Array 1 2755-6682 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKUQ01000012.1 Klebsiella pneumoniae strain EuSCAPE_IT139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2755 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 2814 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 2875 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 2936 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 2997 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 3058 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 3119 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 3180 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 3241 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 3302 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 3363 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 3424 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 3485 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 3546 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 3607 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 3668 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 3729 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 3790 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 3851 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 3912 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 3973 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 4034 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 4095 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 4156 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 4217 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 4278 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 4339 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 4400 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 4461 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 4522 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 4583 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 4644 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 4705 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 4766 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 4827 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 4888 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 4949 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 5010 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 5071 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 5132 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 5193 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 5254 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 5315 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 5376 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 5437 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 5498 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 5559 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 5620 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 5681 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 5742 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 5803 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 5864 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 5925 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 5986 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 6047 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 6108 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 6169 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 6230 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 6291 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 6352 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 6413 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 6474 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 6535 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 6596 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 6654 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //