Array 1 88-664 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000134.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88 28 100.0 33 ............................ CGGATTGACCCCGCGGGGCACGCGGGAGACTCT 149 28 100.0 33 ............................ CGAACAGGGTAAAGTTCGCGTTCTAACTACTGG 210 28 100.0 33 ............................ CTGGGTGTACATCGAAATCCCGGTACCTCACCT 271 28 100.0 33 ............................ GTCCGGCATCGGCAGCCACTGCATCGACCCGTC 332 28 100.0 33 ............................ GCCAGTGTTTCGGCGCCCCATCAGAACGGCGGC 393 28 100.0 33 ............................ GTGATCAGGGATCGAGTCCGGCCGCGGGGGCGC 454 28 100.0 33 ............................ ATCGCCGACGGCGTCACCGTCACCAAGAAGGTC 515 28 100.0 33 ............................ GATCCAGTCGAGCGCGTACCAGCCCAGTGTCGG 576 28 100.0 33 ............................ GGGCAAGAAGGAGACCCGCTACCGGTACACGGA 637 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CCGGACACCGTGGGGAATTCGCGATCGCGGTCGGCTAAAGTGATTGAAGAATCGCTTCCCGGCGTGCGAACATGCAGGTCAGGAAGTG # Right flank : GACGGCTTCGGCTCCGGTACCTCCACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-408 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000139.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 ............................ CCGCGGTGCCTCGTGGACCTCGATGCGGCGGAA 76 28 100.0 33 ............................ GTCGAAGTGGTATGAGGCGAATCAGGATCCGAA 137 28 100.0 33 ............................ CGCATTTCTGACGCGGCCATCTCAGCAACCGAC 198 28 100.0 33 ............................ GATGATGCAGCCGATGATGTACGTCTTGCCGAC 259 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 320 28 100.0 33 ............................ CCCGGAACGCGACATCCTGTTGCCGTTCGCGGT 381 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGAGTGTTGTCACCG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 399-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000137.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 398 28 100.0 33 ............................ CGAGTGGACCTATGAAGAGTCCCCGGAGTACTC 337 28 100.0 33 ............................ TCCGGCTTGAGGTTGTTGACGATCGCCGCAAGA 276 28 100.0 33 ............................ CCGTCGTCGGTGACCGGCGCAAGCGGTTTGTTG 215 28 100.0 33 ............................ CGGCATGGTCCAGACCCCGTCGTTCGGTCGCCC 154 28 100.0 33 ............................ CGCCAAGACTGGTGGGACGCTGATCGACAAGAA 93 28 100.0 33 ............................ CACGAAGATCAGCATGTTCGGCGGTAAGACGTT 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : TCCCCGCGCGAGCGGGGATGGTCCCGACCAGGTCTCCGTCGTGGTGAGTTCGCCGC # Right flank : CCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 443-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000140.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 442 28 100.0 33 ............................ CAAGCGCGGCAGCGACGGCGACAACGGCCGCAT 381 28 100.0 33 ............................ CCCGTTGAGGACCACGAGCGCGACCTGTGTCGG 320 28 100.0 33 ............................ CACTGCTTCTGCGATGCGCGCATCTCGAGGCTC 259 28 100.0 33 ............................ CTTCGGAACCACCGTCAAGGCGGCGTATCAAGT 198 28 100.0 33 ............................ CGGAATCATGATGCTTAACCATGATCAAGCCAT 137 28 100.0 33 ............................ CTTCGCGTTGCCGATCCAGGTCGGTCCTCGCGG 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : AGACATCCGACGCACACGGCCCGA # Right flank : CCGAGACAACGTTCTCGTCTGCAACAACCTGGTCGTGCTCCCGCGCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-215 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000142.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ............................ GACGGCTTCGGCTCCGGTACCTCCACACCCGGC 66 28 100.0 33 ............................ GTACCGGATCATCTTGGGGAGCTGGCGCATGTT 127 28 100.0 33 ............................ GAACAAGATCCGCGCCGCGGCCGAGAGGTTCAA 188 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGGAG # Right flank : CACGGACGACTGGCAGACATGGTCGACGGGCAAGTGCTCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 530-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000170.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 529 28 100.0 33 ............................ CTAGCTGCGGCGTTGATCCCGTACGACTCATTG 468 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 407 28 100.0 41 ............................ GTCGTCCAACTTCTCCATGCGGGTGCTCACGATCTCACTCT 338 28 100.0 33 ............................ CACGGTGCCCTCGAAAAGCCGTAGGCCCTCGCG 277 28 96.4 33 ...............T............ GGCCGAGGACCAGGCACTAGCCGAGCATCGTAA 216 28 100.0 33 ............................ CAACCTCAAGCCGGATTCGGCACTCTATCGGCG 155 28 100.0 33 ............................ TGCGGCTGCAGGCTCTTCGACGATGGGGTCCGC 94 28 100.0 33 ............................ CGCGCCCTGCTCCTTCTTGGTCAGCACGGAGTC 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 9 28 99.6 34 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ATGGGATGCGCTTCAAGG # Right flank : CCGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 394-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000175.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393 28 100.0 33 ............................ CCCGGAACGCGACATCCTGTTGCCGTTCGCGGT 332 28 100.0 33 ............................ CGTCAACCTCCTTAACCTCTTGAAGGCGAATCC 271 28 100.0 33 ............................ CATGAACGCTGCTCTCGGCCGCATCGGCGCGAG 210 28 100.0 33 ............................ CCCTGTCCGCCAAGGACTACGAGTGCCCAACCT 149 28 100.0 33 ............................ TAGCTTGCTCGACGGTCGGCATGTCGTAAGACG 88 28 100.0 33 ............................ CTGTCCAGCGCGTTGAAAGCTGACTCCGACGCT 27 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : TCGCGTCAGCAGCGACCG # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 240-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000056.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239 28 100.0 33 ............................ GTCGGGATGCACGATCATCTCAACCTCAACCAC 178 28 100.0 33 ............................ CGCGCTGTGTGATGGTCTTGATAACGTTGCTGC 117 28 100.0 33 ............................ CTTCGCACCGCGGGTGATTCTCGGATCGAACGG 56 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GATGGTCCCGTCGCGCCGAGGATGTTCGAGCCCGAGTTGG # Right flank : CCGTGTACCCGGGCGATGGGATGCGCTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 854-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000062.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 853 28 100.0 33 ............................ CGGCATCTCGCCGATCTCATCGACCTTCGCGTA 792 28 100.0 33 ............................ GACGTGGGCGGACGGTAGTGCTGGCGGCACTCC 731 28 100.0 33 ............................ TCCATCGATTCCATCGTCGGACCGTAGAACGTC 670 28 100.0 33 ............................ CAGTTCTTCACCGATCCGTTTGTGGCCGCTGAT 609 28 100.0 33 ............................ CTCGGGAGGCTCGAATGTTGGCTCCTCGAAAAC 548 28 100.0 33 ............................ CAAGGGCAAGATCCCTTTCGATAAGCAGATCGG 487 28 100.0 33 ............................ CCTTTTGCCCGGACCAATCGCCGGAATTCCTCT 426 28 100.0 33 ............................ CGCCAGGTACAGGCGTTTGCGGATAGCGGGAGT 365 28 100.0 33 ............................ TCCGTCAGCCATTGCCGCCTCCACAGAGGATGA 304 28 100.0 33 ............................ ACTCCGGAGCATACGGTGGTCCAGCACCATCGA 243 28 100.0 25 ............................ GAATGCTTGGGCGGTGGTGCGTATC Deletion [191] 190 28 100.0 33 ............................ GCAAGTGATCGATCGCGCCAAGTCCATGATCGG 129 28 100.0 33 ............................ CTCGTCCCCGCGCCAGGCCACGGCTCCGGATCG 68 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CTTCTTGGTCAGCACGGAGT # Right flank : CCAGCGCGAAATTCAGGCTGTCGCCGCTCTTGCGGTGCTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000063.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36 28 100.0 33 ............................ GTGTCCGCGGCGGTCGACGCGGCTGTCCCGCAG 97 28 96.4 33 .C.......................... CTCGGCGCGACGCTCGGGTGTCGACGGCTTCTT 158 28 100.0 33 ............................ CGGCATCGGCGTGATCGACGCCGGATACCGCGG 219 28 100.0 33 ............................ GCAGCACCAGTGAAGCTGTCGCCATCGGGCCCG 280 28 100.0 33 ............................ CCCGCATCCACGCCCCGCACCAGGTGATCCCAC 341 28 100.0 33 ............................ GAACTCGACGTTCGCTGCTCCGTAGAGGAGTTC 402 28 100.0 34 ............................ CCCCGGCGCTAACCCTGGGTCTAACCCTTGGCCG 464 28 100.0 33 ............................ CACCGGCACCATCGAAGGCCGCCTCGACAGCAT 525 28 100.0 33 ............................ GATCATCGACGGTGCCCCGTGGTGGGTGGGCGC 586 28 100.0 33 ............................ CAGGGCACCGACACCGATGATCGCGTTGCGCTT 647 28 100.0 33 ............................ CCGGATCGTCTCATTCGGCAGGTACAGCGTCTC 708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.7 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CCGATGGACCCGTCGTCCATGCCGAGCGCCCTTTCG # Right flank : CGGCTTCTCGGTCGCACCGACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 659-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000067.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 658 28 100.0 33 ............................ CAAGGGACAGATGACACCGCTGGTGATGGGGAC 597 28 100.0 33 ............................ CTCCCGTAGTGCTGCACGTGGATACGGTCCCCG 536 28 100.0 34 ............................ ATCCGGAAGACCGGAGGCGCGAGCAAACAGCTTC 474 28 100.0 33 ............................ GGGCCAGGCCCCGGAATGCCCGGGGGCCTGGCC 413 28 100.0 33 ............................ CGTTGCCCGCGCATCAGTCTGGTGATCTCATCC 352 28 100.0 33 ............................ TGGGATGCGGACCATGCCAAGTGGGAGAAGTCG 291 28 100.0 33 ............................ GGCGTACGACGCCAAGATCGCCGCTCTGTCCGC 230 28 100.0 33 ............................ CTGAAAGCAGTGCCCGCATCCATCGGCTTCGCG 169 28 100.0 33 ............................ CGGCAGCGTCATAGATATGCAGCCAAAGCGTCT 108 28 96.4 33 ......................G..... CGGCATGGAGCGGCCCGCCGGGGCATACGGGCT 47 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 99.3 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ATCGAGTTTCTTCA # Right flank : CGTGTGGACCGTGCTGGTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1237-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000070.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1236 28 100.0 33 ............................ CGGCTACGACCACCGCAAGCCGACCGCCAAGGG 1175 28 100.0 33 ............................ CCGTGACAGAACAAGACCAGTAACGACTTTGTC 1114 28 100.0 33 ............................ CCCCGGGAGGCGATGCCTACCGGGGTTCCTTCG 1053 28 100.0 33 ............................ TGTCGCGCGACTCCTTCGGGATGCCCTGCATCT 992 28 100.0 33 ............................ CTGTACACCGAAGCCGGGTTCGGTCCGCACGGG 931 28 96.4 33 ..................C......... CTCGGGTCTGGTGTGGACGCGCCCGGCGACCGA 870 28 100.0 33 ............................ CGGCTACGGCACTCACGGTGCGGGCGGTATCGG 809 28 100.0 33 ............................ CACGAGCACGCCGGTCGGCAGTCGTACGCGGTC 748 28 100.0 33 ............................ CATGGGCAGACGGTAGCGCTGGCGGGACCCCGA 687 28 100.0 33 ............................ CCCCGGTGCCGGCATGAGTGCCCCGGTCACCCA 626 28 100.0 33 ............................ GATCCGGACCATCTGCCCGATCCCCGACGCCAG 565 28 100.0 33 ............................ GTTGATGACGAGGCACCCGAAGTCATCCCGGAA 504 28 100.0 33 ............................ CTCGAGTCGCATGCTGAGCGGATCTGCGATCGC 443 28 100.0 33 ............................ CGGCGTCGGGAACGATTCGATCGTCCCGAACGG 382 28 100.0 33 ............................ GGTGTCGTACGTCGACACCTACGTCACCGACGC 321 28 100.0 33 ............................ CACCGGCAGCGGAGTCGTTCTCGACCTCGGTGA 260 28 100.0 33 ............................ TACTGGGGCCGAGTGTTGTCACCAGCCTTCATC 199 28 100.0 33 ............................ GCAGATCGCGGAGAGGAAGCCTGCGCCGTCGAC 138 28 100.0 33 ............................ CTGCGCGATCATCGGGGCAACCTGGCCTCCGAT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : | # Right flank : CCAGTGGATGGGTCCGACGAGACGGCTTCGCCGCGTGCTCCCCGCGCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 4-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000089.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ............................ CAGCGCGAAATTCAGGCTGTCGCCGCTCTTGCG 65 28 100.0 33 ............................ CTTGCGGAGCAGCCACAGCATGGTGGCCTGCTC 126 28 100.0 33 ............................ CGGCATAGGAAACGGTTTTCGCTGAGTGACTTA 187 28 100.0 33 ............................ GTTCTCGGAGTGGTGCTTCACCAAGCGGTACGT 248 28 100.0 33 ............................ CTCTTCTTTGCACTCGACGCACTCGACGTTGGT 309 28 100.0 33 ............................ GTCCTTGAACGAGACCTTCCCCTTCGACACCAT 370 28 100.0 33 ............................ CAACCATCCTGTTTAAGCATTACGTCATTACCG 431 28 100.0 32 ............................ CCCCTGGAAGGAGCCCCATCATGTACCTCGCC 491 28 100.0 33 ............................ CCGGACGGTGGGGCTCAGTGCGGTAGCGATGCG 552 28 96.4 0 ..................C......... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : TGGG # Right flank : TCGGAGGCGGTGTGCGCTTCAGCCTTCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000094.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16 28 100.0 33 ............................ CGGCGTCAGGCGTCGTTCGGTGCGGCGTGGCTT 77 28 100.0 33 ............................ TTGCCCGCGGTGCCTCCCGACGCGAGCGGCGTC 138 28 100.0 33 ............................ CGAATCATGAGGTCGATGCGCGCCAACCGCGAG 199 28 100.0 33 ............................ CCGTGGACGGCCCGCTCGATTGGATCAGACCGG 260 28 100.0 33 ............................ CAAGCTCGCGCCGACTGCGAGCAAGTACACCGC 321 28 100.0 33 ............................ CGACAGCATCCGGTGGATCCGGCGGTTCCACCA 382 28 100.0 33 ............................ CTCCCATGCGTCGGACGTAGACATGTAGGGCTG 443 28 100.0 33 ............................ CTTCAGCAGCGCTCGCCGAGGTCGGTTCGAGCA 504 28 100.0 33 ............................ CGCCCCCGGAGGCTTTTCTGGCGTACCTACTGC 565 28 100.0 33 ............................ CCGCGTCGAGCGATCCTCCGCATCGGCATGTTG 626 28 96.4 33 .........A.................. CGGGGCCAGGTCACTATCGGTGCGGTCGATCCA 687 27 96.4 34 ....................-....... CATCTGCAGGTAGTCGTTCTTCTGGACCCCGTGC 748 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.4 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GCCTGCACCTTCATCG # Right flank : CGTCAGAGCGGCACCGTGACGCCACGTCGACTCGGTCGCGAACTCCTCGATGTCCGCCCGACGAGGATGGTCCACCCGCCACCCCACCCGTTTTCGTTCCCGCGCCACGCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42-984 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000105.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c129, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 33 ............................ CCCGGTCAGCTCGGACGGGGTGATGGTCTCGGT 103 28 100.0 33 ............................ GTCGTAGTCTTCGACCTCAGTTCGTATCAGCGC 164 28 100.0 33 ............................ CGTCGAGGTGACGGATGCGACGACCACGTCTGG 225 28 100.0 33 ............................ TCCTTTGACGTTCCAGTCGATCCTCACACGGAC 286 28 100.0 33 ............................ TAGCGGGTCGTCCGACAAGACCGCGTGGAGTGC 347 28 100.0 33 ............................ GCACCACACACCGAACAAGGAGAAGAACTGTGA 408 28 100.0 33 ............................ GTCACAGCAGATGCTGTAGATGCTGTCCCCGGC 469 28 100.0 33 ............................ CGATCCAACCGCTCGAGCACCTGGTCGGTACCG 530 28 100.0 33 ............................ GCCGGCGTTGCTGGTGTCGATGCGGATCAGGAG 591 28 100.0 33 ............................ CGGGTCGACCAGCTTCTCGATCGCGGACTTCTC 652 28 100.0 33 ............................ CATCACCGGCGATGTGGCTGGCGGGAATGTGCC 713 28 100.0 33 ............................ CGTCCCGCCGCCAAGATCACCTTCGGTGACCGG 774 28 100.0 33 ............................ CCCAGGAGTCGATCGATGCCGCCAAGTCCATGT 835 28 100.0 33 ............................ CTCGATGGTGATTCCGAGGTCTCGCGCGTGTCG 896 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 957 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GATGGTCCCCCTTGGCTGCGGACTCCTCGACGAACTCTGCAG # Right flank : GTCGGGATGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1589-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000115.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1588 28 100.0 33 ............................ CATCGAATCGAAACCCCGGTAGGCATCGCCTCC 1527 28 100.0 33 ............................ CATCGCACCGTTCCTCGGCGGCAGCGTGGACGA 1466 28 100.0 33 ............................ CGACGTCGCGCGCTGCGACAGAGACGTGAACTG 1405 28 100.0 33 ............................ GGTGCCGAAATACTCGCCACCAGTGCGGATCTT 1344 28 100.0 33 ............................ CCGGGTCGGGATCGGTGTTGCATCCCATCCAGG 1283 28 100.0 33 ............................ CACAGTCTCGAGGACGTTGATGTTGTCATCCTC 1222 28 100.0 33 ............................ TGGGTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 1161 28 100.0 33 ............................ CCTCGACACCCATCGCCTGCAATAGGTCGTGCA 1100 28 100.0 33 ............................ CGCTTCCCGAACACGCCGGCGATCGACTTCATG 1039 28 100.0 33 ............................ CGATCCACGTTTTCGTCGACGCCGACGATCCGA 978 28 100.0 33 ............................ TGGTTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 917 28 100.0 33 ............................ GTCGGCGTATGTGCGGACACGGTGGCCAGCCGA 856 28 100.0 33 ............................ TCCTGACTGTCGCTGGTCCGGGGTCAAGGTTCG 795 28 100.0 33 ............................ GGTGATCGGTCAGCACGGACTGCCGCAGACACA 734 28 100.0 33 ............................ CGCGTTGAGGATCGAACCGAGGCTGCCTACGCC 673 28 100.0 33 ............................ TCGGAAGCGACCCACCACCCAAGCCCTCGATGA 612 28 100.0 33 ............................ CATCGCCTCCTGTACCGCGGCTTTGACCCCGGC 551 28 100.0 33 ............................ CCAACCATTGAACAACCCGGAGATGATGTCCGT 490 28 100.0 33 ............................ GAACAAGGGCCTGCTGAAGCAGCTGTCGCCCCG 429 28 100.0 34 ............................ TGAGCGCGCCGGTGATCCTGTCGAGCGTCCTCGA 367 28 100.0 33 ............................ GACGGGGAACCGTCCGATGCCGACCTATTCCTC 306 28 100.0 33 ............................ CACGGGCGTGAACGACGTCGTCGTCCGCACCGT 245 28 100.0 33 ............................ TCTGATCGACAGTATCGAGTCGGGGTGGCGATA 184 28 100.0 33 ............................ GCAGGTCAGCGATCATCGAGGTCCTCACTTCCA 123 28 100.0 33 ............................ CTCCCGTTTCCGTCCCGTCGGACATCGACCGGC 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ATCCC # Right flank : CCCCAGACCCGGACATCACGACACAGCACCGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2206-12969 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000013.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_c13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 2206 28 100.0 33 ............................ CGGATTGACCCCGCGGGGCACGCGGGAGACTCT 2267 28 100.0 33 ............................ CGAACAGGGTAAAGTTCGCGTTCTAACTACTGG 2328 28 100.0 33 ............................ CTGGGTGTACATCGAAATCCCGGTACCTCACCT 2389 28 100.0 33 ............................ GTCCGGCATCGGCAGCCACTGCATCGACCCGTC 2450 28 100.0 33 ............................ GCCAGTGTTTCGGCGCCCCATCAGAACGGCGGC 2511 28 100.0 33 ............................ GTGATCAGGGATCGAGTCCGGCCGCGGGGGCGC 2572 28 100.0 33 ............................ ATCGCCGACGGCGTCACCGTCACCAAGAAGGTC 2633 28 100.0 33 ............................ GATCCAGTCGAGCGCGTACCAGCCCAGTGTCGG 2694 28 100.0 33 ............................ GGGCAAGAAGGAGACCCGCTACCGGTACACGGA 2755 28 100.0 33 ............................ GACGGCTTCGGCTCCGGTACCTCCACACCCGGC 2816 28 100.0 33 ............................ GTACCGGATCATCTTGGGGAGCTGGCGCATGTT 2877 28 100.0 33 ............................ GAACAAGATCCGCGCCGCGGCCGAGAGGTTCAA 2938 28 100.0 33 ............................ CACGGACGACTGGCAGACATGGTCGACGGGCAA 2999 28 100.0 33 ............................ CGACCAGGTCTCCGTCGTGGTGAGTTCGCCGCT 3060 28 100.0 33 ............................ CGAGTGGACCTATGAAGAGTCCCCGGAGTACTC 3121 28 100.0 33 ............................ TCCGGCTTGAGGTTGTTGACGATCGCCGCAAGA 3182 28 100.0 33 ............................ CCGTCGTCGGTGACCGGCGCAAGCGGTTTGTTG 3243 28 100.0 33 ............................ CGGCATGGTCCAGACCCCGTCGTTCGGTCGCCC 3304 28 100.0 33 ............................ CGCCAAGACTGGTGGGACGCTGATCGACAAGAA 3365 28 100.0 33 ............................ CACGAAGATCAGCATGTTCGGCGGTAAGACGTT 3426 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 3487 28 100.0 33 ............................ CCACGCCGGGATCACGCCTCAAATCGTAGAATC 3548 28 100.0 33 ............................ CGCCGCAGCAACCGCGCGCCGCCGCGAATCCCA 3609 28 100.0 33 ............................ CATCGAATCGAAACCCCGGTAGGCATCGCCTCC 3670 28 100.0 33 ............................ CATCGCACCGTTCCTCGGCGGCAGCGTGGACGA 3731 28 100.0 33 ............................ CGACGTCGCGCGCTGCGACAGAGACGTGAACTG 3792 28 100.0 33 ............................ GGTGCCGAAATACTCGCCACCAGTGCGGATCTT 3853 28 100.0 33 ............................ CCGGGTCGGGATCGGTGTTGCATCCCATCCAGG 3914 28 100.0 33 ............................ CACAGTCTCGAGGACGTTGATGTTGTCATCCTC 3975 28 100.0 33 ............................ TGGGTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 4036 28 100.0 33 ............................ CCTCGACACCCATCGCCTGCAATAGGTCGTGCA 4097 28 100.0 33 ............................ CGCTTCCCGAACACGCCGGCGATCGACTTCATG 4158 28 100.0 33 ............................ CGATCCACGTTTTCGTCGACGCCGACGATCCGA 4219 28 100.0 33 ............................ TGGTTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 4280 28 100.0 33 ............................ GTCGGCGTATGTGCGGACACGGTGGCCAGCCGA 4341 28 100.0 33 ............................ TCCTGACTGTCGCTGGTCCGGGGTCAAGGTTCG 4402 28 100.0 33 ............................ GGTGATCGGTCAGCACGGACTGCCGCAGACACA 4463 28 100.0 33 ............................ CGCGTTGAGGATCGAACCGAGGCTGCCTACGCC 4524 28 100.0 33 ............................ TCGGAAGCGACCCACCACCCAAGCCCTCGATGA 4585 28 100.0 33 ............................ CATCGCCTCCTGTACCGCGGCTTTGACCCCGGC 4646 28 100.0 33 ............................ CCAACCATTGAACAACCCGGAGATGATGTCCGT 4707 28 100.0 33 ............................ GAACAAGGGCCTGCTGAAGCAGCTGTCGCCCCG 4768 28 100.0 34 ............................ TGAGCGCGCCGGTGATCCTGTCGAGCGTCCTCGA 4830 28 100.0 33 ............................ GACGGGGAACCGTCCGATGCCGACCTATTCCTC 4891 28 100.0 33 ............................ CACGGGCGTGAACGACGTCGTCGTCCGCACCGT 4952 28 100.0 33 ............................ TCTGATCGACAGTATCGAGTCGGGGTGGCGATA 5013 28 100.0 33 ............................ GCAGGTCAGCGATCATCGAGGTCCTCACTTCCA 5074 28 100.0 33 ............................ CTCCCGTTTCCGTCCCGTCGGACATCGACCGGC 5135 28 100.0 33 ............................ CCCAGACCCGGACATCACGACACAGCACCGGTG 5196 28 100.0 33 ............................ TTTGACGGGAACGACCCGCCGTCGCTGATCGCG 5257 28 100.0 33 ............................ CCAAGGTGGGCCCTGCGGCAGTATCTCTCGCTT 5318 28 100.0 33 ............................ CGACAACGTGATCATCCACGGCACGACATCGAC 5379 28 100.0 33 ............................ GGTTGGGTGTTGTAGTGCGCATCGGTCAATTCC 5440 28 100.0 33 ............................ TCCAGCGCACCAGGATGCGCGGCCTCGATCTTC 5501 28 100.0 33 ............................ ACTCCTTCCGGATCACGAACTCATCAGCATGCA 5562 28 100.0 33 ............................ TACGGCGATCCACTGACCAGCCGCAAGCAGTGT 5623 28 100.0 33 ............................ GCAGGCTGGTCCGTATCAGCAGGTGATCGACTC 5684 28 100.0 33 ............................ GCCCCGGTGAGCATCCAACCCAGATACGACGGA 5745 28 100.0 33 ............................ GTTCGATCCGTTCAAGCCGTTCCAGGACCAGTA 5806 28 100.0 33 ............................ TCTCCTCGTCGGAGTCGGGGTTGGTGATGAACC 5867 28 100.0 33 ............................ CGGATACCGGACTGGTAGTTGCCGAGGATCGCA 5928 28 100.0 33 ............................ CACTGGCGCCGACCTGGCGTCGGCTACGTCGGG 5989 28 100.0 33 ............................ CGGCTACGACCACCGCAAGCCGACCGCCAAGGG 6050 28 100.0 33 ............................ CCGTGACAGAACAAGACCAGTAACGACTTTGTC 6111 28 100.0 33 ............................ CCCCGGGAGGCGATGCCTACCGGGGTTCCTTCG 6172 28 100.0 33 ............................ TGTCGCGCGACTCCTTCGGGATGCCCTGCATCT 6233 28 100.0 33 ............................ CTGTACACCGAAGCCGGGTTCGGTCCGCACGGG 6294 28 96.4 33 ..................C......... CTCGGGTCTGGTGTGGACGCGCCCGGCGACCGA 6355 28 100.0 33 ............................ CGGCTACGGCACTCACGGTGCGGGCGGTATCGG 6416 28 100.0 33 ............................ CACGAGCACGCCGGTCGGCAGTCGTACGCGGTC 6477 28 100.0 33 ............................ CATGGGCAGACGGTAGCGCTGGCGGGACCCCGA 6538 28 100.0 33 ............................ CCCCGGTGCCGGCATGAGTGCCCCGGTCACCCA 6599 28 100.0 33 ............................ GATCCGGACCATCTGCCCGATCCCCGACGCCAG 6660 28 100.0 33 ............................ GTTGATGACGAGGCACCCGAAGTCATCCCGGAA 6721 28 100.0 33 ............................ CTCGAGTCGCATGCTGAGCGGATCTGCGATCGC 6782 28 100.0 33 ............................ CGGCGTCGGGAACGATTCGATCGTCCCGAACGG 6843 28 100.0 33 ............................ GGTGTCGTACGTCGACACCTACGTCACCGACGC 6904 28 100.0 33 ............................ CACCGGCAGCGGAGTCGTTCTCGACCTCGGTGA 6965 28 100.0 33 ............................ TACTGGGGCCGAGTGTTGTCACCAGCCTTCATC 7026 28 100.0 33 ............................ GCAGATCGCGGAGAGGAAGCCTGCGCCGTCGAC 7087 28 100.0 33 ............................ CTGCGCGATCATCGGGGCAACCTGGCCTCCGAT 7148 28 100.0 33 ............................ CAGTGGATGGGTCCGACGAGACGGCTTCGCCGC 7209 28 100.0 33 ............................ CAGCCGCGCACTCTTGTAGGGGTTCATGCAGGT 7270 28 100.0 33 ............................ GGCCGCGGCGTTGAACCCGAGCGGCGACTCCTC 7331 28 100.0 33 ............................ GGCCGCGGCGTTGAACCCGAGCGGCGACTCCTC 7392 28 100.0 33 ............................ GATGGACCCGTCGTCCATGCCGAGCGCCCTTTC 7453 28 100.0 33 ............................ GTGTCCGCGGCGGTCGACGCGGCTGTCCCGCAG 7514 28 96.4 33 .C.......................... CTCGGCGCGACGCTCGGGTGTCGACGGCTTCTT 7575 28 100.0 33 ............................ CGGCATCGGCGTGATCGACGCCGGATACCGCGG 7636 28 100.0 33 ............................ GCAGCACCAGTGAAGCTGTCGCCATCGGGCCCG 7697 28 100.0 33 ............................ CCCGCATCCACGCCCCGCACCAGGTGATCCCAC 7758 28 100.0 33 ............................ GAACTCGACGTTCGCTGCTCCGTAGAGGAGTTC 7819 28 100.0 34 ............................ CCCCGGCGCTAACCCTGGGTCTAACCCTTGGCCG 7881 28 100.0 33 ............................ CACCGGCACCATCGAAGGCCGCCTCGACAGCAT 7942 28 100.0 33 ............................ GATCATCGACGGTGCCCCGTGGTGGGTGGGCGC 8003 28 100.0 33 ............................ CAGGGCACCGACACCGATGATCGCGTTGCGCTT 8064 28 100.0 33 ............................ CCGGATCGTCTCATTCGGCAGGTACAGCGTCTC 8125 28 100.0 33 ............................ CGGCTTCTCGGTCGCACCGACCCGATCGAACAC 8186 28 100.0 33 ............................ CGAAGTCCGTCCGAGCGCGGGGGCCGTTGCTGT 8247 28 100.0 33 ............................ CGCCGCCTGCGGGTGCAGATGGGGCAGGAACCC 8308 28 100.0 33 ............................ CTCATTCGAATACTGCGGACGAGTGTTGTCACC 8369 28 100.0 33 ............................ CCGCGGTGCCTCGTGGACCTCGATGCGGCGGAA 8430 28 100.0 33 ............................ GTCGAAGTGGTATGAGGCGAATCAGGATCCGAA 8491 28 100.0 33 ............................ CGCATTTCTGACGCGGCCATCTCAGCAACCGAC 8552 28 100.0 33 ............................ GATGATGCAGCCGATGATGTACGTCTTGCCGAC 8613 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 8674 28 100.0 33 ............................ CCCGGAACGCGACATCCTGTTGCCGTTCGCGGT 8735 28 100.0 33 ............................ CGTCAACCTCCTTAACCTCTTGAAGGCGAATCC 8796 28 100.0 33 ............................ CATGAACGCTGCTCTCGGCCGCATCGGCGCGAG 8857 28 100.0 33 ............................ CCCTGTCCGCCAAGGACTACGAGTGCCCAACCT 8918 28 100.0 33 ............................ TAGCTTGCTCGACGGTCGGCATGTCGTAAGACG 8979 28 100.0 33 ............................ CTGTCCAGCGCGTTGAAAGCTGACTCCGACGAT 9040 28 100.0 33 ............................ CATGATCGCCGCGCTCGGTCGTCTCGGCGCTGC 9101 28 100.0 33 ............................ GTCGAGCAGTGTGCGGTCGTCGTCGGTCATGCG 9162 28 100.0 33 ............................ GGTCTTGGCGTACAGCGGCTTTCTCGCGGGGTC 9223 28 100.0 33 ............................ CGGCGCACCACCGCCGCATGAACTTCCGGTCCC 9284 28 100.0 33 ............................ TGCTGCTCCGGGATTCAACCGGACGGTGGGGCT 9345 28 100.0 33 ............................ CCCTTGGCTGCGGACTCCTCGACGAACTCTGCA 9406 28 100.0 33 ............................ CCCGGTCAGCTCGGACGGGGTGATGGTCTCGGT 9467 28 100.0 33 ............................ GTCGTAGTCTTCGACCTCAGTTCGTATCAGCGC 9528 28 100.0 33 ............................ CGTCGAGGTGACGGATGCGACGACCACGTCTGG 9589 28 100.0 33 ............................ TCCTTTGACGTTCCAGTCGATCCTCACACGGAC 9650 28 100.0 33 ............................ TAGCGGGTCGTCCGACAAGACCGCGTGGAGTGC 9711 28 100.0 33 ............................ GCACCACACACCGAACAAGGAGAAGAACTGTGA 9772 28 100.0 33 ............................ GTCACAGCAGATGCTGTAGATGCTGTCCCCGGC 9833 28 100.0 33 ............................ CGATCCAACCGCTCGAGCACCTGGTCGGTACCG 9894 28 100.0 33 ............................ GCCGGCGTTGCTGGTGTCGATGCGGATCAGGAG 9955 28 100.0 33 ............................ CGGGTCGACCAGCTTCTCGATCGCGGACTTCTC 10016 28 100.0 33 ............................ CATCACCGGCGATGTGGCTGGCGGGAATGTGCC 10077 28 100.0 33 ............................ CGTCCCGCCGCCAAGATCACCTTCGGTGACCGG 10138 28 100.0 33 ............................ CCCAGGAGTCGATCGATGCCGCCAAGTCCATGT 10199 28 100.0 33 ............................ CTCGATGGTGATTCCGAGGTCTCGCGCGTGTCG 10260 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 10321 28 100.0 33 ............................ GTCGGGATGCACGATCATCTCAACCTCAACCAC 10382 28 100.0 33 ............................ CGCGCTGTGTGATGGTCTTGATAACGTTGCTGC 10443 28 100.0 33 ............................ CTTCGCACCGCGGGTGATTCTCGGATCGAACGG 10504 28 100.0 33 ............................ CGTGTACCCGGGCGATGGGATGCGCTTCAAGGG 10565 28 100.0 33 ............................ CTAGCTGCGGCGTTGATCCCGTACGACTCATTG 10626 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 10687 28 100.0 41 ............................ GTCGTCCAACTTCTCCATGCGGGTGCTCACGATCTCACTCT 10756 28 100.0 33 ............................ CACGGTGCCCTCGAAAAGCCGTAGGCCCTCGCG 10817 28 96.4 33 ...............T............ GGCCGAGGACCAGGCACTAGCCGAGCATCGTAA 10878 28 100.0 33 ............................ CAACCTCAAGCCGGATTCGGCACTCTATCGGCG 10939 28 100.0 33 ............................ TGCGGCTGCAGGCTCTTCGACGATGGGGTCCGC 11000 28 100.0 33 ............................ CGCGCCCTGCTCCTTCTTGGTCAGCACGGAGTC 11061 28 100.0 33 ............................ CGGCATCTCGCCGATCTCATCGACCTTCGCGTA 11122 28 100.0 33 ............................ GACGTGGGCGGACGGTAGTGCTGGCGGCACTCC 11183 28 100.0 33 ............................ TCCATCGATTCCATCGTCGGACCGTAGAACGTC 11244 28 100.0 33 ............................ CAGTTCTTCACCGATCCGTTTGTGGCCGCTGAT 11305 28 100.0 33 ............................ CTCGGGAGGCTCGAATGTTGGCTCCTCGAAAAC 11366 28 100.0 33 ............................ CAAGGGCAAGATCCCTTTCGATAAGCAGATCGG 11427 28 100.0 33 ............................ CCTTTTGCCCGGACCAATCGCCGGAATTCCTCT 11488 28 100.0 33 ............................ CGCCAGGTACAGGCGTTTGCGGATAGCGGGAGT 11549 28 100.0 33 ............................ TCCGTCAGCCATTGCCGCCTCCACAGAGGATGA 11610 28 100.0 33 ............................ ACTCCGGAGCATACGGTGGTCCAGCACCATCGA 11671 28 100.0 25 ............................ GAATGCTTGGGCGGTGGTGCGTATC Deletion [11724] 11724 28 100.0 33 ............................ GCAAGTGATCGATCGCGCCAAGTCCATGATCGG 11785 28 100.0 33 ............................ CTCGTCCCCGCGCCAGGCCACGGCTCCGGATCG 11846 28 100.0 33 ............................ CAGCGCGAAATTCAGGCTGTCGCCGCTCTTGCG 11907 28 100.0 33 ............................ CTTGCGGAGCAGCCACAGCATGGTGGCCTGCTC 11968 28 100.0 33 ............................ CGGCATAGGAAACGGTTTTCGCTGAGTGACTTA 12029 28 100.0 33 ............................ GTTCTCGGAGTGGTGCTTCACCAAGCGGTACGT 12090 28 100.0 33 ............................ CTCTTCTTTGCACTCGACGCACTCGACGTTGGT 12151 28 100.0 33 ............................ GTCCTTGAACGAGACCTTCCCCTTCGACACCAT 12212 28 100.0 33 ............................ CAACCATCCTGTTTAAGCATTACGTCATTACCG 12273 28 100.0 32 ............................ CCCCTGGAAGGAGCCCCATCATGTACCTCGCC 12333 28 100.0 33 ............................ CCGGACGGTGGGGCTCAGTGCGGTAGCGATGCG 12394 28 96.4 33 ..................C......... TCGGAGGCGGTGTGCGCTTCAGCCTTCGCGATG 12455 28 96.4 33 ..T......................... CACGACACAGACATCCGACGCACACGGCCCGAT 12516 28 100.0 33 ............................ CAAGCGCGGCAGCGACGGCGACAACGGCCGCAT 12577 28 100.0 33 ............................ CCCGTTGAGGACCACGAGCGCGACCTGTGTCGG 12638 28 100.0 33 ............................ CACTGCTTCTGCGATGCGCGCATCTCGAGGCTC 12699 28 100.0 33 ............................ CTTCGGAACCACCGTCAAGGCGGCGTATCAAGT 12760 28 100.0 33 ............................ CGGAATCATGATGCTTAACCATGATCAAGCCAT 12821 28 100.0 33 ............................ CTTCGCGTTGCCGATCCAGGTCGGTCCTCGCGG 12882 28 100.0 33 ............................ CGAGACAACGTTCTCGTCTGCAACAACCTGGTC 12943 27 92.9 0 .....-...................C.. | ========== ====== ====== ====== ============================ ========================================= ================== 177 28 99.9 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGCCGGTCCGCCCGACAGGATCAGCGCGGCCGGATTCTTGGCCTTGATCTCTTCCAGCGTCGCGTCGTGCGCGATCACTTCCGAGTAGATGCGGGCCTCGCGAACGCGGCGAGCGATCAGCTGCGCGTACTGGGCTCCGAAGTCGACGACGAGTACGGGACGCGGGTGGTCGGGGGATGTTTCCGTCACGACGTGAAGTCTATCTTGCGCGCGATCGTCGCTGGTGGTCCGGACCAGCCGCGCTCAGTGGCGGTGCACGGGCTCCGACGTCGCATCGATCGCACCGCAGTGCGATCGATGCGTGGATCGACGCGCTCTGAACCAACCTCCTGCTCCGGAAAGCCGTTGCGATGCCTCTGTTAGCTCCCCTGGTTCCGCTCGACGCCGATCAACGATTCGAAACCGAAATGGGGCCGGACACCGTGGGGAATTCGCGATCGCGGTCGGCTAAAGTGATTGAAGAATCGCTTCCCGGCGTGCGAACATGCAGGTCAGGAAGT # Right flank : CGGCCTGCGCCGGGTCGGTCTCTATCAGGTCATCGATCTCTGCCTCGATCGACGCGAGCGTCACCCACGGCGACGAGATGTAGACCTCCTCGAGGATCTTCCGTCGGTAACCAAGCTCTGCCGTACGTGCCGGAGGGTGTGAGTGTCGAGTACCTCGAGCTCCGCAAGGATTGTCGTTCGCGTCGGTGTCCGCGCATCACGGATCGCCTGCGCGCCGGCCTTCGTGAACAGCCGATCCTGCTGCGCGCGCGAGAGCCCGTCGAAATGCACGCGGGCATCGAGGGCGGATCACGAAGGCCGAAGCCGAGGCGATCCGAAACTCACGCGGAGGACGAGCTCGGGCGCGGTCGGTGATGCCGGATGCGATCTATCGGGCCGCGGGCGGCGATCGCGACCTTGCGGTGGAACTGCTGCATCAGCACGGGTACATGATGGACCGGCCAGGCAGGTCTCGCACCGTTCGCGGTGGCGCGGAAATGACTCGACCGAAGGCAGCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24542-27376 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000013.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_c13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 24542 28 96.4 33 ...........................A CCCGCGAGGAATGGGACCAGCACTACGCAGAGG 24603 28 96.4 33 ...........................A GGTTCACGCGGTAAACGGGGATACCAGGCAGCG 24664 28 100.0 33 ............................ GGTCGCGATCCCCGAAGGGCATGTCGGGATCAT 24725 28 100.0 33 ............................ GTAGCGGGTCGTCGTCATGCCTAGTTCGGTACG 24786 28 100.0 33 ............................ CTCGGTTATGGGGTAGCCGCGCTCCAGCCCGCG 24847 28 100.0 33 ............................ CAGTAGCCTGAACTTCACATCGAGTTTCTTCAG 24908 28 100.0 33 ............................ CAAGGGACAGATGACACCGCTGGTGATGGGGAC 24969 28 100.0 33 ............................ CTCCCGTAGTGCTGCACGTGGATACGGTCCCCG 25030 28 100.0 34 ............................ ATCCGGAAGACCGGAGGCGCGAGCAAACAGCTTC 25092 28 100.0 33 ............................ GGGCCAGGCCCCGGAATGCCCGGGGGCCTGGCC 25153 28 100.0 33 ............................ CGTTGCCCGCGCATCAGTCTGGTGATCTCATCC 25214 28 100.0 33 ............................ TGGGATGCGGACCATGCCAAGTGGGAGAAGTCG 25275 28 100.0 33 ............................ GGCGTACGACGCCAAGATCGCCGCTCTGTCCGC 25336 28 100.0 33 ............................ CTGAAAGCAGTGCCCGCATCCATCGGCTTCGCG 25397 28 100.0 33 ............................ CGGCAGCGTCATAGATATGCCTCCAAATCGTCT 25458 28 100.0 33 ............................ CGGCATGGAGCTGCCCGCCGGGTCATACGTGCT 25519 28 100.0 33 ............................ GTGTGGACCGTGCTGGTCCGCACTACCTCCTAC 25580 28 100.0 32 ............................ TGCTCACGCCCATACAGGGTCTCTGTGGGTCG 25640 28 100.0 33 ............................ GACGAGCGGATCGACACGTCTCGTCCCGATGGT 25701 28 100.0 33 ............................ CTCACCGATCTGCGCCGCCGGCACCCCGGCTTT 25762 28 100.0 33 ............................ CTCCCAGCCGACGTTCGCCAGCCGCGTGCTCGG 25823 28 100.0 33 ............................ CGTCGCCGACGTCGAACTGACAGTCTCACCGAA 25884 28 100.0 33 ............................ CCTCGGTCCTCCCCAGCCGGCCACCGATCCCCG 25945 28 100.0 33 ............................ CTCGGGCTGTCGGTCACGCGGTACTGGCAGAGG 26006 28 100.0 33 ............................ GGTGGCACGCACCGACTGCGGCAGCGGGAACAG 26067 28 100.0 33 ............................ CACGGACGACTGGCAGACATGGTCGACGGGCAA 26128 28 100.0 33 ............................ CTGGGTCGCCGTCGCATTGACGGCAGTCCTCAT 26189 28 100.0 33 ............................ CGCCGCATGATCATGCAACACCGGCCTCCATTC 26250 28 100.0 33 ............................ TGTGTCGTCGGTTGGTACGCCGAAGATCACCAC 26311 28 100.0 33 ............................ TTCGAATCGGCGTGCGCCGCCTGCACCTTCATC 26372 28 100.0 33 ............................ CGGCGTCAGGCGTCGTTCGGTGCGGCGTGGCTT 26433 28 100.0 33 ............................ TTGCCCGCGGTGCCTCCCGACGCGAGCGGCGTC 26494 28 100.0 33 ............................ CGAATCATGAGGTCGATGCGCGCCAACCGCGAG 26555 28 100.0 33 ............................ CCGTGGACGGCCCGCTCGATTGGATCAGACCGG 26616 28 100.0 33 ............................ CAAGCTCGCGCCGACTGCGAGCAAGTACACCGC 26677 28 100.0 33 ............................ CGACAGCATCCGGTGGATCCGGCGGTTCCACCA 26738 28 100.0 33 ............................ CTCCCATGCGTCGGACGTAGACATGTAGGGCTG 26799 28 100.0 33 ............................ CTTCAGCAGCGCTCGCCGAGGTCGGTTCGAGCA 26860 28 100.0 33 ............................ CGCCCCCGGAGGCTTTTCTGGCGTACCTACTGC 26921 28 100.0 33 ............................ CCGCGTCGAGCGATCCTCCGCATCGGCATGTTG 26982 28 96.4 33 .........A.................. CGGGGCCAGGTCACTATCGGTGCGGTCGATCCA 27043 27 96.4 35 ....................-....... CATCTGCAGGTAGTCGTTCTTCTGGACTTCGAGCA 27105 28 100.0 33 ............................ CGCCCCCGGAGGCTTTTCTGGCGTACCTACTGC 27166 28 100.0 33 ............................ CCGCGTCGAGCGATCCTCCGCATCGGCATGTTG 27227 28 96.4 33 .........A.................. CGGGGCCAGGTCACTATCGGTGCGGTCGATCCA 27288 27 96.4 34 ....................-....... CATCTGCAGGTAGTCGTTCTTCTGGACCCCGTGC 27349 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 47 28 99.5 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACCGGCAGGGGAATGTCGTCGGCGGCACCAACTTCGCGCCCGAGGATATGGAACCGCCGTGGTAGTCGTCGTGCTCACGAGTTGCCCGCCGAAGCTGCGCGGTCATCTGACGCGGTGGTTGCTCGAGGTGAGTGCGGGGGTATACGTCGGTCACGTGCCCGCGCGAGTCAGGGACCTCTTGTGGTCGCAGATCATCGAGTACGTGAGCAACGGCAAGGCCATCATGGTGCACAGTTCAGATGGAGAACAACGGCTTGCGTTCAGAACTCACCTCCATGAATGGGAGCCCGTCGACCTGGATGGAATCACCCTGATCCGCCGCCCGACCGACAATGCGACCACGCGCGGCCGCGTCCGCAAAGGATGGAGCACAGCGTCGCAGATGCGGCGGCGTCGACGCGGGTAGACGCACATCAGCGCTCCGCGCGCATTCCGCAGCACGACCGCGCAAAGTGATTCCAGAACAACTTCTCGAGTTACGTAGTCGCTGTTCAAGAAGT # Right flank : CCGTCAGAGCGGCACCGTGACGCCACGTCGACTCGGTCGCGAACTCCTCGATGTCCGCCCGACGAGGATGGTCCACCCGCCACCCCACCCGTTTTCGTTCCCGCGCCACGCTCCCGCCCAGCCCGCAATAGGTATCTGTGCCACCCGCCAAATACCCTTGACCCTGTGACGCACCTTTCCTCCGACACCGAAGGCCGCCGCTCGCGCTGGTCGCTGACCATCGCCGACCTGGCTCAGGCCGCCGTCTTCGCCGCGCTCATCGCGGTCCTCGGCCTCCCCGGGCAGATCAATCTCGCAGGCGGAGTCCCGATCACGCTGCAGACGCTCGGCGTGATGCTGGCGGGGGCGGTACTCGGACCGAAGAAGGGCACGCTCGCGGTCGTCATCTTCATGGTGCTGGCCATCGCCGGGCTGCCGATCCTGGCGGGCGGACGCACCGGCATGGTGGCGCTCGGCTCCCCGACCGCAGGCTACTTCGTCGGCTTCCTGCCCGCGGTGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 948-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHVQ01000121.1 Gordonia sihwensis strain MTZ 096 Gordonia_096_rep_c145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 947 28 100.0 33 ............................ CCCAGACCCGGACATCACGACACAGCACCGGTG 886 28 100.0 33 ............................ TTTGACGGGAACGACCCGCCGTCGCTGATCGCG 825 28 100.0 33 ............................ CCAAGGTGGGCCCTGCGGCAGTATCTCTCGCTT 764 28 100.0 33 ............................ CGACAACGTGATCATCCACGGCACGACATCGAC 703 28 100.0 33 ............................ GGTTGGGTGTTGTAGTGCGCATCGGTCAATTCC 642 28 100.0 33 ............................ TCCAGCGCACCAGGATGCGCGGCCTCGATCTTC 581 28 100.0 33 ............................ ACTCCTTCCGGATCACGAACTCATCAGCATGCA 520 28 100.0 33 ............................ TACGGCGATCCACTGACCAGCCGCAAGCAGTGT 459 28 100.0 33 ............................ GCAGGCTGGTCCGTATCAGCAGGTGATCGACTC 398 28 100.0 33 ............................ GCCCCGGTGAGCATCCAACCCAGATACGACGGA 337 28 100.0 33 ............................ GTTCGATCCGTTCAAGCCGTTCCAGGACCAGTA 276 28 100.0 33 ............................ TCTCCTCGTCGGAGTCGGGGTTGGTGATGAACC 215 28 100.0 33 ............................ CGGATACCGGACTGGTAGTTGCCGAGGATCGCA 154 28 100.0 33 ............................ CACTGGCGCCGACCTGGCGTCGGCTACGTCGGG 93 28 100.0 33 ............................ CGGCTACGACCACCGCAAGCCGACCGCCAAGGG 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGAGCGGGGATGGTCCCTCCCGTTTCCGTCCCGTCGGACATCGACCGG # Right flank : CCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //