Array 1 8896-9595 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGT010000028.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
8896 29 100.0 32 ............................. CTGCGGTGCCGGGTGCCTCCCGGTGTCCTTTG
8957 29 100.0 32 ............................. CGCGACGCTCGATAACTGCCTCGATAGCTGCC
9018 29 100.0 32 ............................. CCAGCGCCTCGACTGGTCGCCAGTAACGAGAA
9079 29 100.0 32 ............................. ATCCAAAGATAGTCGCCCCGATTGCCAAATTG
9140 29 100.0 32 ............................. ACGGTATTGTTCAGATCCTGGCTTGCCAACAG
9201 29 100.0 32 ............................. GCGGCACTAACGTGATAATCACGATCAATTAT
9262 29 100.0 32 ............................. CAGTTAGATACCCGTTTTTGTTCAAACGGGCG
9323 29 100.0 32 ............................. TGACGGTCCGAAAAAAGTTGGCTGAAGAAATT
9384 29 100.0 32 ............................. GGCAGCGCGAAACGCACGCCGACACGCTGGCA
9445 29 96.6 32 ............C................ CAGCGTTATGCGACGGGTGAAGACGCCGACGA
9506 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAACCGACATTCATGT
9567 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
12 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.14,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 45043-45254 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGT010000032.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
45043 29 100.0 32 ............................. TCGGTTTGACATCAAAGAAGCCATCAATCAGG
45104 29 100.0 32 ............................. GTCTGGCCATAGGAACAAAGAAATTTGTCTTT
45165 29 93.1 32 .........A..T................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA
45226 29 96.6 0 ............................A |
========== ====== ====== ====== ============================= ================================ ==================
4 29 97.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACGCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTTTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTGAAATTTGGTAGATTTTAGTTTGAATAGAGTTATTTCAAATATTTATCTTTTTAATCAATGGATTAAATGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAAATTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT
# Questionable array : NO Score: 5.73
# Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//