Array 1 732915-730728 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFF01000001.1 Ignatzschineria sp. F8392 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 732914 28 100.0 32 ............................ AAACTAACGCTAGATTAAATGCTATTGAAAAG 732854 28 100.0 32 ............................ TTGATTTTCATATCAGTAGAGAGAGAAGAGAT 732794 28 100.0 32 ............................ GATATTATTTATTGACAAGTGTGTAAATGCCC 732734 28 100.0 32 ............................ AGATTCTAACGCCGTTATCGTTCAAATATTTA 732674 28 100.0 32 ............................ TGGTGATAAAATAGGCGCTTATGCATTAGCTC 732614 28 100.0 32 ............................ ATAAAAATAAACTGTTGATATTTATAGGAGGA 732554 28 100.0 32 ............................ TCTTTAAAAATCTCAGTAATCTGCCCCTTTGC 732494 28 100.0 32 ............................ CGTTTGAATCAATAGAAGATGATGAAATCTTT 732434 28 100.0 32 ............................ GTTTTGGGCAAGGCGGTAGAATGGCTGAGATG 732374 28 100.0 32 ............................ CTAGATAAAAACTTAATTCGAGCATCTTTAAG 732314 28 100.0 32 ............................ GTAACTATAGTTATGTAATGAAAACATACAAC 732254 28 100.0 32 ............................ CTTTGTTCTCATTAAGAGCGAGAGATACTCAT 732194 28 100.0 32 ............................ AGCAAGTCTTGGGACTGAGGCTCTATGCTTTT 732134 28 100.0 32 ............................ TACGAACAAAACACCGTCCACTCAAAGCCATT 732074 28 100.0 32 ............................ TATTAGAATACGGGGGCGCACAGCGCAGGAAA 732014 28 100.0 32 ............................ TCTTCAAATAAGATCTTACTTTCTTTTGAATT 731954 28 100.0 32 ............................ CTTACTGAAAAATCAACGCTGGAACTCAGCAA 731894 28 100.0 32 ............................ TCTGATTCGCCGTTTGCCCATCTTTTTACGAT 731834 28 100.0 32 ............................ TCTGCTTCGCTTCTGTTCGCTTTGGGTAATCA 731774 28 100.0 32 ............................ AAGAGGTGCGCATAATTACAGATACAGAAGAG 731714 28 100.0 32 ............................ TTTAGATTCGGCAATCGCTTCAACTCTCATTC 731654 28 100.0 32 ............................ TGCTTCACAGGCTCTTTTACTGCCTTAAAGCT 731594 28 100.0 32 ............................ TTCTATTTCTTCAAAGCGCTGTATTGTGATGC 731534 28 100.0 32 ............................ TTTTAAACAAATTAATCGAAATTCAATTATTA 731474 28 100.0 32 ............................ TGTGTTTCTGCTAATCATATTGACCTCTACTC 731414 28 100.0 32 ............................ TGCCTCTTTTTGAGTGCGCATCATCTGCTCGA 731354 28 100.0 32 ............................ TCTAATTTCTCGACCTGTTCTGTCTTGATGAA 731294 28 100.0 32 ............................ TGTATCTAGCCTGCCTGTCTTGTTTTGCTGAT 731234 28 100.0 32 ............................ TCTGATCTATCTACACCTAAGCGTTGCATTGA 731174 28 100.0 32 ............................ GACTTCATCGACAATCAAAAGGTCGATATTTT 731114 28 100.0 32 ............................ TGTTTATCACGATCCTGAGATTATTCGTGGTT 731054 28 100.0 32 ............................ TTGTCTCTATCTTCAACAACAGCTTCTATTGA 730994 28 100.0 32 ............................ AATGGGATCGCTCGTTAATACATCCCCCCAGC 730934 28 100.0 32 ............................ GCTAGATTGCTTCGTTACTAATGCATTATTCC 730874 28 100.0 32 ............................ GATAATGAGAGAATGGCGTAATGAGCGTAAAG 730814 27 92.9 32 ...C..............-......... AATTGCTGGTGCCGGCACATCTTTCAATTGTG 730755 28 71.4 0 ...C......AC...A.TG.....A.G. | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CAACCTATCATTACCCATATCGCCTTAAAACCCACCTCAAGCCTTCGTTTAGAAGGAAGAACTGTAGATATTAATGGCAATGAGACATCAGTCATTACCAAAGGGCGACACGATCCATGCGTCGGTATTCGCGCAACCCCTATTGCAGAAGCGATGTTAGCGATTACCCTACTCGATCATGCCCTACGTCATCGCGGACAGACCGGCCAATAAATATCATCAATCGATGAGTCGCCTAACCCACGACTCATTGTGAATTGAGCCCCAATAAAGGGTGAGGTTCTTATCACCACTGCTCTTCACAAAAGTAGTAAGAACCTCTTTACAGAGAGGGATTAATATGATTTTAACGCGTTAATTCTTTTTTGACCTTTATTTTATGCTCTTTAAAAACTTAGCAATAAATCAATAAGTTCTGAAATATGAGGAGATAATAGGTTTTTAAAGGCAAAACCACCTTAAACTTAGACTACTCAGCCCTTTTAAGACTTAAATCTATT # Right flank : TATTAGGTAATCATGTAGGATTAATTAATTTCAAACATATAAAATTTTCTATAAAAATAAAAAAGATCCTAAAATCAATCTCTAATAGATCTCTAATATAGTATTAATGCTCTCATAATCATAAGACTGATAGTATCGGGATATTGACCTCATGAGTTCATTACTCTAAGGTGAAAGAGATAATATTATAGGGATAGAGAGAAATGACCAGAAACTTCAAGATTCGCAGCCTCTTTTTAATGCTTCTTCTACTCTTTTCGATGGGACTTTCCCCTTTAATGGCGGAAGATATACCGATCGAAGAGCGTACCGAAAAACTCAATGATATTGAATTAAAGCTTGAGGATATTCTTGCAAGAAAGAAATCCCTTCAAAGTCAGCTCAAAGATAAAGCGCTCTCGGAAGAGGAGGTCGCAGATCTTAACCAACGACTACAGACTCTTTTACATCAACAGAAAGAATTTAATGCTCTCTTTGAACAGACAGCTCTTGGAGGAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 235302-225131 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFF01000004.1 Ignatzschineria sp. F8392 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 235301 28 100.0 32 ............................ AAAGCTCACTCTTCTTACGCGCGGTTTTCGCT 235241 28 100.0 32 ............................ ACTCGAACTCGTTGCAGAGCTGAATGATTGTG 235181 28 100.0 32 ............................ GGAGGATATCGAGGTTTTTAGCAAGCTCTTGC 235121 28 100.0 32 ............................ AATCGATAGCCCTCGCACTGCTTTTGCTTTAA 235061 28 100.0 32 ............................ AAGCATTTAACATTGTTTATATAAGATGTGAT 235001 28 100.0 32 ............................ TTTAGGAGAGTTTTTAACTAGTGAAGTTGAAA 234941 28 100.0 32 ............................ GTCCTCACCAATAAAGCAAGTTGGGTTACTTT 234881 28 100.0 32 ............................ AAAATTAACTGTAGTTACTGCATTAGTAGCAT 234821 28 100.0 32 ............................ GAAATAGGGAAGTTATCTCAAAGAGAGTGAAA 234761 28 100.0 32 ............................ TTCATTATTGATTCATAATTAATACCTTTGAC 234701 28 100.0 32 ............................ CGGAAGATCTGCTTTTTACACCGCAGGTGTGA 234641 28 100.0 32 ............................ AGTTTTATACGTTATCTTTGTATTATTTTTTA 234581 28 100.0 32 ............................ TTTTTCTGTAAATAAAGGAATTAAAGAGCTAG 234521 28 100.0 32 ............................ TGTATACTCTCCCTCTTTAAGCTCAAAATATT 234461 28 100.0 32 ............................ TCTTTAAGCTCAAAATATTGACCACCAAACGC 234401 28 100.0 32 ............................ ATCAACATGAAATACCCCGTCTAATATTCCTT 234341 28 100.0 32 ............................ AATATAAAATTGGAGTCCCTTTCTCCCCTTTT 234281 28 100.0 32 ............................ AAAAGAGGCAAAAGAAAATGGCATTAAAGTTT 234221 28 100.0 32 ............................ ACCCTTTTGGATACCTCTCTTAATTCCCCCTC 234161 28 100.0 32 ............................ TCATCTAAAATAACTTTATTTCTTTCAGGAAT 234101 28 100.0 32 ............................ TGCAAACATAATGAAAATACCTCCTAATGATA 234041 28 100.0 32 ............................ ATATGCCCTATATGCCAAGGATATGCTTTAAA 233981 28 100.0 32 ............................ TTATCCCCACTTTTTAAAATAGTTAAACCATT 233921 28 100.0 32 ............................ TGAGGGGGTTCATGCTACCGGTCATGAATCTA 233861 28 100.0 32 ............................ TTCATTAACAGTTACACGATCTCCAAGATTTT 233801 28 100.0 32 ............................ AATTATCTAAGGATATTTACTCTGATAATGGT 233741 28 100.0 32 ............................ AGTGGTTAGATTCTAAGGAAAGCCAATTGATA 233681 28 100.0 32 ............................ ATCTCCTTTCATAATAACGGAAGATAACGATT 233621 28 100.0 32 ............................ TGAATATATTAAGTTTGAAGTTTAAATTTAAT 233561 28 100.0 32 ............................ TAAACTATATTATCGCTTAAATATGCGCGTAT 233501 28 100.0 32 ............................ CGTCTAGCCACCTTTAGTGTATCAATAGTCAA 233441 28 100.0 32 ............................ TTAATATCTCATTAGCAGATAATAAAGACGAT 233381 28 100.0 32 ............................ AATATGATATCCATGAAAGTGGAAAAATTGAG 233321 28 100.0 32 ............................ AAACTCAAAAAGCATAATATCGAAGATTTTTT 233261 28 100.0 32 ............................ ATCATATGAAGATGATACATATTTATACCAAG 233201 28 100.0 32 ............................ GATATCTCGAATGATGTCTTTTGCAAGCGCTC 233141 28 100.0 32 ............................ TAAAATCTTAGCGACTTTCTCGCGCTTCTCTT 233081 28 100.0 32 ............................ GTCAATATTAATGCGATGTACCGTCATTATTT 233021 28 100.0 32 ............................ TTAGATTAAACTCATTATCTCACTTAGTTTTT 232961 28 100.0 32 ............................ ATGTTAGCTTCTACAGTGTACTGAATACCGCC 232901 28 100.0 32 ............................ ATGCCTTAACTCCTGATTTTTAAGTAAATAGA 232841 28 100.0 32 ............................ AGTTAAAGAAGCAGAAGAGCGACTAAAGGGTT 232781 28 100.0 32 ............................ TAATTTACTCATAGCGTAAAGAGAAGGGCGCA 232721 28 100.0 32 ............................ AAGCTTGAGATTAGAATTTTTAGAAGGTGTAG 232661 28 100.0 32 ............................ ATTAATAGTATGTGTGATCGTTATTGCAATCC 232601 28 100.0 32 ............................ TTTAAGTGCGGATATTTACGCACATCGACATA 232541 28 100.0 32 ............................ TGTTTGTAACATGTTGATTTTCCTTTTTTGGG 232481 28 100.0 32 ............................ AATCTATTTGATCATCGCAAAATGAATAAGAT 232421 28 100.0 32 ............................ TTAAAGAAGCCATCATTTCTCCAAATGTGATA 232361 28 100.0 32 ............................ TTTTCAATTACCAAGCATAACCAACACTCATA 232301 28 100.0 32 ............................ ATTTTTATTTCTGAAGAATGTAATTTAACTTG 232241 28 100.0 32 ............................ ATAAAAGGTTTAATAAAAGAAAAAAATGAAGC 232181 28 100.0 32 ............................ TGAGAGCTTCTCTTTTACTTGACCCCTCAACT 232121 28 100.0 32 ............................ ACTTACGGTCTTGATATACCCGTCTTATCTTG 232061 28 100.0 32 ............................ TAAATATATAACTGATCTTCTTGCGATAAAAG 232001 28 100.0 32 ............................ AATTAGCTAGCTTTGACACTTTTGAGTCTTGG 231941 28 100.0 32 ............................ ATTATCGAACGACCTAAATCACCAAACTCACC 231881 28 100.0 32 ............................ CATAAGCCCCTTCTCTCAAAATTTTACCACTT 231821 28 100.0 32 ............................ TAAGGTTTGCACTCGTTGCGATAAATAGCTCT 231761 28 100.0 32 ............................ TTTTCAATTACCAAGCATAACCAACACTCATA 231701 28 100.0 32 ............................ GATATCGATAAGTTTATAGATGAGATCGAGTA 231641 28 100.0 32 ............................ GAGCTTAAAGATACAGGCGCAGAGTGGACTAA 231581 28 100.0 32 ............................ TTGCCCCTTATCTTTTTTTGCACGTTTCCTCA 231521 28 100.0 32 ............................ TAGAAAAGAAAAAAGACAGAACATAACTAGTT 231461 28 100.0 33 ............................ CAATAAAAAACTGTTTAAAAAATAATAGGTTAT 231400 28 100.0 32 ............................ AAATGGCTTCGACATTAGCTTCTTATGGTTTG 231340 28 100.0 32 ............................ AGTCCATAACAAGAATGATCGACTCTAATGCC 231280 28 100.0 32 ............................ AACATAATGAATAGTCTTGTAGATAACATCTC 231220 28 100.0 32 ............................ CTTTCTGTTTAAGTGATCTTGTTTCTTAAGTG 231160 28 100.0 32 ............................ ATAGCCGTTATAAGATAGCAATCATTGGAAAC 231100 28 100.0 32 ............................ GTGAATAAATCATCGTATTTTTAACGGGCATT 231040 28 100.0 32 ............................ TGTTACTGGACTCAAGTCGGGGTTAGAGCTTG 230980 28 100.0 33 ............................ ATATTGGATGGTTGTTGCTAAGGCTACTTATTA 230919 28 100.0 32 ............................ ATATTAACCTCTCGCTACTTCTTTATAGATTG 230859 28 100.0 32 ............................ TTACGAGTTACTTGTTAAGCATTTTACTGCAT 230799 28 100.0 32 ............................ TAAATCTCTTATGTAGCCACCTTTCGCTCATT 230739 28 100.0 32 ............................ TGCTCCCGTAATACCTGCCATTCGGAGATGAG 230679 28 100.0 32 ............................ TTTCTAATCCAACCGTTGCGCTCGTACATGCA 230619 28 100.0 32 ............................ TGATTTATTAACACTCTCAAGTTTACCCTTCC 230559 28 100.0 32 ............................ AGTGACCGTTATTATAAGCATATCGTAATGTT 230499 28 100.0 32 ............................ TGATGTGAGAGTTATAAAGAAAGGCACGACAA 230439 28 100.0 32 ............................ TTTCTCATTATCCTCCTAAATCTCTTATGTAG 230379 28 100.0 32 ............................ TTTTACGGCGTGAAGCAGTTTTCAAAAGATGA 230319 28 100.0 32 ............................ GTATATTATAAAGACAGACTTCATGACGTGTT 230259 28 100.0 32 ............................ TTGATAACAAGCTTCGCGTACGGTTCATTATT 230199 28 100.0 32 ............................ TGATGTAGTGGGTGATTTAAAAGAAGGGGAAA 230139 28 100.0 32 ............................ ATATCGTCATTCAAAATGAATTAAGAACCGTC 230079 28 100.0 32 ............................ AGAAGTGGTGTATATCATAGTGCTGTAGACGA 230019 28 100.0 32 ............................ AGTAAGCTCATTACGTACATTGCTGAATTTAT 229959 28 100.0 32 ............................ GATCAGCGCATTCCCGTCAACCTGTGTGATAA 229899 28 100.0 32 ............................ CGCTGACAAGTTTGTTTTAGATATGATTAGCT 229839 28 100.0 32 ............................ TTACTCATTGATAATACTCCTGCTACTTTTAC 229779 28 100.0 32 ............................ AAAGAAACCTGTGGGTTCGCTCGTCGGTACTT 229719 28 100.0 32 ............................ CTCTGCCTAATTTTGGAAGTTGTGTCGCAATG 229659 28 100.0 32 ............................ GTTCAGATACCAGACAATCGCCGCCAATCCCA 229599 28 100.0 32 ............................ TTATATCTTCCCGAAAGCTTCTCTTTGACCTG 229539 28 100.0 32 ............................ ATCTTTAAACCGCCTGTGCGGCGAATCAACAA 229479 28 100.0 32 ............................ AAATAACTCACGATCTCGATCGTTAGTTAAAA 229419 28 100.0 32 ............................ AATTGGGTAAAAAACCAAAAAAAAAAATAATC 229359 28 100.0 32 ............................ TTTCAATTTCTCTTAATTAGGGAGTGCTTATA 229299 28 100.0 32 ............................ TTATTGATTTTGATTTATCTAGCGAGCGAGGA 229239 28 100.0 32 ............................ GCTGTTAATATTGTTACTACTTGGAACCCTTA 229179 28 100.0 32 ............................ AAAGGCGCAGAGCACGCCGGCTATGGTGCCTA 229119 28 100.0 32 ............................ TAAATAATTTTTAAGATCTGAAATTGTGAATT 229059 28 100.0 32 ............................ AACAAAATTTAAAAAACGCAAGGTCGCTACTT 228999 28 100.0 32 ............................ TTGCAACTCAATTTCATTATCGAGTATTATTT 228939 28 100.0 32 ............................ TAACGTCAGAGTACTTCAAACACCTCAGTTTG 228879 28 100.0 32 ............................ ATCTTTACATGCGAACTCTTTCTTCTTAAAGT 228819 28 100.0 32 ............................ TCTTAAAAAATCTTCAATCTCTTTTTCTGTGA 228759 28 100.0 32 ............................ TTTTCAACAATTCTCTTCATGATCTTCTTTTG 228699 28 100.0 32 ............................ TTCTTTCATAGGAATTGATAATGGCATTACAC 228639 28 100.0 32 ............................ TTGATGATTTCTTAAGCGATTATATGGAGCAT 228579 28 100.0 32 ............................ TCGAGATTGTCAAGAATAAATGAGAGGGATTC 228519 28 100.0 32 ............................ TTTGGAGAATCTCATATAATCACCCCAAATCA 228459 28 100.0 32 ............................ ATTTGTATATTACTTAAACTCATTTATTATAA 228399 28 100.0 32 ............................ ATAATGCAAGAATTCAAAGAGATAACTAAAGA 228339 28 100.0 32 ............................ TAAAAAATTATTTTCTTTAAATCTTAAAACCA 228279 28 100.0 32 ............................ TTTCTATCTTTATAAAGTTTAAAAGCAGTGTA 228219 28 100.0 32 ............................ TTGATATACTGATTAGAGACAAACACCAGAAG 228159 28 100.0 32 ............................ ATAGAAGCAATCTTCACTGGCGTTTATAGCTT 228099 28 100.0 32 ............................ TTCTTGATCTGCTACGCTATAGCAAGCGATAC 228039 28 100.0 32 ............................ GTTTTCGTCTTTCTTCCACATATAAATAGCCT 227979 28 100.0 32 ............................ TTTTTTAGATGTTCGCTTACTTTCTGTATTGT 227919 28 100.0 32 ............................ AAAAGCACGGGGCACGGAATAGTGTATGAGGC 227859 28 100.0 32 ............................ ATCACTAAAAAAGAGTTGTTGAGGGTATAAAC 227799 28 100.0 32 ............................ TGATCAGGTTGGTGCGGTTGGTAAAATTGGTC 227739 28 100.0 32 ............................ AAAGATTGTGGATGGTTAGATAAAAAAGCAAT 227679 28 100.0 32 ............................ TGCCACACCTTTGGTTTCTTTAATATTAATGA 227619 28 100.0 32 ............................ AAAATTGGCAGGTTAGTATTTCTCTTATGATC 227559 28 100.0 32 ............................ AAAGCGAAATAAAAGAAATTAGAGAAAAGTGG 227499 28 100.0 32 ............................ TGTTTGTAACTGTGTGATAGATAAGCCTCGCA 227439 28 100.0 32 ............................ TTATGGGAAAAGATCGACAGCGAGAGGGCGCT 227379 28 100.0 32 ............................ ATTGATCCTGCTCGACCACTTCAAACTCTGGT 227319 28 100.0 33 ............................ TCGTTCTCCTGCTGTGTCTCCGTCTAGCCATAT 227258 28 100.0 32 ............................ ATAGTTTGTTCGACTAGCTCATAGATAAAGTC 227198 28 100.0 32 ............................ AATGTGTCGATAATCTCATCATCATCATTAAA 227138 28 100.0 32 ............................ TAAACCATCAGGCGATAATCCAAGATATATCG 227078 28 100.0 32 ............................ TGTAGTAAGACCTAGACCAGAGATATTAGGGG 227018 28 100.0 32 ............................ AGTTCATGCGGTAAAGCAATTACAAATTCTCT 226958 28 100.0 32 ............................ TTTTTGATAACGCCGATAATTTGCTTTATCCC 226898 28 100.0 32 ............................ ACAAAACATGAAGGACCGATTGTTACTGAAGC 226838 28 100.0 32 ............................ AGAAAAGTATAGTAATAAAGTCGATAAGGTTA 226778 28 100.0 32 ............................ GTTCATTAATTTAATCATTTTTTCTCCTTACA 226718 28 100.0 33 ............................ CGCTCACCGGGTACGAATCAAAATAGACCACTT 226657 28 100.0 32 ............................ TTCGATATAGACTTGCGCCCCTTTTTTGAGAT 226597 28 100.0 32 ............................ AGTCTCTTACGTCAATGTGAGTGAAGTTTTTG 226537 28 100.0 32 ............................ ATGATGTCTTTAGCTTCGTTAGAGAATATTCG 226477 28 100.0 32 ............................ ATAATAACATCGCGAGGAGTAACACCAGATCT 226417 28 100.0 32 ............................ TCTGGTTTAGAATAAACCGAATAATAAGCCAT 226357 28 100.0 32 ............................ ATGATTTCAAAAACGATACTAATTCTTTGTCG 226297 28 100.0 32 ............................ ATGGTGAAGCCATCCAGCTCCCCCGTGTAATA 226237 28 100.0 32 ............................ AATATGTTGAAGCCGTTACCTCTCACAATATC 226177 28 100.0 32 ............................ AATCAAGCGGCCGGCAGTGTAGAACGACTCCA 226117 28 100.0 32 ............................ TTGCCCGGCTCCTTGCCTAAGGCCGCGCTGTA 226057 28 100.0 32 ............................ GTCGATAGTTTTAACTTACGCTTTCACAATGT 225997 28 100.0 32 ............................ TGACTATACAGTTGAATTAGATGAAAAAGAGA 225937 28 100.0 32 ............................ TACACACTTGACAATTGTTAATAAATGTGATA 225877 28 100.0 32 ............................ ACACTAAGATCGCAGGCTCTTTTTTTATATGA 225817 28 100.0 32 ............................ TTCCAGTTAATACGTCGACTTGCTAATAAGCG 225757 28 100.0 32 ............................ TATCAAATAAAGCTTGCGAATATCGAGGCGGC 225697 28 100.0 32 ............................ AAAATTGGGATGGGTGGTCTCGTAATTAGCGA 225637 28 100.0 32 ............................ AGTTGCATACTTCAAAAGTGTCTGCTTTAGGT 225577 28 100.0 32 ............................ TTTAGCCACCCCTGTAATTTTTCGATTTAACT 225517 28 100.0 32 ............................ ATTTTTGGTCCTTGTAAGATGATTCCCTCTTT 225457 28 100.0 32 ............................ CACTCTTGGAGCTTCTGGTAGATCGCTTCGTA 225397 28 100.0 32 ............................ TCAGATAAGATTCAAAACGCAACAATCTTCCC 225337 28 96.4 32 ..................G......... TGATAAGGCTACTACTTCCATCATATCTTGAG 225277 28 82.1 32 ...AA.C.T.......A........... ACTGTTAGCTTCCTGTAATGACTGTAGATATA 225217 28 82.1 32 ...AA.C......T....G......... TTCTATATTCTCTTTACGTTCCTTCTACAATT 225157 27 78.6 0 ....A......T.T......T...-..G | ========== ====== ====== ====== ============================ ================================= ================== 170 28 99.6 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTAGATCGATTATCGGATTATGTCCATATTCAATCAATTAAGGAAGTACCTAATAAAATTGAGGGTTATGTGAAATATCAACGTTATCAATCTAAAGGTGATTCTCGGTTAGAGAAGGAGAGAAGGGGATATGCCGAACATTATGCTCAACAAAACTCTGTCTCTATCGAAGAAGCGTTAAGTAGATATTCTCACTGGGAAAGAAGAGAAGTCAATTTTCCTTATATTCAAATGAAAAGTTTACACTCAAATAAAAAATTTACGCTTTTTATTAGAAAAGAAATTGTCGAAGAGAATTTAGAAAATTGTTCTAACCAGCTCTTTACAACTTATGGTTTATCTGCTGGGGGAGTTGTTCCTGAGTTTTAACCTTTATTTTTTGCTCTTTAAAAATTTACATATAATTCAATAGGTTATAAAAAAAGGAAAAATCATTGGTATTTTAAGGTAAAATAGACCTCAAATCAGATTTTTCCTTTCTTTTGGGGATTTAATCTATT # Right flank : TTTCGGCGGAAAAGGAGTCCGTAGATGCTTTGGTACAGTAGCATTTGGGGTAGCAGGTAGATAGAAAAAAGGCCGTTAATATAACGGCCTTCTTTTTAGGTTTAATCTGATATTTTTTATCAGAGATCAAGTCTTAATCAGTTATTAAATGATTAATGCTTGATTAGAATGGAGCGTCGATATCGACAACGTCAACGAGTTTGATATTAACGAACTCTTTAAGACCTAAGTCGATCAATTCACGACCATATCCTGAACGGCGGATACCACCGAATGGAAGGTCTGCTTTAACCATGGTTGGGTGGTTAACAAATACCATTCCTGTTGAGATTTGGTTTGCAACACGACGGCCACGCTCATTATCTGAAGTGAATACTGAGCCACCTAAACCAAATGGTGAGTCATTAGCAATGCGAATCGCATCAGCTTCATCTTCTGCTTTAATGATCATCGATACAGGACCGAAGAACTCTTGGTAGTATGCTGGGTTATCAGGCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //