCGATGGTC 2526827 29 96.6 32 ............................C GGACATCATGGAGGCCGAACACCTGCTCAAGG 2526766 29 100.0 32 ............................. GGTGTTATTATTTGGGCTATTTATACGGTACT 2526705 29 100.0 32 ............................. TAAAAACACATCGGCTTTGTAACACGTAACCA 2526644 29 100.0 32 ............................. AACTCGGAAGGAAAACCCAACGGCAGTTTTTA 2526583 29 100.0 32 ............................. TTGCCCACCTGCATGTCCCCGAAAAGTTGAGC 2526522 29 100.0 32 ............................. GACCGATCCAGAGTTGGCGAAATCGGACCATT 2526461 29 100.0 32 ............................. TTGGCGGCGACGATGGCGGCTACCAGTTCAAA 2526400 29 100.0 32 ............................. CGCCTGTAGGTAATAATGATGTATTCATGTAA 2526339 29 100.0 32 ............................. TCCATCCCTGATATCCTACTGTCTGCTACACA 2526278 29 100.0 32 ............................. TCCCGCCCACAGAGCGGCACCAGTCAGTAAAT 2526217 29 100.0 32 ............................. AACGCGAGATGGCAGCGCCATTGGCCTTGAGA 2526156 29 100.0 32 ............................. CCAATCCATATAACGAATCGATATAACATGAA 2526095 29 100.0 32 ............................. ATTGTTGATAGTCGGCGTTGTCGCAACGTAAC 2526034 29 100.0 32 ............................. GTCTTCCACGGCGACACCACCAAGGACGACAT 2525973 29 100.0 32 ............................. CTGGGTCAGGACCTGGCCGACCTGATGGACAC 2525912 29 100.0 32 ............................. ACGCCTGATCATGGAATGAAGCAAGAACCAGA 2525851 29 100.0 32 ............................. GTGTTTTAGTTGGGTTGACTGATCGCGTTTCT 2525790 29 100.0 32 ............................. ATCACCCTCACCGGCACCGATCTCTGGACCGA 2525729 29 100.0 32 ............................. GTGGATGTTGCGCTCGGCACGGGTATAGCGAA 2525668 29 100.0 32 ............................. ACCAAACAACGTAGAAACCATTGACCGCAAGG 2525607 29 100.0 32 ............................. CGGGTGCTCCGAAAATCGGTCAACCGCTCACC 2525546 29 100.0 32 ............................. TGCTGGAAAACTACGCCCGCCCCATACAGGGG 2525485 29 89.7 32 ..........................GTA CGAATATTTTTTAGTTCCTGGTGTGTCCGTGG 2525424 29 100.0 32 ............................. TCCGCCGCGTGTGTCCGGGGGATGCTGGAGAG 2525363 29 100.0 32 ............................. GTGAGGTTTTCGTGATCAAGCGGTTGCTGGAA 2525302 29 100.0 32 ............................. GTCTTTCAGGCATGATTTGCGCGATTTCAAAC 2525241 29 100.0 32 ............................. TCAGGTGCGGCGGCTATCAAATGGGCGTTTGC 2525180 29 100.0 32 ............................. AGGATGTTACGGGCGATCCCATAGCCACATAC 2525119 29 100.0 32 ............................. CAGTATTCTCCTACAATGGCGATGATTCGCGA 2525058 29 100.0 32 ............................. CTGTCCTCTCTCGTTGAGAACTCTTCTGTCAG 2524997 29 100.0 32 ............................. GGGTCAACGGCTTAGCCGAGGCACCGTCCTCC 2524936 29 100.0 32 ............................. GTAAATTTAAAGGAGAAATTGCTAGGATTATA 2524875 29 100.0 32 ............................. GATGGCAAACATGGCGACAGCATACGCAGCAG 2524814 29 100.0 32 ............................. ACGTTTCCGGAATTGGCACCGAGGCGACCAGG 2524753 29 100.0 32 ............................. GCGGTTTCTTTCTTTCTTTTGGTTAAAGGTTT 2524692 29 100.0 32 ............................. TCGCTTCCAGGGTTCCCCAGGTTGAGCCGGGG 2524631 29 100.0 32 ............................. ATGTTGCAGCCGGGCTAGGAATTGACGTTGTT 2524570 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.5 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : ATGAGCAGGAAAAATGGCTTAAACGAAAAGGGGCTCAGCATGGTTTTTGCTTGCCGGAATTTCTTTCATTCGACTATTACGAATCATCAGAAGATCGGATAGACGTAAGGATTTCACAGGAGCAAATGCTGAGTGACAAGCAACATTCAGATAATTCAATTCGGGTTTTTTCGGTGCTCTACGATGGAATCCTTACTATTACCGAACCGGAGATGTTCAAGATTGCCCTGAAAACTGGCATTGGCCACGGCAAGGTTATGGGTCTTGGGCTTTTGTCAGTGGTCCCAATTTTTTGACTCATCTGAACCGGTCCGGCAAAAGGCTTTGGCTGTTGGTCTGATGCTCGTCCGGTGGGTATGAAATCCTTCTTTGACCTTCCTTTGAAGTATGGGGTCTTTCTGTCGAGTTTTGTTGCTCATCAAGGGCCGTTTAGAGGGGGAAAAGTTGGTGGCTGTTTAATGAATGAAATAGCTCAATTATTTTGAGGAAATAGAGGAAGT # Right flank : CGGGGGCTTGAGAACGAGATGACCAAGGGCCAGTAGGGGCGGCCCCATGTGGCCGCCCCCCATGGGGCCCCTCCCCACATGGCCGCCCGCTGTTCCCCATACGCACTTTTCGAACAAAAACCGGGCACTCACATGGAAACAAAAACCGGGCACCCACATGGGGGTACCCCTACGTATTTTATGTATTCGGAGACGAGAACATGGCCGAACCAATTCTTCCTCCCCTGAAACCGCTCCCCATCAAGGACCGCATCTCGGTGATCTATGTGGAGCGTGGCAACCTGGATATCCTTGACGGGGCGTTCGTGGTGGTGGATGCCACCGGCGTGCGTACCCACATACCCATCGCTACGGTGGCCTGCCTGATGCTGGAACCGGGGGCGCGGGTGTCACATGCGGCCGTTGTGCTGGCGGCGCGGGTAGGGTGCCTGCTGGTCTGGATCGGAGAGGCCGGGGTGCGGTTGTACGCGGCGGGACAACCGGGAGGGGCTCGTTCCGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189566-189823 **** Predicted by CRISPRDetect 2.4 *** >NC_008607.1 Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 189566 36 100.0 38 .................................... GCAATCATGGCCACCTCCAGCTTCCACAGATTTGCTTT 189640 36 100.0 37 .................................... GTGTCATTGTTGCCTCCCACTTCCGCAGATTCAACAT 189713 36 100.0 39 .................................... AATAAAGACAGGGGGAGTCATGGAACCACTTATTGCCGA 189788 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 GTCTCCACTACAAAGCGGCGGAGCACGCATGTCAAC # Left flank : GAGGATTGATACCTTATTGGCCCGGGTGCAGGAGTTGGAGACTGAACGCCGGCAGCTCATCGAGTCTGCCGAGGCCTCCAGGACCGAAACAGCCAAAGCACAGCTCCAGATCCAGCGCGCAGACGAAGCTACGAAGAAAGCGGAGTCGCGAGCCGAACACTTGGAGGCCCAGCTTGCAGATGCCCAAAATGGTCGGGTGGCTGCCGAAAAGGCTCAGGCAGTTGCCGAACAACGAAGCAATGATCAAAGCGAGGCATTGGTCGAGCTCAGGGCTACTTTGTTGGAAGCGAAAGGCGAAAGTAAGGCTACAATCTCGGAACAAAAGACTGAGATCCTGGCGCTCAGGAAAACCGTTGCTGATCTTGAAGGACGAGTTACTGGGTTACTGGCAGATAAATCTAGCCTGGAGAAAGCGTTGGCCCTCGAAGAGGAGCGGAATAACTTTGCCCAGAGAGCTGGTGCTATCACACCGGAAGAACAGGTAGGATAAAGGGGCTGTC # Right flank : CTGCCTATCAACTATATCCTTAAAATTACGAGATTATTCCGGGGTGATTTCGAGCACCCCTTTCAATTCGTCTATTTCAGACCACGGATTTGCAGTTAACTCTCGTTATCATACAAGAACTCGCTCCTTAAATTAAACGGTTCGAGCGGTACCGATGGTTTACGCATCACAATACCTCTCGAAAAAGATTGGCTGCGGCGTTGATGTCCTGATCAACCAGTGCCCGGCATTCTCGACAGCGCCACATGATACCGTCAACCTGCTCCATTTTCCCCTTGCAGGCGCTGCAGGTGGCTGAGGATGCTGTTGATACCTGCTCGATCTGTGTTCCGTTTTTTGCAGCAGCCTTGGATAAACATTCCCTGAGTTCCGAGATAGCCGCCTGCTGGCGCTGTTTCCTCGCGATTTTAGTAAGTTCGTTGGGCGTCCCATCACCTTTTTCCAGCAGCGCCAGACGACGCAAGTCCATTTTGTCGAGGCAAATCACATCATATACAGAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTACAAAGCGGCGGAGCACGCATGTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //