Array 1 1095798-1098707 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017558.1 Halopenitus persicus strain CBA1233 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1095798 30 100.0 35 .............................. GTCTCTCCGACGACGTACGGACACGTCGGCGAAAA 1095863 30 100.0 36 .............................. AATAATGTAACTGTAGAGTCAAACGCCACGCTAAAC 1095929 30 100.0 36 .............................. ACCACCCCGTCAACCACCGTCGGCGAGGAGAAAACG 1095995 30 100.0 36 .............................. GACCAAACAACCAGTCCAACTGAGAGAGATGCCGGC 1096061 30 100.0 36 .............................. GACGAGCGGCTGTTCGACGTGCCGAGCGACGATGCC 1096127 30 100.0 36 .............................. GAACAGGGCGAACCCGTGACGCTGTCGCTGTCGTGT 1096193 30 100.0 35 .............................. GACGGCGACGCCGAGGACGTCGAGATCCAGATCGA 1096258 30 100.0 36 .............................. CCCCGTCCCTTTTTGCCGTCTGGACGTCTATTCGCG 1096324 30 100.0 36 .............................. GACCACAGACACGAACAGCAGCACGACCGACACCGA 1096390 30 100.0 35 .............................. GTGTAACATCATCTACAAGTACCTGACCATCGAGA 1096455 30 100.0 36 .............................. TTTAGCGGCCCTGCACACGGCGAGGGAGGGCGCGCG 1096521 30 100.0 35 .............................. ACGAGCGGCCCTGCACACGGCGAGGGAGGGCTCGC 1096586 30 100.0 36 .............................. ATATAGAAGTGTAGCCGGGGACCACCGGGCTACGGA 1096652 30 100.0 36 .............................. AAGCAGCGGTATTCGGGAACGACCGCGGACCGGGCG 1096718 30 100.0 34 .............................. ATCCGTGAAGTCGCGGTCGACGGGACTGATAACC 1096782 30 100.0 36 .............................. GCACGGGTCAAGGCGACCGCCGAGACGCCAGACGGT 1096848 30 100.0 36 .............................. GGCGATCCGTCGGTCGCCGCGGGCGACAACTCGATC 1096914 30 100.0 37 .............................. GCGATCGAAGCATTAGTTCAACGGGAAGGGAAACGGC 1096981 30 100.0 37 .............................. GACCGGCGAGGACTTCAGTATCACCGTGGAAGCCGGC 1097048 30 100.0 35 .............................. TCGTGATCGACGAGCCCGCCGAGCCGGTCGATCGA 1097113 30 100.0 35 .............................. TCCTGGATGTCGTCGGCGATGAACGTGTACGTCCG 1097178 30 100.0 35 .............................. CTCGCTGGGCGGGGGCTCTCGACCACAGCACTCCA 1097243 30 100.0 34 .............................. TACTCCTGCTGGGAGGAGGGGCTCGACCTGCTGG 1097307 30 100.0 33 .............................. GGGACGCGCTCGCCGTTCCTCGCCGCCGCGATG 1097370 30 100.0 35 .............................. GTCCTCCGGAAGGTCGAGCGTGTCCCACGCCAGGA 1097435 30 100.0 36 .............................. GCGCGCTTGTCGGCGTTCGTCAGGCTCGCGTGCCGG 1097501 30 100.0 36 .............................. GACGAGAAGGGAGAAGCGTTAGACGCCGAGACAGGC 1097567 30 100.0 36 .............................. GACGAGGACCACGGGGCGTCAGAAGGTAATCAAAAC 1097633 30 100.0 36 .............................. CGGTTGCGTATGAACGGGCCTTTGAAACGAATTACG 1097699 30 100.0 35 .............................. TCGCGATCGCCCGTTTCCTCGGCCGCCCTCGCGGC 1097764 30 100.0 34 .............................. TGCGGCGCCGACGTCTCCGCGCAGAAGGGCAACG 1097828 30 100.0 34 .............................. ACCGGCCAGAAGATCGATTACAGCCACCAGCGCG 1097892 30 100.0 36 .............................. ACGCCGCGAATATCTCCCGGAACGCCGCTGGTTCCT 1097958 30 100.0 35 .............................. ACCACGCGGGAGGCCGTCTCGAGGACGTGGATCCA 1098023 30 100.0 35 .............................. GCCTCCGTTTGCGACCCGTCGTCGTGCATCCAGAC 1098088 30 100.0 37 .............................. TGGTTGATCCATCTGCCCCACATATCCGTTTCAGTCG 1098155 30 100.0 33 .............................. GATATTACGGAGCGGAAAGTCCAACCCGGTCAA 1098218 30 100.0 33 .............................. GGCCCGGACGTATCGGTTTCCACTTCAACCGTT 1098281 30 100.0 36 .............................. ACGCGCTTCGAGGCGTCGTCGACGGCCATCAACCGA 1098347 30 100.0 37 .............................. TCGGATGCCCCCACGCCGGGGGAGTCCCGCGGCCGGC 1098414 30 100.0 35 .............................. AACGAGGTGTTCGTCGAGGCGATCCTCCCGCTCGT 1098479 30 100.0 36 .............................. TGTTCAGACCGCCTCGTCGACGACTACAAAGCCTCG 1098545 30 100.0 36 .............................. TGATGTCGGACGACGAGTTCGACGTCTTCGAGGCCG 1098611 30 100.0 37 .............................. TTGGATGTTAGTCCGAGCATTGCACGGTCTCTTGGTG 1098678 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 35 GTTTCAGAAGAACCCTTGTGGGTTTGAAGC # Left flank : GAGTTACAAGACGCTCGTCCGCACGGACGTTCTGAGTCTGAAGAAGCACATATTAACCGGAGAAGAATATCACGCAACGGAACGGTGGTGGTGAGATGCACGTTATTGTTGTCTATGACGTTCCTGCGGACAGGACGCGCGTGTACCGAAAGCTGCTCCGGCGCCGGCTAGAGCATCTTCAGTACTCCGTTTTTTACGGTGAGCTCACCGAGGGACAGGTTACTACAATGAAGAACGATATTCAAAAGAAACTGGAACCAGATGATTCAATCGTCGTATTCGAATCCTCAAATCCCGCTGCGTTCGAGTTTTCGACTTTCGGCGATGTCGATGAGCCTGGAAGTCGCTTCACGTAGTTTTACGTCTTCATCGATCGGGGTTGTCCAATTTCGGCGTTGGATATCATCGATCCCCCAGGGGTTTGGGAGGTATTGGAGGTCGATGAAAATACTGATGTGAATTCGGGGAGTAGTAGACTCTGCTCGCCCGAATTAGGGCGG # Right flank : TATCACTGAGAGACACTCCCGTGGAGATACCTTGTCCCAGATGATCCCCATAAGTTTGAAGCACCGTGCAGCGTCGATCGTCGCGCCGTCATCGTCATCAGATCGATGGGAAACGTCGAATCAAGGATCGTCGTCGCCGTCGAACCGGTCAACCAATTCGTCGATCTCTCGCGTGGACGTCTCGTGTACGGGGTACCTGAAGTCGACCATCAAACCTCCTCAGAGCCGAGTCGCCGAGTTCCCGACCCCGGAAGCACCGCCGCCAATACCGGCCCCCGAGATGGATCGATAGAACGCCACCGAGTAGGCCGCGTAAAACGCCCCACCCACTGCGATCGTGACCACGTACACGACGGCGGCCACGACCAGCAGCGGCAGGGAGGTCTCCGGCAGGGGCAATGCGGCGGGCTGGGGCGACAACAACATCGAGGCGCCGGCGCTGAGGCCGCCGATGACGACGCTCCCGGCGATCAGGATCGCCGTGTAGCCGAGAACGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2288733-2288487 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017558.1 Halopenitus persicus strain CBA1233 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =============================================== ================== 2288732 27 100.0 47 ........................... CGTGTCCGAGCAATGGATGACGGATCCGGTGGTTCAATTCCTCGGGA 2288658 27 96.3 47 ...................T....... CGTGTCCGAGCAATGGATGACGGATCCGGTGGTCCAATTCCTCGGGA 2288584 27 96.3 44 ...................T....... CGTGTTCGATCGATGAGTGATGAATTCAGGAGTCGATCTTTCGG 2288513 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =============================================== ================== 4 27 98.2 46 AGAACACGTGACACGGTGGGGTGTGTC # Left flank : GAGCGCGCGGCAGGCGCTCACCCTCCTCTACAAGGCCGGCGAACTCGTGCGCACCGGCGACGCCACGACGGTCACGGAGGAGCACGTCCACGAGGCGTTCACCGTGATCGAACGGGACCAGATCGAACACGGGATGCGCGAACTCACCCGCCACGGCCACCTCGCCCTCGTCGCCGCGCTCGGACTGGCACTTCAGGACGAGACGCCGGTCCGGATACGCGAGATATATCCACTCTATCGAACCATCGCGTCGGAGTCCAAAACCGACCCTCTCGTCCGCCGCCGCTTTCACGATCACCTCGCCGATCTCGCGATGCTTGGCATCCTCGATCGACGCACCCGGAACGAGGGACGAGCGGGCGGCCAGTACTACGAGTACGAGTTCAACGTCGATCTCGGCACGGTCCGTGACGTCGTCGCCGACCTTGAGGGGATCACGGTCCCACGCAACGTCGCCAGACAGCTCTAATCTCGCGTGGCCAGTCGGTGATGATTGGGGA # Right flank : TCCCGGCAGTGACCGGTTTCGGTAACTCTTTCCTCGCGAGTCCGAGGCGTTCCGCGTGGCTGCAAATCGTTGACGAACGAGCAGTTATATAATGACAAACATCCCTCCCGATACAGCGACACCGCGAGTTCCCGCCTGACGATCGGCTCGCGATCCGCCAGCTGTGCGGCGATCGTATCCAGCACGTCGGGCGAGAGATCGATGCTGCACATACCGATCGGTTCGGCGTCGTGCCACTTAGGAACGCCGTGTAGGTCCGTACTCACCGTTCCCATACGGGGAGTGGAGACATCGAAATGGTCGGATCGGCTTTGCGGCGTGCTCCACCGGTGCCTCGATCCAACGCTCGTCACGAAGGGGGCGGCGAGAGAGACACCACCGACGATGCGGTGCCCGTGTCACTCGGTACGAGGTATGTCCCCCCTCACCGCCATCCACCCCGTTTCCACAACCTTTTACCCAGTAGTTACTCAACTCCTGAGTAACCAATGACGATCCTC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAACACGTGACACGGTGGGGTGTGTC # Alternate repeat : AGAACACGTGACACGGTGGTGTGTGTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //