Array 1 398160-397534 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698982.1 Gordonibacter urolithinfaciens isolate MGYG-HGUT-02352 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 398159 31 100.0 35 ............................... GCACCACGTCGCAGGCGAACGATCCGTCGCGTGAA 398093 31 100.0 34 ............................... CGCTGAACTGCGCCAGATCGAGCGTGCATTAAAG 398028 31 100.0 36 ............................... TACAACGTGACGGCGGAGCGCCCGAGCGACGAGAAC 397961 31 100.0 34 ............................... GCTACGAAGCAGCAAGCGAGGGCCTTAAAGACCT 397896 31 100.0 33 ............................... AAGGATCGGCCCAGAAAATAGCGGAGTGCATCA 397832 31 100.0 37 ............................... CAGGGTGATGAGCTGCGTGACGCCCTGGTTCAGGCTC 397764 31 100.0 36 ............................... TGGAAACAATCTAATCAAGGTTGGGAGGAGAAAATG 397697 31 100.0 36 ............................... GTCGATTCGGACGGTGAGGCCGTTGAGGGCACCATG 397630 30 77.4 35 ......T....A-....G.AT..A....... GAGACATCTTATATTTGCGTGGAGCTGGACGAGAA 397565 31 77.4 0 ....C.....TATT........C...A.... | C [397556] ========== ====== ====== ====== =============================== ===================================== ================== 10 31 95.5 35 GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTGGTGACATACGATGTGGAAACGGCGAGCCCGCAGGGAACCTGCCGGTTGCGTCGGGTTGCGAAGATCTGCGTGAAGTACGGCCAGCGCGTGCAGAACTCGGTGTTCGAGTGCTCGCTCGATCCGGCGCAGTTCGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGGAAAGTCGAGCATGTGGGGGCGAAGGAGGCTTACGACCCGGAAGGGTTCCTGTGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAGGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCAGACTGATTGTCTAATATGAATATAATAATCAGAATATGCGTATATATGCATATTCTGACA # Right flank : GAGCACTCCCGCAGCGATTTCTTGCAGAGCTGGTTGATCATGGCGGGCTCCTAAGTGAAAACGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTCCCTCCTAAAACGATGCGGCTGTCGAGGCGCGCCCGCCCGACTCCGCGCACATGCTATGCCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCCCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCAACTATCGCCCCCGTA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 408131-407623 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698982.1 Gordonibacter urolithinfaciens isolate MGYG-HGUT-02352 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 408130 33 100.0 35 ................................. TCTCGCGGGTGTGGAATCAGGTTGCAGAAGAGACC 408062 33 100.0 36 ................................. CACACTTCCGTGTACGGCACGACGCGCTCCATCAGC 407993 33 100.0 34 ................................. GGGTACTCGGCGATGACCCTCTCGTGCGTTCGCT 407926 33 100.0 35 ................................. TCCAAGAGGCGCGGCCTCCAACGGGAGGGGAGCGG 407858 33 100.0 33 ................................. TCGAGCACGCCCAAACGAGCGATTGAAGCCATA 407792 33 100.0 35 ................................. AAGGTCTCAAAAAGGCTCACACGAGCTCTTCTAAC 407724 33 100.0 37 ................................. TGCCCTTAGTCCAGCAGCTCGGGTCGCTCATGCAGGG 407654 32 84.8 0 ..........ATA-..................T | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 98.1 35 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GATTGGCGGCCGTGCCCGGCCGTCGCAGCCCGATCCCGCTCCTTTCCGCAAACGAGGCCCGCCTTCATGTTGACCGCCCGCCTGCCGCCGCCTGCGAGCGCAAACCTTCGGAAACGCCGTGGAAGTGCAACTAGGAAGTGATGTTGAGTGCAGTATGGCCGGCGCGGCGCGGTGGCGCCATGTCCAAAAGGGCGCAGGGGGATAGGATTGGGAATTCCGTGCTGATAGGGTAAGCGGTGGGCAGGAGAGGCTTCCTTTTGGGTGATGCGAACTCGTACGTTCTTGCTTGTTCTATAATGAGCTTGAGTGAATTCGAGGTTGACGATGAGTCTGGGTGCCCTCGATCCGCTAGTGCGCGAACCCTAAGCTATGGGGATTCACACGTGAGGTTCGCGCATGAATCGAGTCATTTCGGGTCGATGGTTGCTAGGAGGGTTCTGAGGCAGCTTGAAAATTGCATATTTCATTCAATTTTATTCAGAATTATGCATGAATTGACA # Right flank : GCCGCCGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGGTGTGAATTGGGTGCGCACCGTCGCCGTATCGTGCTCTTAGCACCGGTTTCGACAGACATTTGCGCCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAGTACGGCGATCTTTCAGTTGAGGTTGTCTCGGCAGACTCGTCGGCAAGCCGCCTTCTCCCGCTGTCGTTCGATGGAGAGACTACCGACGAGCGTCTCTTCGAATGGATTCGCCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGTAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 413802-412770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698982.1 Gordonibacter urolithinfaciens isolate MGYG-HGUT-02352 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 413801 32 100.0 36 ................................ ATCGACGAATGCACGGCCGACGCCAAGAAGGCCGTG 413733 32 100.0 33 ................................ ACGGCTGTTCCGTCTGCTATGAGCAGCGTTGGA 413668 32 100.0 34 ................................ CGGCCACGACCTTGCCGGTGGCGTCTACGACGGT 413602 32 100.0 37 ................................ AAGATGCCTCCAGAAATCATCAGGAGCGGAGGAACCG 413533 32 100.0 35 ................................ ATCATGCCGTCCCACGTGTACCCCATGTCTACGCA 413466 32 100.0 33 ................................ CTGCTCGAATACCTATTGGCCCACATCCCCGTC 413401 32 100.0 37 ................................ CTGGAAGCCGGACACCTCGCCACGGCGGAACCCCGTG 413332 32 100.0 35 ................................ TCGCAGCAGGGCGGGGGAGTGAGGTGCATGCGCTC 413265 32 100.0 35 ................................ GGCGTAGTCTGCGAAGCCTTGGCGTGACCGTAGAG 413198 32 100.0 34 ................................ GAGTTTGGACGCATTGACGCTCCCGTTGGCGAGC 413132 32 96.9 34 .......................A........ GACTGGGAATCGGACGCGCCGCGCATACAGGCGT 413066 32 93.8 34 ...................T...A........ GCGCTGGCTGGCGAGCCGGCGTGGGTCCTCTGCG 413000 32 100.0 33 ................................ CAACGACTACCACGGCCCGTACGTAACCGACAC 412935 32 100.0 36 ................................ TGCGAGCCGCCCAAGGCCCCGGGGCAGCTGGTCGCC 412867 32 100.0 34 ................................ CGCTGAAGGTCGCCTCGGGAAGCGGTTCGTCGTT 412801 32 90.6 0 ...........C.........C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.8 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCTGACCCGCAGCGGCGCAACGTCGATGCCCTCATGTTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTTATCGAGAAGTGCGGCTTCGAACGCGAGGGCATCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGAGACGTACTATCTGACGCGCGTGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCCGCTCTGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGTCCAGAGGGGTAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : ATTCGAATCGTGCTCGCTAAATGGACGGCTAAACAACCCGAGAGGCATCCTCGTGCGAACTGGGTTGACGCCTCGCTCGCCGGTTCTTGGGCCGCATTGTCCCAGCTTGCCGCACTACCCGGCAGGCTCGCCTGTCTTGCCCGGCTTCCCCGGCTCGTCCGATCCCGCTGTTGCGTGCGTCTCGTTCGCCCCATACTTCTTTATCGTGCTCGCCATCATGTCAGAAGGGCGATACAGGAACGTGAAGCACTTCGGGCAGCTCACGGCGTTGTCGGGCACCGGCTCGCCGCATTCGGGGCAGCGGCCGTCGTCGATGCGCTCGCCGCTTCCGTCGGCCATGCATGCGCCGCACATCACGCAGGGGATGCACATGGGAAGCCTCCTTCCGCTTGCGGTTTCGCTATCTCCCCCGGCATGCCACCGATCTCGCTCGCGGCCTTCTCGACCTCCTGCCGTATGAGCGCGGCCAGGGAGTCATGCACCACGTTCTCGAAGGGGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //