Array 1 2795-3737 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIBPH010000013.1 Escherichia coli strain U48-1 NODE_13_length_130441_cov_30.999831, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2795	    29	 100.0	    32	.............................	AACATTAAATTGCCGTGCTGGATGAATCGCGG	
      2856	    29	  96.6	    32	............................C	TGGATCAGCTGGTTCAATCGTTTACAGCACTG	
      2917	    29	 100.0	    32	.............................	TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT	
      2978	    29	 100.0	    32	.............................	TCGAAAAACTTCGTCCTGAAAAAATTCATCAT	
      3039	    29	 100.0	    32	.............................	CCGGTGCAACTGATATTGATAAACGTCGACTC	
      3100	    29	 100.0	    32	.............................	ACACCCGACCGCTAACCGATTTCGTTACAGTA	
      3161	    29	 100.0	    32	.............................	TGTATCACCGAAAGAATGGTTTGACGCGCAGG	
      3222	    29	 100.0	    32	.............................	GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT	
      3283	    29	 100.0	    32	.............................	TCGGGCGGCTCTGGTGTTCCTGACATGGCGGC	
      3344	    29	 100.0	    32	.............................	AATTTGCATCACATAGGGGCGAGGCTCAGTGA	
      3405	    29	 100.0	    32	.............................	CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA	
      3466	    29	 100.0	    32	.............................	GAAAAGCTACTTTTGTGTTCAACTGATGCATT	
      3527	    29	 100.0	    31	.............................	CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 	
      3587	    29	 100.0	    32	.............................	AATCTATTGTGAATTTGAAATGGTCCAGCACT	
      3648	    29	 100.0	    32	.............................	GGTAAAAACACGGTCTGAACCGACATTCATGT	
      3709	    29	  96.6	     0	............T................	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.6	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   AAATATTGTAGTTTACAGAGAGCGTCGCAAGTCATTGTTTGTACACAAGTAATTGAGCAAAGCGTGGATATTGACCTGGACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCAGGACGATTACAGCGGCATATCCGCGATATTAATGGTCAGTTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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