Array 1 133922-134559 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNV02000002.1 Klebsiella pneumoniae strain AS006665 AS006665-illumina-1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133922 28 100.0 33 ............................ CAAAAGGCGCCTTGAACATTAGCAGTTCAGCCG 133983 28 100.0 33 ............................ CGGTACTGGTGGAGGTATCAATGCGCTGCTTGC 134044 28 100.0 33 ............................ TTACGATGTTGAAAAAGCGATGTCGGCTGTAGG 134105 28 100.0 33 ............................ CCAACGGGTATAGTTTTAACTCCGCTTTTCTCA 134166 28 100.0 33 ............................ TATCCGGCGGCCATGATCCCCGGCATGGCGTCC 134227 28 100.0 33 ............................ TCCACATTTTCAAAATGCGGTAAACTTCTTTCG 134288 28 100.0 33 ............................ CGTGGCAAGCTCCGTCCCGCCTCCGTGCTGGAT 134349 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 134410 28 96.4 33 ............C............... TCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 134471 28 100.0 33 ............................ TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 134532 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAAGACGTCGCGCTATATTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143314-144927 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNV02000002.1 Klebsiella pneumoniae strain AS006665 AS006665-illumina-1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 143314 28 100.0 33 ............................ TATAAATATTTCTTTCGCACCAGAGGATATTCC 143375 28 100.0 33 ............................ CCACATCAGGCCAGTACACCCGACGTTGTACGC 143436 28 100.0 33 ............................ TTTCTTTATCTGAATCGTCATGGTTATAACGGA 143497 28 100.0 33 ............................ TATGGAAACGGCGGAAAAAGCCGGGCTGGCCAG 143558 28 100.0 33 ............................ CGGACGCGTCTATCCCGGAGCCAATATCGCCGC 143619 28 100.0 33 ............................ CCTGTTCATACAGCTCATTCGCACGGATGAGAT 143680 28 100.0 33 ............................ TATTGGGCATCAAGGATCCTCCACGCGATTGCC 143741 28 100.0 33 ............................ TGATTCGGATAAGTGTCTTAAGGTCGTTGCTGA 143802 28 100.0 33 ............................ CAAAAAATAAACGTCGTTCCTCTTCTATACCTT 143863 28 100.0 33 ............................ CGTGATAGTTGATGCTGGTTGGTCAGCTGTCAG 143924 28 100.0 33 ............................ TGGGTGGCAGGCGAAAACCTGCAGGAGATCGGC 143985 28 100.0 33 ............................ CGGGATGGCCTACCCCAACCACCGAATCTGCGA 144046 28 100.0 33 ............................ TCGATATCGCTTTGAGTACACCGTAGAGGATCA 144107 28 100.0 33 ............................ CTACGACTATTCGATCTCTTACGCGCAGCTTGA 144168 28 100.0 34 ............................ CTCGACGATTCGCCGCTGGCTGACGGGTAAATCG 144230 28 100.0 33 ............................ TACCACTGGCGTCAGTAACAACTAAGGACATAG 144291 28 100.0 33 ............................ CATGTTCTGGGACGAGTACAAGGTCGCCTGGCA 144352 28 100.0 33 ............................ CACGCTGAAAGTGGTTAATGGCATCAGCGGAAT 144413 28 100.0 33 ............................ CGATATTGTCGAGCCCGTTGGCGCTGCATTCGT 144474 28 100.0 33 ............................ TTTCAGGAGAACTGGTATTGGTCAGAATAGCCT 144535 28 100.0 33 ............................ CTGTTCATGCGTTAGTAATCTCCACTGATAACG 144596 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 144657 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 144718 28 100.0 33 ............................ TGGCGATATCCACGCTGCGGCCAATGGCCAGCT 144779 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 144840 28 96.4 33 ........T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 144901 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================== ================== 27 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGAGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTTGCTACAAGGGTGAGGTCAGAAACCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //