Array 1 5476-6670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVO010000031.1 Holdemanella biformis strain D31t1_170403_F4 NODE_31_length_25470_cov_41.9676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 5476 31 100.0 35 ............................... ATCTAACTTTTCGTAATAACATTTACTTTCCATAT 5542 31 100.0 41 ............................... TAAGTTCCCGCTTCCAATTCGATTTCATTTGACCAGTTTTT 5614 31 100.0 38 ............................... TCACAATAAATTTTATATTTAGCAACTGTACTTCCATC 5683 31 100.0 36 ............................... TCATATATATTAGAAGTTACTCTATTCTTTGCTATA 5750 31 100.0 35 ............................... TGTGCACGTACCTCTAAATTAAATTCCATAATTTT 5816 31 100.0 33 ............................... GATATGACAATAAAAACTCTGCCAGTGTATCTT 5880 31 100.0 36 ............................... TAAACTTTCTTTCATAGATCTTGAACATTTCAAGCT 5947 31 100.0 37 ............................... TTTCAAACGAAACCCTGATGCATTTGAATAACTATTT 6015 31 100.0 36 ............................... CTTTTGTAATGTTTTCAAATCCTATCATTTTTCTTG 6082 31 100.0 35 ............................... TTTCCACGATCTTGCAGGCCTTGTTGATTTTCTCT 6148 31 100.0 38 ............................... TTGTAGGCATAAAATAGTCCTTTCTAATTACGTTTTTA 6217 31 100.0 38 ............................... CCATTGTTATATATATAACTTTCTTGCAATTTGTTTCT 6286 31 100.0 35 ............................... TTGTGCTTTGGATAATTTCTTCGTTTGTCATTTCT 6352 31 100.0 43 ............................... TCTGTAGTCACACTTGAGTGTCCTCCTAATGGTTCTCCGTCCT 6426 31 100.0 45 ............................... TGTTCAACTACCTCAACCCTATTAATTTTCTGAGGGTAGCCACTT 6502 31 100.0 40 ............................... ATCAGTTCTTTTGCTTTTAATACTTTTTTAGAGTAGTCTG 6573 31 96.8 36 T.............................. TTGTTTAATATGTCTATATAACACTTGTAAATTTTT 6640 31 80.6 0 G.........................TGAAT | ========== ====== ====== ====== =============================== ============================================= ================== 18 31 98.7 38 ATTGAATATTGTTCTTATAAAGGATTAACGC # Left flank : CTAATACACTTGATTTTTTTGTGATGAAGTGGTGAGATTATGTACGTTATATGTGTGTATGATGTTAACGAAAAGACATGTGCTAAAGTAATGAAAATATTAAGAAGATACTTGTTTCATATACAAAAATCTGTTTTTGAAGGAACTTTAACACCCAAACAATTTAGTACTTTAAAGGAAGAACTGCATAAAGTTACAAGTGATGAGGATTCAGTATTGTTTTATTTTTCATATAATGAGAAAAAGATATATAAAGAATGAGAAAAAGATATATAAAGAAGGATTAGTTAAAGTGAATGAATCTCTAAATATTTTAATTGATTGATCATTCGACCAACGACATATTTTCTAACAAAATAAGGCCGATTTATCATTGAAAAATAGGAGGTGGTCGAAATAAATTTGTTTAATTTCATTAAAACTACTGAATTTTAGAGTGTTGATAGCCATTTTTGTAGTAAAATACTACGTATATGGCAAAGATTGGTCAAAAATTTGCT # Right flank : TTATAGTTGTTTAAACAAAAAAAAGAAGTATTGCTACTTCTTAGGTGTTATATTAACAACCACATACTCACATATATCCTCTGTTCTTATAGGAAAATCCCAACCAACAAGGCTTGAACTAATGATTTTTGTGCAGTGATTGAATGTTATTTTTCCGTAATTACCGCAAAGTCAGGTTGTAAATGGTAAGAATAAGAGAGTGGAAATATTTGTCCGTTATGAGTGTGACCGCTGAGTTGAAGGTCAACGTTGTTTTTGATATTTTCCCTTGTTCCTTGTGGTTGATGGTCGAGGATGATGTTGTAGGTTTTAGTGGATAGATTGTAGTCTTTTGTTTTCTTGCGGTTTTTGTTTGTGTAATCTTTTCTGCTGATTAGAGTTATGTTATTAAAATGTACTTCTTGATCATTTAGAATGGTGACATTGTTTTTTGTGATTTCTTGATTGAGCTTATTTTTTGTGAATTTTATCTTATTTTCGTGATTGCCATAAACAGGGGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //