Array 1 7028-6145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDX010000070.1 Escherichia fergusonii strain EF18 18-1-p_(paired)_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7027 29 100.0 32 ............................. GCGGCATTCAGTTTTATTTTCGGATTCATAGG 6966 29 100.0 32 ............................. TGATCGAGCATATGCGCGAAAGCATGAATATG 6905 29 100.0 32 ............................. CCGTAAACGCGCAATAGAAATACTGGCCCCGC 6844 29 100.0 32 ............................. AATATCGTCTATATTTGGCGTCTCTCTTGAAA 6783 29 100.0 32 ............................. TATGCCGTATTCTCCGCCGTCGCTGGTGGCGC 6722 29 100.0 32 ............................. AGGAATTGAACTTTGCATTCAAACAACTCAAT 6661 29 100.0 32 ............................. CTGCCGGATCATCAAGATTTGCGGGATTAATG 6600 29 100.0 32 ............................. ATACTCACAAAACATTTTAATTTGTGGGTAGC 6539 29 100.0 32 ............................. ATTCTGGAGATATAGAGAGATGTCGCGGTCGC 6478 29 100.0 32 ............................. GTAGCACCAGTAACGAGCACAGTACGAGGCTT 6417 29 100.0 32 ............................. TCCTTGTGGGTGAGAGTGATATCGAACGACGG 6356 29 96.6 32 .....................A....... CCGAGGGGCCGAGTCGTGTGCGCCCTGCAATA 6295 29 93.1 32 .........A...........A....... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 6234 29 89.7 32 ................T.A..A....... GCTTCAGATACATATACTTTAAGTGCAGCGCT 6173 29 72.4 0 ........A..T...A.AC.AA...T... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.8 32 GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAGTTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGCCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTACGCATT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1890-2466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDX010000034.1 Escherichia fergusonii strain EF18 18-1-p_(paired)_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1890 29 100.0 32 ............................. ATTCTCTATGATTCGTAAATTAATTATAGATA 1951 29 100.0 32 ............................. ACGCCAAGAATGGTAATGCTCTTGCTAACTTC 2012 29 100.0 32 ............................. AAAAATATGCCAGCGTCACGTAATGTTTCGCA 2073 29 100.0 32 ............................. GATTTCCCGTAGTACTCACTGCCATCTGCGGC 2134 29 100.0 32 ............................. AGGTAAATTAATATAAATGCATCTGCCGTGAA 2195 29 100.0 32 ............................. CCGCGATGATGTTTAACTGTCGGGGCAAAATG 2256 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 2317 29 100.0 32 ............................. CCTCTGGATTACTACCGATAACTAACACTGAA 2378 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 2439 28 82.8 0 ............T.........-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATGACTCACTCTGGTCCGGTGATTTAGTCGGGTCAGAAGAACCGGATGAACAAACATTCAGTCAGGGATGTGCGGCCTGGTTTGCCGACAGTAACAAGAAGGCGCTACTGGCTGAAATTGGCGTCGGCACGCTGGATCAGGCGATGATGGCGGTGATGCCGTTTAAACATAATAATCTGCGGCTTCTGGGACTGAGTAACAAAATCCTGCTGGCTGATGAGATCCATGCCTGTGACGCTTACATGTCGTGCATTCTTGAAGGATTGATTGAGCGGCAGGCGCGTGGCGGAAACAGCGTTATTTTGCTTTCTGCCACGTTATCTCAACAGCAGCGCGACAAACTCGTTGCTGCCTTTGCGCGTGGTGCAGAGGGCCAGCAAGAAGCTCCGTTCCTGGAAAAGGATGATTACCCCTGGCTGACGCACGTTACGAAATCGGATGTGCATTCACACCGAGTAGCAACGCGCAAAGACGTTGAGCGCAGCGTGAGTGTGGGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //