Array 1 91200-92509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOWP010000007.1 Escherichia coli strain W52.1 accn562.56682.con.0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91200 29 100.0 32 ............................. GTGCAGCTCGTGCAAATGAAAACAAAGTGGTC 91261 29 100.0 32 ............................. CGGCTGACTGAGGCTGGCTGGGTTATGGGGGG 91322 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 91383 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 91444 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 91505 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 91566 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 91627 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 91688 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 91749 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 91810 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 91871 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 91932 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 91993 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 92054 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 92115 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 92176 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 92237 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTAGCTATGCC 92298 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 92359 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 92420 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 92481 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118208-119579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOWP010000007.1 Escherichia coli strain W52.1 accn562.56682.con.0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118208 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 118269 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 118330 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 118391 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 118452 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 118513 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 118574 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 118635 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 118696 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 118757 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 118818 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 118879 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 118940 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 119002 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 119063 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 119124 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 119185 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 119246 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 119307 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 119368 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 119429 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 119490 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 119551 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //