Array 1 64566-63378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCGU010000048.1 Escherichia coli strain GCPRC21A Contig_48_81.0634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64565 29 100.0 32 ............................. ATCGAGCAGGGAATTATTTCTGATACCGGGGA 64504 29 100.0 32 ............................. GTTGAAGCCTTTGGTTGTAAATTTTTGATCGA 64443 29 100.0 32 ............................. ATGTCCGCGATCTGATCGGGTAATTTATGCTA 64382 29 100.0 32 ............................. GAGCTTACTTTCCTCCGGCGCTTTAAAAGCGA 64321 29 100.0 32 ............................. GCTGGCTGATTCAGCGTGACGGGGCGAAATAT 64260 29 100.0 32 ............................. ATCCCGAGGACTTTTATGTCGACGCGGAGCCG 64199 29 100.0 32 ............................. TCAGCGGCGTGATCCCGTTTCGTAATGTTGAA 64138 29 100.0 32 ............................. CCGCCCCCATATGGGCTAAAGGGGGCGGCAGG 64077 29 100.0 32 ............................. ACAGCGACGACAACGCACCGTTTAACGTGTCA 64016 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 63955 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 63894 29 100.0 32 ............................. CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 63833 29 100.0 32 ............................. CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 63772 29 100.0 32 ............................. GTGATGAGGAAAAGCTAATAGAATGGCGACGC 63711 29 100.0 32 ............................. GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 63650 29 100.0 32 ............................. TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 63589 29 100.0 32 ............................. GCATTTTCGATATCAAACTTTCTGCGCTCCAG 63528 29 100.0 32 ............................. CAGAGCTGGGATCGGGAAAAACAATTTAATGA 63467 29 100.0 32 ............................. CCAGTCGAAGATCTGGACGCGTGGGGAAAAGC 63406 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCTCTCCGCGCTTACGTGGACGGCTCGAGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90785-90268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCGU010000048.1 Escherichia coli strain GCPRC21A Contig_48_81.0634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90784 29 100.0 32 ............................. GTTATTTAACGCCGTTGTGTTCCAGACTGAAA 90723 29 100.0 32 ............................. AAAATAACCAGTCGGTTTTATATTGGGTCCTA 90662 29 100.0 32 ............................. CTTGCGCCGAATAATCAGAAGCACTATCAGCC 90601 29 100.0 32 ............................. ATGTGCGTACATTTATCACTCCTGTCGTGTTC 90540 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 90479 29 100.0 32 ............................. CAGCTGACAAAAAATATTTGCAGATAAGTAAA 90418 29 100.0 32 ............................. GCACAAAAAAACCCGCGCGAGGCGGGCTAATT 90357 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 90296 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTATCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGACAAGTTCACAATTATCGATACAAAAAATAAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAATACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //