Array 1 61851-62428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000002.1 Halorhodospira halochloris strain DSM 1059 scaffold0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61851 29 100.0 32 ............................. CAGCGACAATTAACCGGCATTCCTGGCAAAAT 61912 29 100.0 32 ............................. CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG 61973 29 100.0 32 ............................. GTAAGTACCCCGACGCGGAGCCGTCGCACTAC 62034 29 100.0 32 ............................. CGCGCTAATGCACTGCTGGATTTGCAAACTGA 62095 29 100.0 32 ............................. GAGCTTAGACGATGTGATGCGCGCTAATGCGC 62156 29 100.0 32 ............................. CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT 62217 29 100.0 32 ............................. TCTCGGCTAACGTTTTCCTCATGCCTCGATCG 62278 29 100.0 32 ............................. AGCGGCACGTTTACCATGCCCGAAGATGAAAT 62339 29 100.0 32 ............................. CAATCTTAGCACTGTCAAGATCGACGGACTGG 62400 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CCGCCGCCACCAGCCCCCGAGGCTCAACCCCCGGCTATTCCTGAGCCAAAATCCATCGGTGACCACGGCCACAGGAGCAAGTAACATTGGCTATGCTGGTAGTTGTAACGGAAGCGGTGCCTCCTCGATTGAGGGGGCGTCTGGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTCTATGTCGGTGATGTGAATCGACGTGTGAGAGAAATGATCTGGGAGCAGGTCAACGCCCTGGTGGAAGATGGGAATGTTGTCATGGCGTGGTCGAGTCGCCATGAATCCGGATTCGAGTTCCAGACGTGCGGGAAAAACCGAAGAGTACCAGTCGATTACGAGGGGCTACGTTTGGTGCGCTTTGCTCCAGATCCGGAGGCGGAAGGGTAACATTTTGATTTTTCATGGTTCTTTAAAAATCTGGCATTTTTGTCGAAGGCTGATTTTCTTGGTGCGAACGAGAGTTTTCGTTTTGGCCTTTTAAATCATCTTGTTATAGGAAGT # Right flank : GTTGTGCCGAACCACCCGCCGAAGCGAGGGGCCGTGTTCTGGTCAAATGATTTCGGACACCAATTTTAGCAGCGTACCTCAGCATACTTCCGCCGGGGCCAAGCCCTCCAAGCTGGTATGGCCGCGGCCAGCGTTGTATTCCCATTCAATAAATTGAGCTATGTCTTTGCTGGCATCATGAAATCCCTGGTAACGACAATGATCGGTCCATTCACTTTTGAGACTGCCGAAGAAACGCTCCATAACCGCGTTATCCCAGCAGTTGCCCTTGCGGCTCATAGAGGCAATCATTCCTTCTTGTCGTAACCTATCTTGATAAATGGTGGATGCATATTGACTGCCGCGATCTGAATGATGCACCAGTCCGGGTTCCGGATTACAGCGTTCTATTGCCATTTCAAGAGCATCTAGAGTTAATTCTACACGCATATTATTGGCTATAGCCCAGCCGACAATTTGGCGATTGTAAAGGTCCATAACTGCAGCCAAGTATATCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63727-65525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000002.1 Halorhodospira halochloris strain DSM 1059 scaffold0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63727 29 96.6 32 ............................T CGGACTCGACCTCCTCCATCGAGCCGTAACTC 63788 29 100.0 32 ............................. GTATGAGCGACAGCAATCTTAGCACTGTCAAA 63849 29 100.0 32 ............................. GCACAGACGACTACTGAATCTTACGGTTTCCA 63910 29 100.0 32 ............................. ATAATGCAAGACATGCTAACCGATGCAAATCC 63971 29 96.6 32 .......T..................... ATATCCTTAACGCCCTCCGAGACTACTAACCA 64032 29 100.0 32 ............................. GTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC 64093 29 100.0 32 ............................. TACCCTCATCTTCCGATGAGACTAACATATCC 64154 29 100.0 32 ............................. GACGACGAAACCATTCGCGCTAGCGAAGAATA 64215 29 100.0 32 ............................. AGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT 64276 29 100.0 32 ............................. CGTTCAGCTGCTCGCGGACACGCTCTTCGTCA 64337 29 100.0 32 ............................. CTGCCCATGGAATATGAGCCGGATCGCCATTG 64398 29 96.6 32 ............................A TCCCGCGTCTATACCGACAAGAGTTTGGGCGC 64459 29 100.0 32 ............................. TTTGCCGCGGAACACCCTGAAGCCACGCCAGA 64520 29 100.0 32 ............................. ATAACCGGCGGCGGTGAGCCGTCAGATGAGTG 64581 29 100.0 32 ............................. AGTTTAGACCCGAGCGAGTACGGACAGCAGGC 64642 29 100.0 32 ............................. GTTGAGTTGCAAACCACCGACCTGCCTACAGA 64703 29 100.0 33 ............................. TTCGCCGGTAGAAAGCTGATTTTCAAGCGCGAC 64765 29 100.0 32 ............................. TATCACTGGTTGTACGGCGCACCGCTGCTTGC 64826 29 100.0 32 ............................. ATTACGGCACGGGGCGATCAGGGAAACGGGTC 64887 29 100.0 32 ............................. GCGCAACAGTTCATCACCGTATGACGTGTACG 64948 29 100.0 32 ............................. CCCTGGCGCCCGGACGATGCCCGTGTCTATCA 65009 29 100.0 32 ............................. ATGAACCGATCACCAGCCTTGTCCCACGGCAA 65070 29 100.0 32 ............................. TCCTTGAGTCTTTGTGGAGATACACTAATGGA 65131 29 100.0 32 ............................. GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG 65192 29 100.0 32 ............................. GGCCGATGGCAAGTGCGGATAGAGGATTTGAG 65253 29 100.0 32 ............................. AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA 65314 29 100.0 32 ............................. TCCGGTAGGGGCATAGGACGTAAAGCGAACCC 65375 29 100.0 32 ............................. TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG 65436 29 100.0 32 ............................. TCATCGGTAGTCATTAAATCTGCTACTCGTAT 65497 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GCGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : GCGTCAAATTTGTCTTTCTTTAGCCAATCGTAATAACCGCTCCTCGAAGCTTTTAAAACTCGGCACATCAAGGAAATCGAGTGGTTTGCCTTCTCCGCCTCTATAAACTGATACTTCAGTTCTGCTCGTTGGCGAAGAAGGCTGCCGCCTTTTTTAATATCGCCCTTTCTTCTTGCAGCTTACGGTTTTCTTCCCGCAGCCGACGGTTTTCCTCTTCAAGCTCTGCAGAGGGTTTTCGGGCTTGCCCGTGGTTTGTTGAGTTATTCTGAAACTCTTCAGGATATAACTCCCTCTCCCATCGATAAATCATGCCGCGAGTAAGATCTAAACGACGAGCTACCTCTGTCTTGGTATAGCCCTGTTCGCGATGCATGTTAACTGCCATTGTCTTGTACTGCTGGCTATACTTTTTGGGTGACTTGCTTTTCATCTTTGAACACCTCCTCTCCAAGATTAGCGTATCTCATTGGAGGTGTCCGTTACCATTGGACCACAACACC # Right flank : GATTGATATACAGTAAACCCGCCTGGTTCTCCGGCGTTCCCTGGATTGGCGCGGTGCCAACGGACGGCTCTGCGATGTCAGCTGCCGGGTCGCGATGCTGCGACTGCACGAGCAGGGGAAGATCACCCTACCTCCATCCCGGCTGCGCAAGCGCCGTCGGCGCGCCACGTTTCCCCCGACGCCGGCAACCGACCCCCAGCCGCTTCTCAATACGCCGGTCAACATGATGCCAAAACCGACCTTTCATATCGTCCAGGGCAATGCGGCGCAATCACGGTGCTGGAATGAGTACATAGCCCGCTATCACTACCTAGGCTACACGCCATTAGACGGTCACCAGATCCGCTATAACGTCTACGCTGGAGAACAACTCGTCGCGCTGCTCGGCTTCGGAGCCAGCGCCTGGAAGCTCGCCGACCGTGAGCGGTTTATCGGCTGGAGCAGCGAGCAACGCGAGCGCAATCTATCCCTTGTGGTCAACAATACACGCTTTTTGATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 110654-110261 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000005.1 Halorhodospira halochloris strain DSM 1059 scaffold0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 110653 36 100.0 35 .................................... CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT 110582 36 100.0 38 .................................... GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT 110508 36 100.0 35 .................................... CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC 110437 36 100.0 34 .................................... GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA 110367 36 100.0 35 .................................... TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT 110296 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 36 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : ATGCAAAGCTTCACCGCCGTTGGCAAAAGCGGGCAGCAAATACTATAGCATCCCACTGCTTGCACTTAGGCAAGTCACTCAATCCGGGTAATAGTGAATATGACTGAGTTTGAGTTGCTTGTGCGCCAACAAGCTAGATCCAAAAAGATACCGATGGCGGAGGTTGCAAGGCGTTCTCGATTGAGCCGTCAATCCCTTTACAATATTTGTAACTGCACTAGCCATCCGAAGTTGCAAACATTCGTAGACTTAGCTCACGCCCTAGACATTAGCCCTATGGTCTTGCTCGAAGCTTACTTGCAAAGCGCTGACAAGGAAGAGCAACCATAAAGGTATGGCGATTATAGGTTTTTTGTTATAGCATCACTTACGGATGGGGAAGGATCTTTAAAAATGAGAATAGAGTGCAGATGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGCTATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : TGCGAGCAGGTATTGACCAACCAATATAGGGCTCTTTGCCCTTGACATTTGCCTGTCAACACCACTCAGCCAACTAAGTTATGCACAAGGCTCAATGCTTGCGATTTGGACCAATAATCAGCCTGTGATAAAGCGCAAGACCCACTTTGTATCCTGAATTACAGTCATAAGCCACTGATTTTAATGTCCCCACTGCCTGCCTGAACAAAAACTATCCAAACCCGCCAAATGCCCGTTCTTATTAGGCAGATGGAAAATCTCCACAAAGTTTTCCACAGCTTTTGTGGACAACTTCGGTAGCTCTCCCGCCTTCTGATCCACCTACTCTAAGGCCGCGCCCACCCTTAGGCTCTTCAATTGACATGAGCACTTGAGCATCTCCTTTACCGCTCAGCCTCCGCTCTCCCCTCCCCTCTCGCTTGCCCCGTTCACCCCATCTATCTACCATGTCTGATTACAATCCACCTTCCCGTTAGCAGGCATCAATGGCTCATCAAGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 119273-119024 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000005.1 Halorhodospira halochloris strain DSM 1059 scaffold0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 119272 37 100.0 33 ..................................... GTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAG 119202 37 100.0 34 ..................................... CCCCGTGACATAGAACATTGCAATTGGTTGAGTA 119131 37 100.0 34 ..................................... GATCTGTATCTTGAATGGGCACTCCCACCCGACC 119060 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 99.3 34 AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : AACGATCCACGGGGCAGGGCTATGAAGCAAGCTCGGCAGATCTATGGCGAACTGACGGGCGAATAAGATCAAACAACAAAGAGAGCAGCAATCAAAGAACCAGGAGCTTTAGCAGCGATTTGGACTGCCCTGTTGGAATTAGGCAAGCCTGGTTTATCTCGCGCTATCCGGGGACGGTCGAGTAGGCCCGCAGCCAAAACTTGGAGTTTGACTCAATCCCAAGCAGGTGCATTTCGGTGATGCGGCATGCGCGAGTGTGCACGGATCCGCGAAGGTAGCATGTTCAATGTGACAGGCCCTACTGCTAGCCCTGGGCCCGGAACCGCAAAGCGCTCACTGGCCTTGCTTGGTTATAACCGGTATGATCGTGAAGATAGTCAGGGGGTCTTTAAAAATGAGAATAGAGTGCAGATGCCAGCTTATGTTAAGTATTCGGGCACCTCAATTTCTGTCAAACCCCCTTGTAGATATCTGTTTTGAAAGGGGTTATAGAGCCGAGG # Right flank : AGCGACAGGTGGTGCTAATAACATTTTTGTCCGGACTGAATCCGGCTCGCCGTAAGCACTTAATATTGACAGATTAAATACATCTGCAAGCTGCCGATACCTTAAAATCTCAGAATTTTTTTTCAAGCAAAAATGCTTAAATCTAAGCATCATATAAAATAAATAAACGATGATTCCCTTATTGCCATTGCGTTTGCATTACCGTGCTGAGCAACAGGTTAAGTTGCCATTTTTTCCGGGTTCTATCTGGCGTAGCGCCTTAGGTTACCGACTGCGCCGTGCTAGCTGTGTGACAGGAGCGGAGCGTTGTGATGGATGTTTAGCCGCCACCCATTGTGCTTATGGCCAGCTGTTTGAAACACCAACGCAGGCCGTTACTGCGAGGACCCACCCCTACAGCGAAGAAGTTAGTGCGGAAAAATTACTTAAAAACTACCCTAAAGCTCCCCACCCTTTTGTTCTCTCACCGGTAAGCCCAGGGGGTGAATATTCTGCCGGGA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 129721-129190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000005.1 Halorhodospira halochloris strain DSM 1059 scaffold0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 129720 36 100.0 35 .................................... CCTATAGTTCGTTGAAATATATCAATCGCTTCCCT 129649 36 100.0 36 .................................... CTGGACCTTGACAGGATTTTGGTTGCCTACACTATC 129577 36 100.0 36 .................................... GGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC 129505 36 100.0 35 .................................... GCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG 129434 36 100.0 33 .................................... CCCACCAGTGCGTAAGAGTTGTCATACGCGGAT 129365 36 100.0 33 .................................... AATTTTATGTTGAACCATTCCGTGTCCTGGTCC 129296 36 100.0 36 .................................... AATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC 129224 35 94.4 0 ................................-..G | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 99.3 35 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : ATTCGGTGGTGATAAGCCACCCAGGCTGGCCCCGTCAAGCGCCTTATTTCAGCATCAGCCAAGAAGCAACCAAGGGCAAGCGACATGATATGACGCTCCCGTATGCTCCTTTGGTTGGGTTAGCTTGGGGAATTATTTACAAATACTTTCATGATATATACGCTTATTCTTGTGCCCTCCCCCCGGGCCATGCTAGCGACCAGTGCCGGAGTAATCCAGCAATGGTTATGGGTATGTCGGGATGGCACGCGCGAAATTGCACGTGCCCGGCGGTAGCGTGGTCAGTGTTGAAGGTTATATGACCTACTGTCCACAGAACGGACCCTTAAAGCGCTCTAGCCTGACTTGGTTACAGACGGTATGATCCAGTATAGGTGTTGGAGTTCTTTAAAAATGAGAATGGAGTGCAACTGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGCTATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : TATAACTGGCTGCACAAAATCGCTAATTCTGCAGAGCCGGAATATTGCTGTACTGGGATGTTATGCGGCGGGGTTACTTTAAAGCTCAGAACAAATAAACACGCAGATTGGGACTTAATTAAGTATCTACAAGAAGTTCAATCGAGTGATTTTTTGGATGAGTCACTTTTTCTCTACGTGAAAGCGCTCGATCCTGGCACCAGCTAATTCCATGTCATCTTCACTAAGTTCCTTACCGCGCATATCTAGAGGCAGCTCCAGCGACAAATGCCAATAGGCAGCACCGCGCTGGCAGATCATCGCAGCGATATGGACCGGTAGTGTCCCTATAACAGCATCTCCTCGCTCGACCGCTGCCCAATCCAAGTGCTCAACAAACCTGTCCACTTCTATTCCTTGACGCTCGGCCCAAGCCGCTGCTCCAGGATGACGGGAAACAAACCAAGTAGTCATAAAACCTCCGATTTCTCAATCCCTATAGAGAGTAGTTGTGCGCTACA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 141079-140900 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRM01000005.1 Halorhodospira halochloris strain DSM 1059 scaffold0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 141078 36 100.0 35 .................................... CCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACT 141007 36 100.0 36 .................................... TTTTTGACACCGGCTAATCGTCTACGCGATAGCCCT 140935 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 36 GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : GACCTTGGGTTCTCACAGTTCTACTTCATAGAGACATCCAGCGAAAAAACCATCGGCCAAGAAGTGACCAAGGCTAAGCGACACGAGGGGACGCTCCTGTAAGATTTTCTAGGTATGAAGAGTTTGGTGAAGGATTTACAAATTCCTTTACAACATATACGTTTACCTTGTGAGCCCTCCCCCCGGGCCATGCTAACGACCAATGCCGGAGTGATTCGGCAGTGGTTATGGCTATTTCGGGATGGCACGCGCGAAATTGCACGGGCCCGGCGGTAGCGTGGTCAGTGTTGAAGGTTATATGACCTACTGTCCACAGAACGGACCCTTAAAGCGCTCTAGCCTAACTTGGTTACAGACGGTATGATCCAGTATAGGTGTTGGAGTTCTTTAAAAATGAGAATGGAGTGCAGATGCCAGCGTATGTTAAGTATTCGGGCACCTCGATTTCTGTCAAACCCCCTTGTAGATATCTGTTTTGAAAGGGCTTATAGAGCCGAGGA # Right flank : TGCGAGCAGGTATTGACCAACCAATATAGGGCTCTTTGCCCTTGACATTTGCCTGTCAACACCACTCAGCCAACTAAGTTATGCACAAGGCTCAATGCTTGCGATTTGGACCAATAATTAGCCTGTGATAAAGCGCAAGACCCACTTTGTACCCTGAATTACAGTCATAAGTCACTGATTTTAATGCCCCCACTGCCTGCCTGAACAAAAACTATCCAAACCCGCCAAATGCCCGTTGTGATTAGCCAGATAGAAACTCTCCACAAAGTTTTCCACAGCTTTTGTGGACAACTTCAGTAGCTCTCCCGCCTTCTGATCCACCCTGCTCGGGGTACTGCAACAGTTGTGTCACCAGGGGCCATGCCGCTACGCGCCAGAATTCCTTGCCGTGCTCAAGCTGCGGGCCGCGCCCGCAGCCAAGGATGTGCTCGATGCCATTGAGGTGCTGCGCGGCATGAACAGCAACAACGCCCGCAAGGTGCCCGCTGACGCGCCAACCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //