Array 1 336749-335858 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS264128.1 Francisella tularensis subsp. novicida GA99-3549 supercont1.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 336748 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [336739] 336677 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [336650] 336469 37 94.6 36 ........C...A........................ TTGCTGTATTGGTATTAATCTACATTTTTTAGATTT 336396 37 100.0 34 ..................................... CCAACTCTTGAATTAAGTGTTGCTGTTGCGGGTT 336325 37 100.0 34 ..................................... ATGTTTACATCTGCTGGAACGATTCGAGGCAACT 336254 37 100.0 35 ..................................... GAATTTGAGTATCAGTTTCGTAGATTTTAATCATT 336182 37 100.0 36 ..................................... AAAACAAAAAGGTAATGTTTATCGTGTTATTAATCA 336109 37 100.0 34 ..................................... CAGCAGGGTCAGGAGCGAAATTAACTCTATGATT 336038 37 100.0 34 ..................................... CTCCTGCGATAGTGCGAGACGATAACGTAACTGG 335967 37 100.0 36 ..................................... ATCTTTTCTTGATTGTAATAAAGCTCTGTCTATCTT 335894 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 11 37 95.6 48 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : TGATAGTCATGTATATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAAT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 91258-92465 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS264129.1 Francisella tularensis subsp. novicida GA99-3549 supercont1.6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 91258 36 86.1 32 ...A.T..T.A........................G ATATTTGAAGCAGCTGCTTATGTTTTGACAAT T,GG [91268,91272] 91329 36 100.0 28 .................................... TAAGGTGTAACACACTACACTTTGCAAG 91393 36 100.0 30 .................................... ATAACGCAATAAAAAGCCCAACACCCACGC 91459 36 100.0 29 .................................... GTGTTGAAAGTAGCCAGAGAGCAGATAAA 91524 36 100.0 28 .................................... TTAAGGAGTATAAAGATGATAAAGCGAC 91588 36 100.0 32 .................................... ATATTTGAAGCAGCTGCTTATGTTTTGACAAT 91656 36 100.0 30 .................................... CTTCTAAGTAATAATCGTATTTTCATTATA 91722 36 100.0 29 .................................... CCCAAATACTTTCGATTTTCTTAAGCACT 91787 36 100.0 28 .................................... ATTTCTGCTGAAACCTATCTAAAATACA 91851 36 100.0 29 .................................... TTAGAGGGGTATGTGATGGATATAATTGT 91916 36 100.0 28 .................................... CATTAGCAACACCAGTCATCACATAAAT 91980 36 100.0 28 .................................... ATTCTAAATTATTGATATTACTTGAGCC 92044 36 100.0 28 .................................... CATCTCAAAAACTAGGAATTTCTACAGA 92108 36 100.0 28 .................................... GCTGTGCTATTGGTTTAATGATCTCTGC 92172 36 100.0 28 .................................... GGAGATGAAATGAAATACGGCGTAAATT 92236 36 100.0 29 .................................... ATTTCTGACATAACTAAACAACCATTTTA 92301 36 100.0 29 .................................... CTCGTACAGATTGCTGGTGATAGTTATAT 92366 36 100.0 28 .................................... AAAACTCTAGAAGAAGCTAAAGAAAGCC 92430 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 19 36 99.3 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : TAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTATTTATCACCGCAATATATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCAATAAATTCTCAAGTAGTGTTATATTAGCAAATACTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTGGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGTCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //