Array 1 5368-1380 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGS01000003.1 Halomonas sp. BC1 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5367 28 100.0 32 ............................ TGCACATCAACGGTTAGCGTGCGCGTTGTGTC 5307 28 100.0 32 ............................ TGCAAAAGACATTGTTGATGCCGTCGCATAAG 5247 28 100.0 32 ............................ TGTGTGGAACCAGAAAACGGCGGGGCAGATGT 5187 28 100.0 32 ............................ AAACGTGCCGGAGTACCGCCGGGCAAGAACAT 5127 28 100.0 32 ............................ ATGCGGACCTAGACATCGTCACAGGGCGCCTC 5067 28 100.0 32 ............................ AGGCTGACTACATAGCAGCTGATCAGCTCAGC 5007 28 100.0 32 ............................ TCCCTGCTATAGCTTTGTTTTGGCCTCTACCG 4947 28 100.0 32 ............................ GCTTCGATGAACGACTCCCATAGAATCTCATC 4887 28 100.0 32 ............................ AACTGTCCGGCGCAATGGATCGCGCAGGCGCG 4827 28 100.0 32 ............................ ACGTTGTAGTGCAGCGCGGCGTCAACGGGGTT 4767 28 100.0 32 ............................ ATGCACCTCAAATAGAGGTGTAGGCAAGCCAG 4707 28 100.0 32 ............................ TAATTCCATCACATTATGCGCAGACGCAACCC 4647 28 100.0 32 ............................ GCCAGCGCTGACGACGTTGAACCGCACGGGCG 4587 28 100.0 32 ............................ CAACAGCCCGGTCAGCCGTGACGCCACCGCGC 4527 28 100.0 32 ............................ GCTGCCAGAATTTCACGCAACGGCTGACCTTC 4467 28 100.0 32 ............................ AAAGTGCATACCCGAGTGACCGGTACCGCCGC 4407 28 100.0 32 ............................ TCAACGCAAACCCCGCTGCACAGGAGTCTGCC 4347 28 100.0 32 ............................ TGGTCGGCACCGGCATCAAGCCCCAATGGGGA 4287 28 100.0 32 ............................ TGAACACCGACGCCGAGGCCCTGCGCCACCGG 4227 28 100.0 32 ............................ GTACACGGGCAGCCAATCTGGAAATTTCATTC 4167 28 100.0 32 ............................ TACCTCCGCCGCCGCCGGGCTGATGGAGGATC 4107 28 100.0 32 ............................ TGCAGGGTAGCACTGCGCGACGGCTGGGACGC 4047 28 100.0 32 ............................ AAAAATATCACCAATGAGACTAACCGCCGCAT 3987 28 100.0 32 ............................ GTGTAGCGCAGCAAGTTGTTGCTGATCATCAT 3927 28 100.0 32 ............................ AGGTACGCGCCTGTGTCTGATTCAATCCCCCA 3867 28 100.0 32 ............................ AAGTCGAACACTTCGCCTTCCACGGTTAGCAC 3807 28 100.0 32 ............................ GGCAGCCGCGTCCAAGGAAAGCACGGGCTGGG 3747 28 100.0 32 ............................ TGGAGTCGTAGATTCCGGGACACCGGCCCCTC 3687 28 100.0 32 ............................ ATGGCCCGGGTCGCCGATATCCTCTCGGGCAC 3627 28 100.0 32 ............................ GTCAGCCAGGCCAGGCAACCCAACGCCCAGCT 3567 28 100.0 32 ............................ GCCCCGAGGTGATGCGCTTCAGCCAGAACCTC 3507 28 100.0 32 ............................ GGCCAGTGCTAACCGTGGAAGGCGAAGTGTTC 3447 28 100.0 32 ............................ AGCACGCCCACCGCCAGCACGCCCACCACCAG 3387 28 100.0 32 ............................ ATGTCGACGTGGCTTCGCTTTATCGCTGGAAC 3327 28 100.0 32 ............................ AGCACGACGTAAGCGGAAATTGAACGGCCGGA 3267 28 100.0 32 ............................ AGCAGCACGCCAGCCAGCAGCAGCACGCCAGC 3207 28 100.0 32 ............................ GAAACGCGCTCGATATGGGCAAATACGCGGAC 3147 28 100.0 32 ............................ TGGCAGCGCAGCACCCTGGCAGCGCAGCACCC 3087 28 100.0 32 ............................ ACTACAAAGGCGGCAAGCACCCGGGGGAACTG 3027 28 100.0 32 ............................ GTACCAAGGGCGCAGAAAATGAAGCCACCAGG 2967 28 100.0 32 ............................ GCGCTGTTCCTGTCCGGCGTGCCACTGCTTCA 2907 28 100.0 32 ............................ ACGGACAACCACGCGATAGTGGGGCAATCCGT 2847 28 100.0 32 ............................ ACGCACCGCCAGCGAAGCCGCAAAACGTCACG 2787 28 100.0 32 ............................ TGGCAGCGCAGCACCCTGGCAGCGCAGCACCC 2727 28 100.0 32 ............................ CGGAGGACTCCGCGATGAGCGAAGCGCTGCGC 2667 28 100.0 32 ............................ CTACGGGGGGAGTGGGCTGGGGCCGCGCTGTT 2607 28 100.0 32 ............................ AGTATTGCCGAGCTGTTCAGCACCATCGACGA 2547 28 100.0 32 ............................ TCAATGTTTAGCATTTCAGGGTTGTATAAATG 2487 28 100.0 32 ............................ AACATCGTTATCGGCAACGCCACCGTTGTCGG 2427 28 100.0 32 ............................ ACCAGCAGCTTGACCGATTCGCAGGCGCGTGA 2367 28 100.0 32 ............................ CGCTAGAAGTGCTTAATCTGCTGCGCGATTAT 2307 28 100.0 32 ............................ TAGCGCTATCACTGGCCCGCAAACGCGGGCTT 2247 28 100.0 32 ............................ ATTCAGTCACGGACACCACTGAGCTAAAGGGC 2187 28 100.0 32 ............................ ATACTCACGACAAGAACTTGGTGAAAGATGGC 2127 28 100.0 32 ............................ ACATGGTTTATAACCGTGAAGCATGGGTAGCC 2067 28 100.0 32 ............................ ACGTTATAAGCAAACGCGAGCTGCATTAGCGT 2007 28 100.0 32 ............................ AGGTGCGCCGCGCATACAAAAACCAGCTATGG 1947 28 100.0 32 ............................ ATATTGCTAACGTCCGCAAAATGGTTCCGGTA 1887 28 100.0 32 ............................ ACATGAAGATGCTCGCCACGCTGCTCGACAGC 1827 28 100.0 32 ............................ GTTAATTCTGCCATGGTTGAATCTCTCTATCA 1767 28 100.0 32 ............................ AAATAGCCATCCGTACCATCCTTTAATGACCT 1707 28 100.0 32 ............................ TCCGTTTCGACGGCGCTGCTCATGCAGTAGGT 1647 28 100.0 32 ............................ GTGACCAGGTTTCATAGGCTTTCAGCGATAGG 1587 28 100.0 32 ............................ ATTCAAAAGGACGCCCAGCCCCCGGCGAAAGC 1527 28 100.0 32 ............................ CGCACCGCGTTCAGTGTCGTCCAGCTCATCGA 1467 28 100.0 32 ............................ TAGCTCGATAAAATCGTTTGGCGATGGAGTGG 1407 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 67 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGCGACTAAAGCAGCTGATGGGTATGGATTGGCTGACAGGCATGCGGGATCACACGCAGGTAAGCGAAGTGTTGGAAGTTCCTGCGGGTGCTCAGCATATCAACGTGGCGCGGAAGCAGTTCAACACGGGCAGCGAGAGCCGTGCCAAGCGTTATGCCAAACGGCACAGCATTAGCGAAGAGGAGGCAAGGAGCATTTACGCCAAAGTGGCGGCTCGGCGAATTGAGCTACCGTTTGTGCAGATCAATAGCCGATCTACTCAGCAGCGTTTCAACCTGTTTATTGAACATGGCAAACCTGCAGCGTCTTCATCGGAAGGCACATTCAGCCATTACGGCTTGAGCCCCAGCGCCACCGTGCCCTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCAGCTAAAAATCAATGGCTTAGCGGTATTGCTCCTGAAAGGGTAATGCCGCTTTTTTTGATGAAAGCTCTTTAACAATCAGCACATTAATTTTGATATACTCTA # Right flank : TAGGAGTTATGGTGATTTCTGGTGTATGGAAGCAGGTTGAAGGGGTGGCGTATCCTGTTGGTTGATCACCGCCAAGATCACAACCAACAGAGGAATGATACGCCATGTCCGAGTCTAACCTGCATGCTCTTTCACAACCAGAGGTAGCCAGCAACGACCCGTTGCACGAGTTGATCCGGCAGGGTGCCCGGGACCTGATCGCACAGGCCGTTGAGACGGAGCTGGAGAGCCTGTTGAAGCAGTGCGCGGACGTCAAGACGCCGGATGGCCGCCGTGCTGTGGTGCGTAATGGGCACCTTCCCAAACGCGCTGTTCAGACAGGCGTCGGCGACGTAGAAGTCCAGGTTCCCAAAGTCCGGGATCGCAGTGGCTCCGGTATTCGCTTCAACAGCCACCTACTGCCACCGTACCTGAAGCGCGCCCGGAGTCTGGAGGAACTGATTCCCTGGCTCTACCTGCGTGGCGTTTCCTCCGGTGACTTCCAGGAGGCCCTGAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 130836-134341 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGS01000015.1 Halomonas sp. BC1 scaffold00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130836 29 100.0 32 ............................. GCCCTATCCATAGCGTTCTTCGAGACGATGCC 130897 29 100.0 32 ............................. GCCTGGCTAGGGGGGAGAAAGTGAGCATCGCT 130958 29 100.0 32 ............................. CTGATTTCGTCGTACTTCTCAATGACGCCGCG 131019 29 96.6 32 ............................A GGGGAGGCGTCGGTGGGTGCGGGGTCGCGAGG 131080 29 100.0 32 ............................. CTCATCAATGATGTAATAGGCGCTTTGCTGGC 131141 29 100.0 32 ............................. AAGATGGTCGATGAAAGCGTAAGGTTGAAGAA 131202 29 100.0 32 ............................. TCAGCGAGTATGTCGGTCAGGTGTCGGGTAGT 131263 29 100.0 32 ............................. TGTTCTGTGCTGACATCATGGGGGTTTCACTG 131324 29 100.0 32 ............................. CGTGTCCGACGTGGCCACCCCCGACGAACACA 131385 29 100.0 32 ............................. CGCGGCAGGGCCATCAATCAAATCGATGCGCT 131446 29 100.0 32 ............................. CCCGTGCTATCACAGCGCAGCGGCGGTGCCGC 131507 29 100.0 32 ............................. CGCGCCCCGGCGATATGTGGCTGGCTCAGCTG 131568 29 100.0 32 ............................. CGTTTGGGCTCAACGGTTGCGCGTTGTGCGGG 131629 29 100.0 32 ............................. GCCGAACCGAGCTGATCGGCATACTGGAAAGC 131690 29 100.0 32 ............................. CGCGCGAGGATTGCAGCCAGTCCTGAATGATC 131751 29 100.0 32 ............................. CGAGCTACATCACGGGGCAGCCACGCTTCAGC 131812 29 100.0 32 ............................. TCGCGCCACGAGACCATGACCGAAATCGAGGT 131873 29 100.0 32 ............................. CGTTCATCGTCGGCACCGAAGCGGCCAACGGC 131934 29 100.0 32 ............................. ACACGGCGACCGATCTTGGCCATATCGCCCAG 131995 29 100.0 32 ............................. CTAAGGAGGCCCACGCGGCATGGCGCAATTCA 132056 29 100.0 32 ............................. CCCAAACGGTCGTCAATGAGCAGCTTTCTGCC 132117 29 100.0 32 ............................. CGTTTTGGTCTGTATCTCGACAATCGCCGACG 132178 29 100.0 32 ............................. CATGGCCTAGCCAGCATTAAAACGGTACTGTA 132239 29 100.0 32 ............................. CATGGGTGCTGGCCTCATCAGTCAGACGGTGC 132300 29 100.0 32 ............................. ACGACAAGGCACGGCTCGCCGACCAGCTCGAG 132361 29 100.0 32 ............................. CATGATGCCGGACTACCCGCCCGGGCGGTTGA 132422 29 100.0 32 ............................. ACGCCGGCCCTGGAGCCGTTGTTGCGATTGCC 132483 29 100.0 32 ............................. CGTATGGCGTTGCCGACCTGACGTCTGAGCTG 132544 29 100.0 32 ............................. CACGCACGGCAGCCTTGAGGCGCTCTGGGATG 132605 29 100.0 32 ............................. GCGGCGGGCTAATGCGGATCGTGTAGCCGTGG 132666 29 100.0 32 ............................. CACTCTGACTGGTACTCGACCAGCTTGTCGCG 132727 29 100.0 32 ............................. TGGCCATGGCCATCGACACCAGCGCCAACTCG 132788 29 100.0 32 ............................. CTGCACGGCCTGGTAAGCGAGCCACTGCGCAG 132849 29 100.0 32 ............................. GTTCGGGCAATGCCTTGGAACATGTTGCGAAC 132910 29 100.0 32 ............................. CCGTGGTCGTTGTCTGTGCAATGGATGATGCG 132971 29 100.0 32 ............................. ATGAGGCGTTGGGCCAGCGTATCGATTCGGTG 133032 29 100.0 32 ............................. GCGTGGTGCGGGCTATAGAGGATGCCATCCAT 133093 29 100.0 32 ............................. TCGCCCTGGTTGTCGGCGAACACTACTCTGTA 133154 29 100.0 32 ............................. GATATTCCGATTATTGAAATAGCGACGCCATT 133215 29 100.0 32 ............................. TATTAACCTCACTGAGCAGACGGCCAGTCCCG 133276 29 100.0 32 ............................. CCGAACGCCTGCCATTCGGGACTGACGGCCAA 133337 29 100.0 32 ............................. GCTTCTTCAACATGGAAGCCTGGCGAAAGTGT 133398 29 100.0 32 ............................. TCTCGCGTGTTAGCGCGTTAACCCCTTGAGTG 133459 29 100.0 32 ............................. GCGCGCCGCCGCTGTCCAGGTCTTCGGCCTCT 133520 29 100.0 32 ............................. CGATTTCAAAAGCTCTGGGCATCACAAATAGA 133581 29 100.0 32 ............................. TTTGCTGATGCTTTGCTGTTCACGGCTGCTGA 133642 29 100.0 32 ............................. TCTTTCTGGTGCAGGTCTTCGATGCGCTTGAG 133703 29 100.0 32 ............................. TTGCGCCTTGATGCCAGCGAGTGCCCAGAGTG 133764 29 100.0 32 ............................. TAATGATGGTGGGCATCGGGGAGCCGCTACTG 133825 29 100.0 32 ............................. CCGAGATCGAGAGTAAAAGGCGGCAGGCCGAG 133886 29 100.0 32 ............................. CTGCAAGAGAAAATATCGAAAGAACGCGGCAT 133947 29 100.0 32 ............................. GCGGCGCAGGGCCTCGGTGTATTCATCCGTCT 134008 29 100.0 32 ............................. ATGGTGCTGTAGGCTGCCAGGTTGCGGTGTAT 134069 29 100.0 32 ............................. CTCCTGCTCAAGCTCGTCGGCTTTCTGGATCA 134130 29 100.0 32 ............................. GCAGCGCTGCACCTGCATAGTGTTGTCGATTG 134191 29 100.0 32 ............................. CCAGCAAACGGTCGCGGACTTCATCCAGATCG 134252 29 100.0 32 ............................. AGAGACCAGAGGGGGCCGTTATACGGTGCTGA 134313 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 58 29 99.9 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGGTAGAGTTACCCGCCGCGGTGGATTGCGTGAAGCTCAATCAGCGTCTGGCGCAGCATGCCATCCACGTGGCGCCGGGCTCGCTGTTCTCCGCCTCCGGCAAGTTCCGCCAGTGCCTGCGGCTGAACTATGCGTTTACGCTCACCCCCGCCATCGAAGACGCGGTGCGAACGGTAGGTGAGTTTGCCACTGAGATGGTGGAGGAGGCGCAGGCGTCGCTCGTATAAAAACGAAGGAATCGGTCAGTTAGCACATCCAATAGCGCCCTGCGCGAGTCGTCTCCCATGAGTGAATGCGAATGCCATAAGAGAGACCTCACTTCTTGAAAACGCTGCATACGTATACGATTGCGCGAGGCTTGGTGCGATTTTTATAGGTTTCTGCAACATACTGATTTTACTGTTCTTTAATAATATTGTTCTGGTCAAAAATCGATCTAAACCGCTGGTGAACTTTCTACTGAACATTTTTATCTTGCAGAACAGCCATCTACAATTAGT # Right flank : AAGTTGAAGGGAGCGTTTTCTGGCTGAAGTGGTCCATTGTAAACATAGGAATACACTGTGGACGGCGATCAGGCTAGTGCCTCCAGGATCATCGACTGAATATTCATATCTAAGGCTGGTGTGGAGCTAGAAGTGCGTCTGGAGGTATGAATTCTTGCAAATTTATAACTCTGGGGTTATTTTTTAATTGACCAAAAGAACAAGGAGGAAGGGTGAAAAGCAAGGATGTCATCAAGGAGATGGAAGCTGATGGATGGTATCTAGATCGTGTTAGTGGGAGCCATCACGTATTCAAGCACCCTACCAAGCTCGGCAGTGTGCCCGTGCCTCATCCGAAAAAGGATTTGCCTAAGGGCACCATCCACAATATCAGAAAACTTGCGGGGCTCAGGTAGCTCGGCCGTTCAGGAGGTAACTCATGCAATATCCGGTTGCTATCGAATGGGGCGATGAACACACCGCCACCGGTATCGTCATTCCGGACATTCCCGGTGCTGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203537-205398 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGS01000015.1 Halomonas sp. BC1 scaffold00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203537 29 100.0 32 ............................. GCCGCCACCGCCTGTTCGGCGGCGCGGGATCG 203598 29 100.0 32 ............................. CTGATGGGGGGTGGCGCATGAACGCCCCGGCA 203659 29 100.0 32 ............................. ACGATTTACCGCTGGAGCCCGCTGGGCGTGAT 203720 29 100.0 32 ............................. ATCATGTGCTCATTGGGGGAATAGCGGCCGTA 203781 29 100.0 32 ............................. CCATCGGCCAGCTCGGTTTTACTGGCCTTATT 203842 29 100.0 32 ............................. AACACTTCGAGATGCAGGTGCAGTGCATCGCG 203903 29 100.0 32 ............................. CCGCCGCCGCATTGCGCCAGGCGAAAAAGCTA 203964 29 100.0 32 ............................. ACGATTTACCGCTGGAGCCCGCTGGGCGTGAT 204025 29 100.0 33 ............................. CTGATGCACAGGTACACCAGGCGTTCGATCAGC 204087 29 100.0 32 ............................. TCATTCCGCGTCGCCACCGAAGGCGCAACCAC 204148 29 100.0 32 ............................. CGGGTGAACAGCAGGGGGCCGAGGATGCTGGC 204209 29 100.0 32 ............................. CCCTCACCGAACGCGGCACGTTCATCGTCGAT 204270 29 100.0 32 ............................. GCACCCTGGAGGTGGTCGCCGAGCACTACAAC 204331 29 100.0 32 ............................. AACAGCTCGACGATGATGCCTTGGCCTTGGCT 204392 29 100.0 32 ............................. GGAGGCCCGTTCTCTAATGGCCGTTTACGTTG 204453 29 100.0 33 ............................. GCAAAGGCGCTACCATGCGCCTCTTTGAGCAAA 204515 29 100.0 32 ............................. GTGCGGCTGTTTATGTAATTGATACCGACTCT 204576 29 100.0 32 ............................. GTGGTTTTCTTGTGGTACCGCTTGTTGCAAAT 204637 29 100.0 32 ............................. GCCCGCCACCGCGCGCGCCTGCATGGCCTGAA 204698 29 100.0 32 ............................. AGTGGGCCAGTTATGGGCGGCTACTCTTCAAA 204759 29 100.0 32 ............................. CCAGCAGGCGCAGCCCAAAGGCGGACGCAAGC 204820 29 100.0 32 ............................. TCGCCCTCTTTGCCGGTTTCGTCATATTTGCG 204881 29 100.0 32 ............................. CTCTGACAGCGTGGCATCGGCACCGGCGATGC 204942 29 100.0 33 ............................. CTCAGGATCCATCGTTATGTCTGTTCGCCTATC 205004 29 100.0 32 ............................. GCGAGCGCGGTGGCCGAGGGCTTTTGCAACGG 205065 29 100.0 32 ............................. ACGCCATGACGAGCGCATGGGACGCCATCGGC 205126 29 100.0 32 ............................. CTCTTGCGCTTGGTAGGCTGCGCCACAAACCC 205187 29 100.0 32 ............................. TCGATGAGTTAGACGATACCGAGCGCGGCGCG 205248 29 100.0 32 ............................. CGCGGGGGCAATCACCTTGTAGCGTATCTGCT 205309 29 100.0 32 ............................. CTGAAGCGCCGAGGGATCGATCTGAGGCACAT 205370 29 89.7 0 .........G......C...........T | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GCGAGATCGAACCGCCACCACCGCCAGCTGACGCCGTACCGCCCGCCATCCCCGAACCGCCGTCGGTGGGCGATAGCGGCCATAGGAGTCAATGAGATGGCCATGCTCGTCGTTGTCACCGAAGCCGTGCCACCTCGATTACGCGGGCGGCTGGCCGTCTGGCTACTGGAGATTCGCGCTGGCGTGTATGTGGGCGATGTCAGTAAGCGGATTCGAGAAATGATCTGGGAACATGTCAACGTCCTGGCCGAGGATGGCAATGTCGTCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAGTTCCAGACCTATGGTGCTAATCGGCGTGAGCCCTGGGATCACGATGGGTTGCGTCTGGTACGCTTTCTGCCCGCCTAAGCTAAGTAGCTGATAATCCTAGATCTTTAAAAATGCAGTTTGTACAAAAAATAAGCAAAATCGTTGGTGGAATTTCTGCTGTCGATTTTTCTTTTTTAGATCAATTATCTACAGTTAGA # Right flank : TGGTACTCGGTTGAGCGCTACTATTGTGGGCTTGATGCAGCTCTACTTTCCGCTGGCGCTGACACTATTTTCTATTTCTGGAAAATTCCGCCAGCGCCTAAACGATGCGTTTACGCTCGTGCCTGCCATCGAAGAAGTGATGCGCACCGTCGGGAATATGGCGACAGAGATGGTGAAAGAGGCGCATGTGGTGGTGGCGGAGTAAGTGATGCTCCTTTCAAGTATCCGCAAAGGCCGCCAGTAATGAAGCGGTCAGTATTGGCGATGGATTAGCTCCGGTCAGAATCGTGGCGATATGAGCCCCCTGAGGCCACTGGTCACGCATGGCATAGGCGGCTGCCAAGCCGAGTGCCCCTGCGGGTTCCAACAGCAGCCCCAGATGTTCCAGGCCAAGGCGCATGCCCTCTTCGATACGGGCTTCGTCCACGAGCCAAATGTCATCGACTACATCACGCATATCCTCCAGTGCCTCGGTAATAGGAGCGCGAACCGCCACGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-2765 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGS01000008.1 Halomonas sp. BC1 scaffold00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38 28 100.0 32 ............................ GCGAAAACATGCCACGCAACCGCGTTATTGCT 98 28 100.0 32 ............................ TTCTGGCGTTTGCAGATGGCGACATTGACCGC 158 28 100.0 32 ............................ CAGCACGTTGGAGGCAATATCGGCGGCGCTGG 218 28 100.0 32 ............................ ATGTAGCCCATGTACCCCAGCGCTTCGGAGCT 278 28 100.0 32 ............................ TGATTGACGTCAAAGCCAGCCTGGGCTAGGAA 338 28 100.0 32 ............................ AATGATTCCATCCAGGTAGGCAGCGCCGCCGT 398 28 100.0 32 ............................ GCCTCAAAAGCTGCTTGCTGATATGGCCTAAG 458 28 100.0 32 ............................ TCAAGGCGCTGTTGGAATCGGTGCGTTTCAAG 518 28 100.0 32 ............................ GAGTGGCGCATCCGGCTGTGGCGCGACACTGC 578 28 100.0 32 ............................ TATCCCTCATTGGCTTCACCACGCCTGTGACG 638 28 100.0 32 ............................ CTACGGATATACCGCTGGTTCAGCACTTAGAC 698 28 100.0 32 ............................ ATACACAGTGCCCGACCACATGCTAACCGACA 758 28 100.0 32 ............................ AACCGATCAATCCCGCGCTTTGCGGCTAATCC 818 28 100.0 32 ............................ CTCGGCATAGCGCAGCACCGCTTCCCTGCCAT 878 28 100.0 32 ............................ TGATTAACAATGTCAGCCACGATGGCGCTCGT 938 28 100.0 32 ............................ AGAAGAAGATGAGGGGTTTGATAAAATCAACC 998 28 100.0 32 ............................ ACGATACGCCCTCAACAACGGCAACACATCCT 1058 28 100.0 32 ............................ TCCTAGTAGGCGCTGGCGGCCTGATGTACATG 1118 28 100.0 32 ............................ AACGCCACCGCCACCACTGCCAATAGCCTCAT 1178 28 100.0 32 ............................ TGGCTCAAACTGGCGGCGTGACCATCAACATG 1238 28 100.0 32 ............................ TCGCTTACCGGAATGATCTCTACCCACGTCCC 1298 28 100.0 32 ............................ AGGATGATGATGCAAGGTGTAAATTTCCATGA 1358 28 100.0 32 ............................ AAACACCCCATGGTGTGAATAGACCAGCTAGT 1418 28 100.0 32 ............................ GTAACCAGTGGAACCATCGCGAAACTTCACTA 1478 28 100.0 32 ............................ AGGGTATTACATGACAGCCGAAAAGGCCTTGA 1538 28 100.0 32 ............................ ACGTCGGCGCGTTCGCGGGCCTCGACGATCTC 1598 28 100.0 32 ............................ GTCGGGCTGAACGGCTGGTGGCCTATGTTCTG 1658 28 100.0 32 ............................ AGCAACGACCGGAAACCGCAACCCACGGAGAT 1718 28 100.0 32 ............................ TGCGCCGCCTGCTGCAGGCCATTCCAGACAGC 1778 28 100.0 32 ............................ AGGGTGACGACCTGAGAATACTTGCCGCTTTC 1838 28 100.0 32 ............................ AGCGCGCCCAGCTCCACCTGGTTGCAGTCCAT 1898 28 100.0 32 ............................ TTCACCGAAACATTCAGCGTAGAAGCGTTCGA 1958 28 100.0 32 ............................ CGCGCCCTGGAGGCGCTGGAAGAACTGCTGAA 2018 28 100.0 32 ............................ TGCAGCGCTTCTACTGCGAGACGCAAGAGCAA 2078 28 100.0 32 ............................ TAGAAATAATAGTGCACCAAACACGCCACTCA 2138 28 100.0 32 ............................ GAGACCCCAACAACTGGCAGGCGCTGCTGAAC 2198 28 100.0 32 ............................ TATGCCAGAGCTTCAGCATGAAGGTATTAATG 2258 28 100.0 32 ............................ AACGCGCCATTGGCGGCGTATGGCTTGATAGT 2318 28 100.0 32 ............................ AAGATGTTTTGGCAGTGATTCGGTCGATGGTG 2378 28 100.0 32 ............................ AACCACTATAGCGCGCTGCCAATCGTCATCGT 2438 28 100.0 32 ............................ TGCCCCCACCAGGGGAGCGACTCAGGGCCGTA 2498 28 100.0 32 ............................ TGATCGATGCCCGCTTTTTCGGCAGCCTGTAC 2558 28 100.0 32 ............................ ATTCCACCCCTTCGGCTCCCCACTGGCTGGCT 2618 28 100.0 32 ............................ TTCCCGGCACGTTCGTGACCAGCGATGGCACT 2678 28 100.0 32 ............................ CGGGGCGTAGCCCGGGACCGAGGGCGTGGCGA 2738 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 46 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AGAAATAGTGCCACCAGAGTGCCAACGGCAGCAAGCCG # Right flank : ATTGCCAACCGACGCTCATACTCATCGGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3468-5416 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGS01000008.1 Halomonas sp. BC1 scaffold00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3468 28 100.0 32 ............................ TCGGCTTGGGCGACGCCCAGGGCGTTGATCGA 3528 28 100.0 32 ............................ ATGAGCCTTGCTGCAATGGGTGGTTTTACTGG 3588 28 100.0 32 ............................ GTGAATACCTTGAACGTCTCGGCTTTGCGCTT 3648 28 100.0 32 ............................ TACTGCACCGAGGCCGCCATCTGGGCCGCCGA 3708 28 100.0 32 ............................ TTAAAGACACGCTGGACGCTGCGCTGGATGCG 3768 28 100.0 32 ............................ TACCGGGCAACACCGCACCATGGCAGCGCGAT 3828 28 100.0 32 ............................ AGGACGCCGCGCAAATGGTCGCTGAGGCGGAA 3888 28 100.0 32 ............................ ACCACGTAGGCATCGTTGGAGCTTTCGTAGTT 3948 28 100.0 32 ............................ AGCTTTATCAGGCGCTGCCATGCCGTATCTAG 4008 28 100.0 32 ............................ AAATACCTCCGCATCAAAACCAGCGCAAACGA 4068 28 96.4 32 .....T...................... ACTAAAAGAAACTTGGAACGTGCTGTTCTTGC 4128 28 100.0 32 ............................ ATGGTGCCCGCGGCGCTCTGGCGGCTACGATT 4188 28 100.0 32 ............................ ACCCACGGCCCCCATGACTGAGCGATGGCGGA 4248 28 100.0 32 ............................ GTGATGATCAAGCCAGCTTTATAATTCTGGGC 4308 28 100.0 33 ............................ CTCAAATTGCGGGCATAAAAAAACCCGCACTTG 4369 28 100.0 32 ............................ TCATTAACCTGCACTGGCACTGCGAGAGCCGC 4429 28 100.0 32 ............................ CTGAATCAGTCCCACAACACTGGCGGCATCGG 4489 28 100.0 32 ............................ TGGCCTAACCCCGACTCAGATGCGCGCGGCTG 4549 28 100.0 32 ............................ TGCTTGACATCGTGCAGCTCCTCGCGCAGCTC 4609 28 100.0 32 ............................ ACTACCGGTAGCACGCAATGCAACGCCAATCA 4669 28 100.0 32 ............................ TATGCGCTGAGCAATAACAACGCCAACATAAA 4729 28 100.0 32 ............................ TGCTCCACCACAAGGAAAAAATGGCCTAATGG 4789 28 100.0 32 ............................ TGGATGCCGACAGCGAGGGCAGGGCGCTGCCA 4849 28 100.0 32 ............................ ACTGAGGAGGGGCGGTCTCGCCCAAGGGCTCA 4909 28 100.0 31 ............................ AAGAGCCAAATTTCAGGCAAAAAAAGGGGCC 4968 28 100.0 32 ............................ ACGCTGCCGTTTCAGATTGCCATCCTCAATGC 5028 28 100.0 32 ............................ TAAGCGCCAAGCCGCCGCGATGCTGCTTCAGG 5088 28 100.0 32 ............................ TATCAGCAGCCCAAGTGCCCTGTGTGCCAGTA 5148 28 100.0 32 ............................ TATCAGCAGCCCAAGTGCCCTGTGTGCCAGTA 5208 28 100.0 32 ............................ ACACAGGCGCGTCAACGCCTCAAGTCGCTTAT 5268 28 100.0 32 ............................ ATAACCAGCGTGCAGGTGGTGCACGTTCATCA 5328 28 100.0 33 ............................ CCGTCGCGCCGTGGGATATACTCGTTTGCCACA 5389 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCAGTGCCACAAACAGAGGGAGCCCCTC # Right flank : AAACACCGGTAGCGAGCATGAGCAAAGGGAGCAGTTCGCTGCCGCCCAGTACTTGCCCCCTTAAAATACATAGTAGCAACGATTAAATCGTAATTATTTGTTTTGAAAGATTTTTTTCTATGCATGGAACTATGTATTTATGCGCATGGGTACATAGTTTTAGGATTGAAAAGAGCTATTCGCCAATTCAGGCCTTGGGTAGGCCCCTGCAGGGTGGCCTCAATACCGCATGAGTGCTTACAAGAATAGTGAGAATTTGATCGAGTCATTCTTTATTTCTTATAACCCAGGCGACGTGAAAATGGAGTGAACTATCTAAATGATTGATTCGATGTCTACCATCCCGTGCTGTCGTAAGTGTTGGTAAAAGGGGGATTAGAGATCCGATAATTCATGCGATAGGATAAAATTGCAAAGGATTAACGAGAAAATCCGTTTGGTATTTTATTCTCAGGATTGGCCAAAGGTATTTAGTCTGTCTTCTAAGATAGAAGGCTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //