Array 1 1252-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUPA01000131.1 Lacticaseibacillus rhamnosus strain 893_LRHA 374_19550_379809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1251 36 100.0 30 .................................... AGAAAGGAGACTGAACATGACTGAACCTGT 1185 36 100.0 30 .................................... TCATACACCACTGTTCAGTATTTACACTCG 1119 36 100.0 30 .................................... AACATCTTTTTTGTGTGCGGAAACATAGTC 1053 36 100.0 30 .................................... ACAATTACCCCAGATTGACCCAAAACGTCT 987 36 100.0 30 .................................... TGTGTCGATGAGTTGGCTGCAGGCGATTGC 921 36 100.0 30 .................................... GTTTCAATTGATTTGGATATAAATTTGTTT 855 36 100.0 30 .................................... TTGAATAGTGTTATTCAGGGTATGCAAGAC 789 36 100.0 30 .................................... AACTGTTGATACTCTTGAATATAAAGGGGT 723 36 100.0 30 .................................... CTGATTCGCAAAATCCCGGGCGTGGGCTGA 657 36 100.0 30 .................................... TGGCTGGCAAATTGTTGGAGATGCTTTTGC 591 36 100.0 30 .................................... GGGTTATGGGGCGTTAAGCCCATTGATTTA 525 36 100.0 30 .................................... CAAAAATGTCAATGTGTCGATGACCTGGCT 459 36 100.0 30 .................................... TTTGGCTACAAGCATGACCCAACGGCAGGG 393 36 97.2 30 ........C........................... GTGTCCAACTTAATATCTGACCACTTAATA 327 36 100.0 30 .................................... TGTCTCCCACGGAAAAGTGGCACCTAAAAA 261 36 100.0 30 .................................... TCTTCTGCCATATCCTGACCCCCTTAAAGA 195 36 100.0 30 .................................... CATAAAAGTGATTAGTGTCGATTGGCGTGC 129 36 100.0 30 .................................... ATGCTGGTGATGACACCGACAACCAGAAGG 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGATGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTAAACAAGCTGTTAGATCAGGTTAAGGACACATCGTTAGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTGGAAAGTTTTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTCATGGATAACCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CGTCGTTTAAGTTGTTTCGTCGCTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 28-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUPA01000180.1 Lacticaseibacillus rhamnosus strain 893_LRHA 495_7862_168508, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28 36 100.0 30 .................................... GCCAATTGAATAGGCCAGACAAAAATTGCC 94 36 100.0 30 .................................... TGTATTTTGTACCCCCGTGTTACTTGACGG 160 36 100.0 30 .................................... GACTTGGCGGATCTCGTTGTGCTTATTGCG 226 36 100.0 30 .................................... TGATGGTTTTGCCGTCCGGCTTGACAATCC 292 36 100.0 30 .................................... ATTTCGGCGATGGCCGTCTATCTAAAGATA 358 36 100.0 30 .................................... GGCCAGCGACTGGGTGCAACAATTACTGTT 424 36 100.0 30 .................................... CTTAGAATAGCTTTATTGATTTGGTTATTT 490 36 83.3 0 ....T..................AA.C....T...A | C,G [516,522] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GTTTAAGTTGTTTCGTCGCTCTGAGTTG # Right flank : ACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 196-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUPA01000031.1 Lacticaseibacillus rhamnosus strain 893_LRHA 84_222_4105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 195 36 100.0 30 .................................... ACGATGAAGAAACAGAAGAACTTGACGGCG 129 36 100.0 30 .................................... CGATTATTGCGCCAATCACCACTGGGTTCA 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GTTTAAGTTGTTTCGTCGCTCTGAGT # Right flank : CGTCGTTTAAGTTGTTTCGTCGCTCTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //