Array 1 150042-151992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWND020000011.1 Escherichia sp. 93.0750 MOD1-EC7255_11_length_152018_cov_42.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150042 28 100.0 32 ............................ ATTTGTCTGCGCGGGTCATGCGGGGTTTACCC 150102 28 100.0 32 ............................ GCAAATCTGGCAATCGAGGCCGCGTTTATTCG 150162 28 100.0 32 ............................ TTCAGTAACAGTAATATGCGATTCTTTATGCG 150222 28 100.0 32 ............................ TCGAGGCGACAGAAACATTCTACACGTTAGAA 150282 28 100.0 32 ............................ GATTGCATCGCGGCGTATACGGCTTTCTCAAT 150342 28 100.0 33 ............................ GCTTTGTCAGAAGCGGGTGTGTTATTTCCAAAG 150403 28 100.0 32 ............................ ATTGAGCGTGCAACCGAGCGCCAGATTAACGT 150463 28 100.0 32 ............................ AGAACGGGAAGGCGTGCAACTTAGGAGAGTTC 150523 28 100.0 32 ............................ TTGTCTGACGGTCACTGTTCGGCACGGTGTTG 150583 28 100.0 32 ............................ GTAACAATCAACGTGGAGTATAAATAATGTTA 150643 28 100.0 32 ............................ TTGAGGCTACAGAAACGTTCTACACGTTAGAA 150703 28 96.4 32 .......................T.... GCAACGTGGACAAATACGGCAATCCTCATATA 150763 28 100.0 32 ............................ ATAAGGCCCGAACCGTCGAACAAAGACCATAT 150823 28 100.0 32 ............................ GGAATGGTCGAACGTAACGGAGGCAGATTTAG 150883 28 100.0 32 ............................ GCTAAAGTTGCCGAGTGTTTGGGCAATGTTTA 150943 28 100.0 32 ............................ TATGGCTGATAAGCTATGGAACCCCGACTATT 151003 28 100.0 32 ............................ AGGTGGAAGCAGATAACCGCGTATCGTGAATA 151063 28 100.0 32 ............................ ACGCCGAAGTGTTGGGCATCAAGGATTCTCCA 151123 28 100.0 33 ............................ AGCGGCATCGACTGCGCAACGGGGTTCCTGTCC 151184 28 100.0 32 ............................ GCTAAGGTAGAAGAGAAAGAACCTGAAGTTGA 151244 28 100.0 32 ............................ GTTTTGATGTATCGAAACTTACCGCTTCTACT 151304 28 100.0 32 ............................ CAACATCAGCTCCCCGGCGTCGAGCATCTTTT 151364 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 151424 28 100.0 32 ............................ AAATCTGATGGGCGGCAGAAGTAGTTTTACCT 151484 28 100.0 32 ............................ GTACAGCCGGTCGCAGTATCACGACGGGCAGG 151544 28 100.0 32 ............................ TCCCAGTTCTGCAGATATGCATCCGATACCGC 151604 28 100.0 33 ............................ GGAGAACGGCGGGAACGCGGTAGCACCAATGAT 151665 28 100.0 32 ............................ CAGCACGGTGCGTCCATCAAATTGACCGGTGG 151725 28 100.0 32 ............................ TCTTATTGCCTCTTATCGCCTGGACTGGTTCC 151785 28 100.0 32 ............................ TGGAAAGGGGCGAGCTTACTGTCAACGACGAT 151845 28 100.0 32 ............................ TGCGCACGTTCATCACATGCGGTGCAAATAAT 151905 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 151965 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : AGACACTCTCTGGTGGTGAGAAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8969-10075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWND020000030.1 Escherichia sp. 93.0750 MOD1-EC7255_30_length_42699_cov_41.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8969 28 100.0 32 ............................ GTTATGGTGCCGGTGGTTTGCTGCATATAAGC 9029 28 100.0 32 ............................ GTACCCTGGTGAGAAAGACGAGCGCCCGTCTT 9089 28 100.0 32 ............................ TGTTCATCCGGGAAGCCCCGCGTCTGATACCA 9149 28 100.0 32 ............................ GGACTTCATCGCAAAACACGCGGTAACGCAGC 9209 28 100.0 32 ............................ CGTCTTTATCACCCGATCTCCGGTATCGAAAT 9269 28 100.0 32 ............................ AGGAGGAGGAGCGTAATCGCCTGACGCTGGAA 9329 28 100.0 32 ............................ GCGCCTCCGCGACGCAATTAACATGGCAAAAT 9389 28 100.0 32 ............................ GCTCACAATCCCGCGCTCATACCCCCACTTGT 9449 28 100.0 32 ............................ GGCATGTAAACATCAGAGAGTTGTCTTAATTT 9509 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 9569 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 9629 28 100.0 32 ............................ GGTACAGCTCCAGCATTAATCCCCACCAGCTC 9689 28 100.0 32 ............................ AGTTTGCTCTGAGCATATTCAAAGCGGTAATT 9749 28 100.0 32 ............................ TGAGCATCGGAGCAAAAGGACGAGTTATGGAT 9809 28 100.0 32 ............................ AAAGTGTCCCTTTATAGCCTTTAGCCCGTGCC 9869 28 100.0 32 ............................ ATCCACCGGGCCTGATGACACGCTTTGCACGC 9929 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 9989 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 10049 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 227-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWND020000048.1 Escherichia sp. 93.0750 MOD1-EC7255_48_length_16800_cov_34.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================= ================== 226 24 100.0 33 ........................ CCAGTGAAGGAAGCTGTTCGAGTAATAGGGTAC 169 24 100.0 33 ........................ ACCGTGAATGAAGCTGACCGAGTAACGGTGCAT 112 24 100.0 33 ........................ ACCGTGAAAGAAGCTGACCGAGTAACGGTGCAA 55 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================= ================== 4 24 100.0 33 TGATTTAACCCCCTTAATCGCCAG # Left flank : AGCATCAGGCAATTCTGAAAGGTCCCTGCCGCATTAGCGGTCGCCTAAAAATTTGTTGGTCTATGACGGCTTGATTATGAGTCAAATTTCATATTTTTGAATAAATGATCACCAAACAACCATAAAGAAAATTTTCGCGGCCTAACCTGAGTTTCGATTTGAAAGTTATCCCTAAGGCGGTGTTTCAACCTAAAAGCAGCAGTCACCTCGTTATGTCCTTCCTTTATATCTTAAGCTGTGATTCAGCGTTGTAACTTAAATCTCTTTACTAAATGGACTTATGATGTTGGTTGCTTAAGAGATTTTTCAAGCTTAAATTCTGAGATAACATTTTGGTCGAAATACCAAGCTGAAAAAAGTTCTCTTCTCAGTTCTTATGACCAAATTCAAATTTACTCAGTAAAAATTTTACGCTATGGATAGACCCTCCTGTGGATCTCAGGGAATTTATCCCCTTAATCGAAACCCCGTGAATGAAGCTAGTTCGAATAACGGGGTAC # Right flank : GCCAGTGGAGGAAGCTGTCCGAGTAACGTGGT # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATTTAACCCCCTTAATCGCCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //