Array 1 114300-114694 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUFG01000002.1 Faecalibacterium sp. AF28-13AC AF28-13AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114300 29 100.0 32 ............................. TGCGCTCAGGCAACCGCTGAGAGCATCCACAC 114361 29 93.1 32 ..............T.............T AATTATTCACAAGCGAGGTGGAAAATTTGCAG 114422 29 93.1 32 T...........................T GAACTGCTTACTACCCTCGTGAAGCTGGTCGT 114483 29 100.0 32 ............................. AAGCAAACTGCACTGGCACAGGCTGAAACGGA 114544 29 100.0 32 ............................. AGGTAGTGGTACAGGGTGGACTTGCTCTCAAA 114605 29 89.7 32 ........T.....T.............T AGTAGTCGTACACATCAACAATGGTGTTAATG 114666 29 79.3 0 .....................C.T.CGAA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 CTTTTCCCCGCATACGCGGGGGTGATCCC # Left flank : TGGAGCCGGGCAGTTGCTGGCAGTTCCGGCTGACTGCAAACCCCACCAAAAGCTGCAAAGACACCAAAAACCCCGCAGCGCGGGGAACCGTGGCCGCACATTGCACGACACAGTACCAGAAGCAGTGGCTGTTGGAGCGCGCTGCAAAGCACGGCTTTGCTCTGCGGGACGATGGATTTACCGTGACCAGGGTGCAGTGGCAGCATTTTGCCAAGCACGGCACCCGGCCGGTGACCCTGCTGGCAGTGACCTATGAGGGCATTTTACAGGTGACCGATGCAGAACAGTTTCGGGCACTGCTGTGTCAGGGCATGGGGCGCGGCAAGGCCTATGGCCTTGGGCTGATGACCATTATGCGCGGAGGAAACTGAGATGGACGAGATGCCGGGCATGATTCGGCCGGACCTGCAGGCGCTGCCGCAGGTGAAAGACCGGATGACGTTTCTGTATCTGGAACACTGCACCCTTGGCCGACAGGACGGCGCGATCACCGTTACAGA # Right flank : AAAAAGAGCCACAGGCTAAACTGAAAATGAAATGATGTTTCTGGAAAGGAGAACTCTGTAATTTTGGAACCCGCTCAGGCTGCTATTATCGCAATTTTCAAAAATAGTGCCAATCAAAACGGCATCTTTGCGATATGCAGTTTGCGGATGTTGCTTGTGCATTAAAAACGCAAACTGCTATAAAAGCCCGAAAGTATAAGTGTTTATAGCAAATTATCGTTAAAAATCAAGCATAAAAAAGGTTCACCGTCAGTTTTGGCGGTGAGCCTTATTTGTTTGCTCATGTATGAGATGAATTGCGTTTAACACAGGGCTGCTTTCCAGAAGCATCACAGATACACCTCCACAGTCAGGTCGGTCCACGCTGCACGGCGGAACTGGTGGGGCATCTTGTTGGCTTCCCGGTAACGCTTGGCGGTTTCAAAGTCGATGGTGAAGGTGAGGATGGGCTTTTCCGATACAGCCATCAGATCGGTGCGCTCCTCTTTGGACTTCTTGCA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75816-80781 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUFG01000009.1 Faecalibacterium sp. AF28-13AC AF28-13AC.Scaf9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 75816 33 100.0 33 ................................. ATCATGGAGAAGAACATTTCTACCGCCGCAGAG 75882 33 100.0 33 ................................. TCGGTACGGATGCTGCTGACTACATCCTGACCG 75948 33 100.0 33 ................................. GACGACAAGGAGTATACCGAGATCGACCTGTCC 76014 33 100.0 35 ................................. GCCGTATGTACACCAACTTGACGATGGGTTCCAAA 76082 33 100.0 34 ................................. AAGAACAAAGAAGAGCTTCGGGCGGGCTGTCCTG 76149 33 100.0 37 ................................. ACTCCCGGCAAGATCAAGGCGGGCGAGGGCATGGAAG 76219 33 100.0 35 ................................. ATCGTTGAATTTCGCCCATGTTGCATATTGGTGCA 76287 33 100.0 37 ................................. AACTCGTCCGCGAGTTCCCGGTCTTTCCGTGGAAAAC 76357 33 100.0 34 ................................. GAACCTGTAAAATTTGTGGAATCAAATTTGATGG 76424 33 100.0 36 ................................. GCCGACTGTGGGTTCGTGCACAACGTCCTCCGCGTC 76493 33 100.0 33 ................................. CCGCTTATCAGGTAGCGAACCCCAACGTGGGCG 76559 33 100.0 34 ................................. ATGGCTTTATATTACAACCATGATGATGAAAAAT 76626 33 100.0 34 ................................. CTGACAAGGTAGCTCAAAAGCTGATGGGTCACGC 76693 33 100.0 35 ................................. GTCGTATTTATCGTTATCATACATATGCTCATATA 76761 33 100.0 37 ................................. GTCAAGATCTTCGGTGTCTACGCCCAGCTTGTCGGCG 76831 33 100.0 33 ................................. TTCGGGCGACGTCCCGCAAAATATCATCTTCGA 76897 33 100.0 35 ................................. AGCCAGTTGCGATAGAGCCGCTGTTCCCGCTGTGG 76965 33 100.0 34 ................................. CCTCCACATAGCAGAGCGTGATACACCGACTGCG 77032 33 100.0 35 ................................. CGCAGATGCCGAAGCGCTGAGCGTTGAATCGCTCC 77100 33 100.0 37 ................................. AGCCCGAAGAACCGCTTCTTGCCCCGCTCACGGTGCT 77170 33 100.0 39 ................................. GGTCGGCATGTGCAAGGGCATCGAGAACTATTCGGCGGT 77242 33 100.0 33 ................................. ATCTGTGCAGCGTCTTCAACACTCACGTCGTCG 77308 33 100.0 33 ................................. CGTTTTCCTTCCGGGTTTCATAGAGCCGGACAT 77374 33 100.0 33 ................................. AGTCGATGAGCTTGCAGCACGTTTGGGGAAAAA 77440 33 100.0 35 ................................. AGGTCGTTCAGGATCTCGTCATAGCTGCGGGGCTG 77508 33 100.0 35 ................................. AGCAGGCCATATCCAACTTGATGAAAGCAATCGAA 77576 33 100.0 36 ................................. GACAAAGCACCAACCAGACTGGAAGTCTTCGGTGCG 77645 33 100.0 34 ................................. TCAACGGAATACCCGGTGAGGTCATAGACCTTCT 77712 33 100.0 34 ................................. TCCATCTCGGCAATGTCCTCGGCGGTATTAGACT 77779 33 97.0 34 ...................T............. TGGGAACAGGAGCTTTCCGGCATAAGCGAACGAG 77846 33 100.0 34 ................................. TTTCGATGCCTCGGTCTCGTCGTCCATGTGGTCG 77913 33 100.0 34 ................................. ATGGTGAGGACGATGCAGCCATTCTGCTCAGCCT 77980 33 100.0 35 ................................. GACAGTATCATCGGCGATCTGGCCGAATCCGTCAC 78048 33 100.0 34 ................................. AGCCTGTGCCTGACGGATGCCTTCATCGGCTCCT 78115 33 100.0 34 ................................. AGCCTGTGCCTGACGGATGCCTTCATCGGCTCCT 78182 33 100.0 35 ................................. CTGTATGCGGCGTTTGAAATACCATGAGCGGTACG 78250 33 100.0 35 ................................. CTCAGCGTAATACAGAGTCGAAACTCCGAGCGAGC 78318 33 100.0 36 ................................. GGAAAGCAGATAGTCCGTCACATTTCCGTCCGGAAG 78387 33 100.0 36 ................................. TTCTATATCACTCAGATTACCAACGCGGATTGGACC 78456 33 100.0 35 ................................. ACCTCCTTTCAGTGGTTCTTGAGCATTCCGAAGAA 78524 33 100.0 35 ................................. CGTCGATTACCGACCGAATCGCCGCAGCGGGCAAC 78592 33 100.0 34 ................................. AGGAATCTGCCGCCGCCCTCGGTGTGCTGGCCAA 78659 33 100.0 34 ................................. GCCAGACCGACCCAGCCGTCCGTTTTGTATGCTT 78726 33 100.0 33 ................................. TCCCACCACGCCACGAGGGAAGCGACGACGTTG 78792 33 100.0 34 ................................. CAATCTTTTGAGCCGATCGGAATAACGACCGATG 78859 33 100.0 35 ................................. TTCTTTCACGGCGCGGGGGTTCGGCATCCCACCCG 78927 33 100.0 35 ................................. GACGTCCGGCGTCCGCAGGCCGACAGGCTGAAGAG 78995 33 100.0 35 ................................. GACCGAGGACGTCGCCGATGTCGGCCACCAACCCA 79063 33 100.0 35 ................................. ACCATCATGCGGGACGACAGCGCGAAGAACCGTTG 79131 33 100.0 35 ................................. GTATCGAGGTCGAGGATAAACTGCGAGAAGCTGCC 79199 33 100.0 33 ................................. TACTGCACCGACATGAACAATCTGAACGGTATA 79265 33 100.0 35 ................................. ATCTTGAGCAACTTGACGACCAGAGCGTGCTTGTC 79333 33 100.0 33 ................................. ACCCATGAAAGCGCATTACGATGGGCTGACGTG 79399 33 100.0 33 ................................. TAGTTGCCTGTGAGGAATCGCAGGAAGTCTGTA 79465 33 100.0 36 ................................. TTCTATATCACGCAGATCACCAACGCGGACTGGACA 79534 33 100.0 35 ................................. ATTAGTACATTTAACATCAAATTCAACAGACACAT 79602 33 100.0 35 ................................. CATTACACGGATGTGGCTGCATCCCAGAGTGACAG 79670 33 100.0 34 ................................. CCTGCGCTGGACCACGCTGCCTGACTATCAAGCA 79737 33 100.0 34 ................................. ATCCAAGAGTTTGGGAGGTCGTACCTGTGATGCC 79804 33 97.0 34 ............A.................... TCAGCTCCTCGCACACAAGCTCCTGCGTAAAGCC 79871 33 100.0 35 ................................. ATCACCCATACCTTGTGTTTTCCGTAGCCAGACCA 79939 33 97.0 35 ............A.................... AGATCAACCGCAAGCAGAGCGACTTCATCAAGTCC 80007 33 100.0 35 ................................. AGAACACCGTCCTTTTGGATGCTTGCCGCAGCCTC 80075 33 100.0 35 ................................. ATGGGCAGACGGCAACTGCGGCGAGTTGCGCACCG 80143 33 100.0 34 ................................. AGCTTCCACTCCAGCGCCGCCTTGCCGGTAAAGC 80210 33 100.0 34 ................................. AGCTTCCACTCCAGCGCCGCCTTGCCGGTAAAGC 80277 33 97.0 34 ............A.................... CCGCATTGCCATGACGTGACCGCAGAGCATCCCA 80344 33 97.0 34 ............A.................... TTGACCGCCCGGAAAACGTGGCGTAGCCTATGCT 80411 33 100.0 35 ................................. AGTCTCCCAGCTTCTTGTCGTTGTCCTCCCCCGCC 80479 33 93.9 35 ........T...A.................... TGCCGGGTGCGTCTCTGCCCGATGTGTCAATGGAG 80547 33 97.0 36 ............A.................... GACTACGGCGGCACCCCCGGCTTCTGGCGGCTGAAC 80616 33 100.0 34 ................................. GCGTTCCAGTGCGGAAATACGGTCGTCCAGCTTG 80683 33 100.0 34 ................................. ATCGTGGCCATCGACCAGTTTGATTTTCTAGAAT 80750 32 78.8 0 ....T.............A..A.AC..-C.... | ========== ====== ====== ====== ================================= ======================================= ================== 74 33 99.4 35 GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Left flank : CCATTCTTCTGGAAGTGAGGTTCGTCTATGCTGGTCCTGATCACTTACGATGTCAACACCGAGACCGCTGCTGGGCGCAAACGCCTGCGCAAAGTCGCCAAAAAGTGCGTGGACCACGGGCAGCGGGTGCAGAATTCTGTCTTCGAGTGCCTGCTGGACGCCGCGCAGTTTGCTGTTCTGAAGTCCGAGCTTGCCGCCCTCATCGACCCCGATCTGGACAGTCTGCGGTTTTATCAACTGGGCAACAACTATAAGACCAAGGTCGAGCATATCGGGGTGCATCCCCTGTTTGAATCCGGAGACGTGCTGATCTTCTAGCCCTCTCCCTCGGTGCGAATGGAAAGCACTCACCCTTTTTCCGTCTCCTTCGCACCATGTTTTCAAGCCGTTCTGTGCAGATCGCAGCTGTTTTTTCGGATGTTTTTGGACAAGCTCTTCCAAATCTGTGCAGATCGTTTTATAATGAAACAAAAGCGGAGATGTTTTTCTCCGTTTTTGCT # Right flank : TCCTCTCTCCATCCGGCTGCACTCACTATCCTTTTTGCAGGCCGGTCATCGGTTCGGCGGGCAACAGCCTTTTTCCATGCAAACCAGCGGCGGGACCGCGTTCTGCGAGCCCGCCGCTGGTCTTTTTTCGTGTCGGCTCTCTTTTACAGGCACCCACCGTGCAGACGGCGGAAGATGCCGCCCGCCGGGGTGAGCACATTGGCCATCTCATTTTCCTGCACGACAGCGGACAGATACCCGCTGTGGCAGTGATAACGCAGCAGGCCGACCCGGCTGAGCTATGCTGCAAAGTGCATCTTTTAAGATGACAATTTCCTTGTCATCTCGGCTTCGCTCGAATCTTATAGCTAAAGCATTTTCTACTCCACCAGCGGAGCTGGTGGTTGTCGCTCGCTCAAGCTACCCAAAACAAAAGCAAAAGGCGGCGTGACCCGTTGTATGGGCCATGCCGCCTTTTGCTTGTTCTATTATAAAAATCTGAAGTCCAATTGTCAATGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17860-17579 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUFG01000018.1 Faecalibacterium sp. AF28-13AC AF28-13AC.Scaf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================= ================== 17859 23 100.0 43 ....................... TAAGTCGATCTGGGCCAGCTCCCAGCGGTCGTAGCAGAAAATC 17793 23 100.0 45 ....................... TAAGTCGACCGGCACATGAAACACTTCACCCGACACAAACTGATC 17725 23 100.0 45 ....................... ATTGTCCCACCGGAAATCAGGTTAAAGTTCGACCAATCACCGATT 17657 23 100.0 33 ....................... TAATACACTTCAACACAGTAACAGCTATAGGTT 17601 23 82.6 0 .................AC..AC | ========== ====== ====== ====== ======================= ============================================= ================== 5 23 96.5 42 ACACCCCGCAAGGGGACGTAGGA # Left flank : TCCCCGCGGTCCCGGCCGCCGTCCTCGGAGGAGCCTGTCGCGGCTTTGCGTGCAGTGCTCTGGGTGGGTACGGGGCCGTACTTCCCGTTTGCCGTGTTCTCGCGCAGGGACTGCACAAAGGCATCGTGCCGCTGCGCCTCCGTCATTCTCGGCTGCTGCACCGTCGGTGTGTTGTTCTGGGTGTTTTTGCCGTTCTCTCTGTTTTTGCCCCAAAGGGAACTGAAGAATCCCATTGTGTGCTCCTTTCGCATTCGTCTGTTTTTGTCCGGTCACATAAGATAAGCCCGCCGGAGCAGCCGCAGTTGGAATTTTCGGTGCGAAATCTCAAAATTTCATGGTTTTTACGCGCACTTCCTGCGCGGTTCGCACCACAAAAAGCGGCATTCTTTTCTCCATTCCGCTTTTCTTTTTGCGCAGAGTGTGTTATAATGGTGCCAGCATTATGAAAAAGGTGCATTCTGCCGGTTTTCGGCCGGTCACTTTTGTTCATTTTTGCCATC # Right flank : GACCGCCCCGCTTTACTGCACAGTTTTGTGCGGCGAAGCGGGGCGGCTGCTTTTTTGTGAAATTTTGGGCTGTGCCCGATTTTTTCCGCAATTTTTCCAACTGCGGGAGTTTCTGCGGGCTTTTTTATAAAATATGGGCTGTTTTCCACTAGAAGTTTCACCAAAAAAGCGGTCGAAATTTCTCTGTTTCCGGCGTTTTTCTTTGTCGGATCCCGTGCTATAATGGGAACAAATCTTTTCAAACCTGTTTTTCGCATATTCCCTTGCTATTTTGCCCGAAGGAGATGATTCCTTGAACGCACTCACCTTGCAGGCCACCTTCTGCGGCCTGCTGCACGGCCTTGGCAAGCTGGCCTTCCGGGCCGACAAGACCGCAGCCGACCTGTTGGCCGCCCTGCCGGACACCCCGGAGTGGGCTGCCGTGCGCGGCGGCGCGGCCGCAGGGTCGGACGCCGCCCGCTGCGCGGCCTTTGCCCGCAGCCTGTCTGTGACCGCCGACA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACACCCCGCAAGGGGACGTAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //