Array 1 119926-121472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSJ01000001.1 Halochromatium glycolicum strain DSM 11080 scaffold0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 119926 37 100.0 36 ..................................... GAGTTCGCCTGTGACGCCACGTTCGTCACGCACTAC 119999 37 100.0 34 ..................................... ATGCCGCCAGGTGCCCACGGTGTAGGTCACGCCC 120070 37 100.0 34 ..................................... CGGCACCCTGCCACCCCTTCCTGCCTGCTGAAGC 120141 37 100.0 37 ..................................... TGGTTGCTCATGGCGGCCTCGATCAGGCGCCGCACCA 120215 37 100.0 35 ..................................... CAGGACTACGGCTTCACGGCGCACCCGCACCCGGG 120287 37 100.0 36 ..................................... CTCCACAGTAATGACCGCCACACCGTCCACGCGGCT 120360 37 100.0 35 ..................................... ATCACGGCTGACCTGATTTCCGGAATGGCCTCCGG 120432 37 100.0 34 ..................................... ACTGAGGGGCTGTGACTCGCGCGGGCAGGACCAA 120503 37 100.0 35 ..................................... CGACGAGACACATCAGTATTCAGCATCTCATCGAG 120575 37 100.0 35 ..................................... TTCGCAGAACACATCCGGCCTGAGCGCAGCCGCCG 120647 37 100.0 35 ..................................... AGTTGCAATACGTCGTGTTGCCGAATGTCTGGCAG 120719 37 100.0 35 ..................................... GCGCCCTCGACAAGCCGACCATCGCCTATGTCGAC 120791 37 100.0 34 ..................................... CTGCGTTCACGGTCATTGCTGCGCTCCTGCCCGC 120862 37 100.0 34 ..................................... GGGTGCCATCTGCGCCAAACGGCTTGTGACATCG 120933 37 100.0 34 ..................................... TAACGCTGCCCGAGCACGCCGATCTGCCAGACGA 121004 37 100.0 36 ..................................... GATGCGATCGCAAACGGGATCAAAGCCAATGATGAT 121077 37 100.0 36 ..................................... AGTAGCCTGTTGCGAGCCGACTGCGCGCTGATCCCG 121150 37 100.0 36 ..................................... AGATGCCTGCTCTTGCATGGCATCCACTTCTTGCTG 121223 37 100.0 34 ..................................... TTCGCTTTCGTGTGGTGGCTCTCCAGGTAGATTA 121294 37 89.2 35 A.......T...........T..A............. AGCTCAAACGCGGCCTGCACGCCAACCTACCCACC 121366 37 100.0 34 ..................................... TCGGTTCCTGCTCGGTTTTCCGGGCGCGTGGTCT 121437 36 86.5 0 ........T............C..-.G.........A | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 98.9 35 GCATCGCCCGGCTAATCGGCCGGGCGCGGATTGAAAC # Left flank : AGCGGGGGTTCCTGGCGTATCGGGGGCATCATGCTCGTCATCGTCACCTACGATGTGTCCACTGTCACGCCCGCTGGCCAGAAGCGTCTGCGCCGCGTCGCAAAGGCTTGTGAGCGCTACGGGCAACGGGTTCAGAAGTCGGTGTTCGAATGCCAGGTCGACGACATGCAGTTCGAAGCATTGGAACGGAGATTGCTCGATGAGATCGACCCTGAGGCCGACAACCTTCGTTTCTACCGGCTCACCGAACCTCATCATCTTAGGGTCAAGCAGTACGGCGTGTTTCGTTCTGTCGACTTCGAAGGTCCTCTCGTCGTGTGAGCTGCGCGAACCCGAAGTGGGCTCGTGATCCCAGACCTTTCGCGCGTAAGCTAACAGTTTGATCTGTAGAACATTATCTTTTCGAGCCAGAGGGTCGGCTGCTGTGATCTTGCTTCAAGATTCCAGTTCGCGCGAAGATCGCAAAATCCGCAGCGAAATCGATGACTTCCGCGTGCGGC # Right flank : ACAAAATGAGCTCTTCTTGCTCGTCTACACGCTTGGCATCGCCCTGCTGATCAGTCGGCTGCTCACATCAGTGCTGCGGAATCTGCTCCGCGCGGATCAGCTCTCGGAACATCGACTCGTCGGTTACGCGGAGGCGCCGGCTCAGCTCCCGTCCGATGTTCATCTGCACCAGCGCGAATTGCTCTAGGTCGCGCTCGTAAAGGCGCATGATGGCGTTGTGATTGAGCTCGATCGCGGCGCAGTCGGTCATTGCAAGCACCGATGCACTGCGACGGCCGAGATCGATCAACGACATCTCGCCGATGCTGTCACCGACATTGAGGTAGTTCAGGCGGTAGTAGACGTCGTTCCATTGCTTCAGGATCGCGACCTGTCCCTTCTCGAGGACGTACATCGCATCGCCGGGATCATCTTCGATGAACAGGAAGTCACCTTCCTTTAAGAATACGGTACGCACCTGCTCGAGCAGGAACTCGACGATGTCGTCCCGGACGCCGCCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCTAATCGGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.30,-15.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 83691-83962 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSJ01000018.1 Halochromatium glycolicum strain DSM 11080 scaffold0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83691 28 100.0 33 ............................ CCCGACATCGGGCACGACCAAGCCCGCGCCAAC 83752 28 100.0 33 ............................ GATTTTATCCGTTGGAGGTAATTCGATAACCCC 83813 28 100.0 33 ............................ GGGGACACATGTCCCACGGACAGGACTCGGTAA 83874 28 100.0 33 ............................ CGGAACTTTCGGTTCCATTCTTACCGGCATGGA 83935 28 92.9 0 ........................AA.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GGTCTCTCCGCGCGCGCGAGGGGTCGCG # Left flank : GGAGTGAGGGGCGCCCTGCAAATCAGCATGGTCCAGATTTGGACCATGGTTTCTCCGCGCGCGCGAGGGGTCGCGTTTCAAATGCGACCCTTTAGCACTCTAGTGCTAGCTTTGCCCGTTACCGCGTAACGATGGCGATGATGGGCTGTTACCCGGTAACGGACATTTCGCGGCTCACACTTGAGCCACCAGAACGCACCACCGCCCGCGCGAAGGGGCAACGATCGGCTAGAAATCAAGCCGATGTCTTATCACCCCCGCCCTGGTCGCGCCCCTGCTACCCCTCGCTGATGTCAACCACCGCGGGACCGACCAGAATGATAGGCAGCACCTATCGGGCATGGATTTTGGCGGGTTAGCTTCGTCAATGGGTTAGAGAATCCAAAGCATGAAACGTACCCATAGGCAGGCCCGATCGTCCCGGCATGGCCCCGATGTTGCTTAGGGCGCAGCGCGAGCGGCGACCTAAAGGGGGAGGTCCAGTAGACCCCCTATCTCGA # Right flank : GCAAATCTGCGTTATCTTGTAAATCATAGACTTGGGTCTTTCCGCACGGCTGCGGAGTGAAGGGCTGCCGAAGGAGATGGTCGTCTCGACAGGGAGGTGCTCTTCGAGATGAAGGTGATGGTCGTCTCGACAGGGAGGTGCTGGTCATCGCGCTGTCTTCGACCCGTTCCTGGGTGAGGTTCTGAACAAATCCGTGTAATGTTGTGCTACTGTTCTCGGTGTATCACTGTGCGCTGCTGTGACCGAGAATCCTTGCCAAGGTTGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATCAAAGATTTAGGCCGGCTCTATGCCGGCCTTTTCATTTCTGTCACGGTTTGTGGCACGACCCACCGCATCGATGTATTCCTGCCGGTGATCCGCTCGGCCTCGGTATCGCTATAGGGTTTTGCCTGCCTCACCCGATGAATCCGATTGCGTTGCTTGGGGGCCGGTAGGAGGCGATAGGGCGTCGTTGGGGCGGGGTCGC # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTCTCCGCGCGCGCGAGGGGTCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 809-3557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSJ01000003.1 Halochromatium glycolicum strain DSM 11080 scaffold0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 809 36 100.0 33 .................................... ACGTGTGAGTGTCAAGGCTTCCCTGCCCCGATG 878 36 100.0 33 .................................... CGGCTCGCGCACTACACGCTTAACCAAGCGAGG 947 36 100.0 33 .................................... TGATCATTAAAACAAGTGTGTCATGGGGTTGCA 1016 36 100.0 35 .................................... TCTGCAGTTGGGAGTGCATACGCCTTGCCTGGCAT 1087 36 100.0 36 .................................... TTCTGGATGCTGGCTAGGTTGATGTTCATGGTTTTT 1159 36 100.0 33 .................................... TTGACGGTTACGTCTGCTTGCCACTTGTTTCCC 1228 36 100.0 33 .................................... GTCCAGAACAGTAGTAGGTCCGATGATGATTTT 1297 36 100.0 35 .................................... GGACGCTCGCCATTGGCTGTAGAACTCCGTGATCG 1368 36 100.0 33 .................................... CACTAAGTCCCGCTCGGTCAACACTGCCGAGCC 1437 36 100.0 33 .................................... TCCAGATTGGTCGGGCCTTGTTGTCCCTCATAC 1506 36 100.0 32 .................................... AATACAGTTCGACCCAGTGGTCGGCTGTATTG 1574 36 100.0 33 .................................... TCACCCAAGGGATGGACCCATCGGACGCTCGCC 1643 36 100.0 34 .................................... ACGCATAACACTTTGAACACACGGACCCTCGAAC 1713 36 100.0 34 .................................... CATCGCGGATCATCGAGACCCTGTAAGCGTTTGT 1783 36 100.0 34 .................................... TCATTCTTACGGAACGTCACAGTCAGGAACCGAC 1853 36 100.0 35 .................................... CTTTCCCGCAACGTATGTTGCTTTCGCAGCTTCAT 1924 36 100.0 33 .................................... GGCTGTGTCGGTAGCAAGATGGCTGAACAGTGT 1993 36 100.0 32 .................................... CTTTTTTGTAACATGGGGCTGGCGCCTGCACG 2061 36 100.0 33 .................................... TATTATTTTTGTTACAAAGTAACGAAAAGGATA 2130 36 100.0 31 .................................... GCCGATCGCCCGACGCTTGCTTGGCGTCCTT 2197 36 100.0 34 .................................... AAGTTGTTAAAGATCGAGGTAAGCTCGGCGGCTA 2267 36 100.0 33 .................................... CCCACCAGGGAAAACCCTGGTCATCGGTGTGAT 2336 36 100.0 33 .................................... AAGAGTCCCGTCCCATTTGCCGAAGAATGCGGC 2405 36 100.0 36 .................................... CTAGACGTGACCTTCCCGTTGACCGCGCCATTAGCG 2477 36 100.0 35 .................................... GATCACGCGCTCGGCGAGCTTGTCCATCAGCTCGC 2548 36 100.0 35 .................................... GCCCGCGTAACAGCGCGACGTTGAGCAGTACCAAT 2619 36 97.2 33 .............G...................... ACGGTTGCAGCCCAGTTTGTTACACGGAGCGCT 2688 36 100.0 35 .................................... CGACAAGGCACCGTCTAGTTTGGTTGCGAGCGCAC 2759 36 100.0 34 .................................... CAGTGCTCGCGCGAGAGCTTGACGCTTTTCATTT 2829 36 100.0 34 .................................... CACGCAATTCCGTAATAATTGACGCGCGGGTCGT 2899 36 100.0 31 .................................... TTTTGGAGAACTCGGTCAGTGCGGCCGAGTT 2966 36 100.0 32 .................................... CCATCTGATCGGTGCCGCCGATGACGCGGGTC 3034 36 100.0 34 .................................... CGCTCTAGGTCTTTTGCGCATTCGGCTCTGAGTT 3104 36 100.0 33 .................................... GTGTGCGATCTCGCGCGCTTCCCGCTTGGTCTT 3173 36 100.0 35 .................................... AGCGCCGGACAGGCGCACCTTGATGCGGGCATGGC 3244 36 100.0 32 .................................... GCGATCTCTCGCACGAGTTCATCAATCCCGCG 3312 36 100.0 34 .................................... CGAAACAATCGATACGTTGGTCTTCATCCCAAGT 3382 36 100.0 35 .................................... CGTGACCATTCCCTTAATCTATTAACCGCTATTCT 3453 36 100.0 33 .................................... GGCGGTGCAAGCGGGTCGTTCTGCGCGTCCCGT 3522 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 40 36 99.9 34 GTCCGAACTGAGACCCGATCTGAAGGGGATTAAGAC # Left flank : GCACTTCGTTGCCTTCGCTTGGCACTACCTTGCCTTTGGTCCACTTCGCTCTGGCCGATTGGACCGCGTCCGGCCAGCCTGGGCGGCTTCTTACGCGGCGCCCGCACCGCGTCGCTGACAAGGAACGACTGAGCCCTCCCAGGTTCCTGGGTGACCCTTGCAACCATGCCCTGCTCTCAGACCCCGGTGGAGTGCGCGCATCCGGCCACTGTCAATCCGCTCACTGTTGCCTTCCGCCTTTTCCACAACGTCGGCTCCACATTCACTCTTTCGAGGCTCAATCACACGGCCTAGTTGCCCCCTGTGTACGCTTCGCAGGTGGGGTCGCCCCCACACCACGCAACACTCGGTTCCGGTGGATGGCCAGTCCTTTCCGGTTCGGGACTTTCACCCGGCGGGTCACAATAAGAGGTTTCCGATCACTCAAATCATTTCGCGATCATCCCCCTCTTCCAGGCTTTGCCTGGCGCAAGAAAATAAAGGCTTTGCAGCGTCCAGCG # Right flank : CTCAAAAAACTCTAGCGATTCGCTTCCGGGCCAGCGCTTCGTGCGCCTATGCGCGGCCCGTACGGTGCAGATGCTGTGATGGCCCGAGCGAGCGGCGCCGCCCATCACCAACCCGAACCTGCCCGCCCCGACCGCCACCGCCTGGCTGCCCTGGTGCATCGCCGATTCCGCCGAGGCATCCCCGCACCCCGGCGCCCTGCCAGCGATCCCGGCCGGCGGCGCCGGCTGGCTGATGGCTGCTGCGGGCGGCCACTGGGCCGACGGCAGCTCGGGTCTCGGTCGTCGCCCGTAAGCGGCCATCAAACCGGCCTTGTATCGGCCCGCTAAGCTGACAACGCTCTGATAGAATTGGTCATATGCAAGAGACGCATCCGGCCAATCAAGCGGTCAGTCTCGTTGATCGAGGCGAGAGCGCGGCCGCGATGATGCCGCTGACGATCGGGCAAACGGTACCCGAGCGTGAGGCGCTCAGCGATCAGGTCGTCGCGCTCGTCGCCCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACTGAGACCCGATCTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 156224-160229 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRSJ01000005.1 Halochromatium glycolicum strain DSM 11080 scaffold0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 156224 27 92.9 37 T....-...................... GTTGGCTGTCAAAGAGTGCAAGAGTTCAGGTGCAATC G [156226] 156289 28 96.4 36 .......T.................... ACCCCTGCGCGGCCGCAGCGCGACCATCACCGCCAT 156353 28 100.0 41 ............................ GACCAGCGGCGCGATGTACGACCTCAGCCCGGACTCTTCAT 156422 27 85.7 36 A......T.T.-................ GCTCCTTCCAATAGGCGAGTGCCAACAAGGTGAAGC 156485 28 100.0 36 ............................ GATGCGCGTTGTGCATTTGGATATTACTCACTTGCC 156549 28 100.0 36 ............................ GAGTGTTACGGACTCGCCATCCGCAAGCGTAATTGG 156613 28 100.0 36 ............................ TCACCTCGCGAATCAGCGCAGAGTCTGCCCCGAGCA 156677 28 100.0 36 ............................ TGATCCGTCCAGCTTGGCGATAACACGATCGCCAGA 156741 28 100.0 36 ............................ GCGAACGCGCAAGCACCACGCTCGCGATGCGTCGAG 156805 28 100.0 36 ............................ GCGCTGATCCGGCGCGAGAAGAAGCGAGAGCAGGCG 156869 28 100.0 36 ............................ CCCTGAACGTGCCGCTCGCCAATTCATCGCGGAACG 156933 28 100.0 36 ............................ GACTCAGCGATTGCGCGTTCAGCGCCGTGCGCCGAT 156997 28 100.0 35 ............................ TTGCGCCCCGCGCGAACAGCCGGGAGATCGGCCGT 157060 28 100.0 36 ............................ CGTGAGCGCGACAGACGCATCGGGCAAAACGCCTTG 157124 28 100.0 36 ............................ ATCGTTTCGCAAGCGCGGCAAGCGCTGGTATGCCGA 157188 28 100.0 36 ............................ GCTTCGCAAGATGGGCGGCACCGTCCGCGACATCTG 157252 28 100.0 36 ............................ CGCCCGCGTGCGCTTTGGTGAAGATGGCAGCGACGA 157316 28 100.0 36 ............................ CCTTACTCAACGCCGATCAGGGTCGCTGGGTCTACG 157380 28 100.0 36 ............................ GAGGGCATCGTGCGCCAGTGCTGACGGCGCCAACCG 157444 28 100.0 36 ............................ AAGGCCGAAGTCGCCTACGTCGGCGCACTCGTGCCG 157508 28 100.0 35 ............................ CAGCGCCTGCGGCCCCGTGTAAGTCATTGATCGCG 157571 28 100.0 36 ............................ TGGATTGCTCGCGATTGTGCTCGGACTGCAAGCGAT 157635 28 100.0 36 ............................ TACCGCAAGTCGAAAGAAGTCGTCTTTGTCCTGCTC 157699 28 100.0 36 ............................ GGGTGTTTTCTCAATGGATCAGCGCCGAGGGCGCGG 157763 28 100.0 36 ............................ ATGCAGCAGGCCGAGTGCCTTGGTGCGCTGCATCGC 157827 28 100.0 36 ............................ TATTAGCAATAGTTGCGTTGACATAAGCATACACTT 157891 28 100.0 37 ............................ TCGTCGCGGCTTAACGGAGTGCCCCGGCTGTATGCAG 157956 28 100.0 36 ............................ GGTCACCATTGCCTACTGGAAGAATTAAAGCATCTT 158020 28 100.0 37 ............................ TTGCGTTGTTTGAACGCTTGCCGTCAAACGGAGATCA 158085 28 100.0 35 ............................ GGCACATCCTCGTCGAAGTTCTGCGGCTGATTACC 158148 28 100.0 36 ............................ TGAAGCCGCTTGATCTGCTGCGGGACCGGAGGCGGT 158212 28 100.0 36 ............................ CACGACCAGCGAAGACTTCGCGCTCGAACCCTTCCA 158276 28 100.0 37 ............................ TCGTCGCGGCTTAACAGAGTGCCCTGGGTGCATGCAG 158341 28 96.4 36 ....A....................... GCCGGGCTGCGCGGTCGCGGTATGTCCGTAGCCGAT 158405 28 100.0 36 ............................ GACGCCGAGCTGCCATTGGCGGGCGCCGGCGCGCAG 158469 28 100.0 36 ............................ GCTCCCCGGTGGCGCTGTCTGCCGTGGGCGCCTGCT 158533 28 100.0 36 ............................ ATGCGGCGGCCTCCTGGATGGGACGCACGGCGTCGC 158597 28 100.0 37 ............................ CCCAGTCGGTGCGGTGCGAGTGCTTATTGGCGCGATA 158662 28 100.0 36 ............................ CCGCCCGGCCAAGAAGATCACCGACACCGAGATCAC 158726 28 100.0 36 ............................ CTGTGTGGTCTGAGCGACCGCCACGCTGCCAAACGT 158790 28 100.0 37 ............................ CAGCAACACGCAGTGCGCTACATCGCGACGCATATCC 158855 28 100.0 36 ............................ GAGGCTAAAGCACAAAGAGACACCCGCAATGGATCG 158919 28 100.0 36 ............................ TGCGGATTTTTGCAAAGACGTATGAGCCGCCTTCAA 158983 28 100.0 36 ............................ CGTGCACCAAAAGGCTCGTCTGCATCTTGGCGCCGG 159047 28 100.0 36 ............................ GCGGTCAACGTGCTGCTGTTCGTCTCCGAACTCGAG 159111 28 100.0 37 ............................ TCGCCTTGCGCTGGATCGTGTGCCAGATCACCGCCTC 159176 28 100.0 36 ............................ TCATTGCATTGGCCTCTCTGTTGCGTGATTCAGTTC 159240 28 100.0 36 ............................ GGTCGCTTTGATGGCGGCTTCGCGGTCTGCCTGGGT 159304 28 100.0 35 ............................ CCGTTGATCAGCACACCGCCGCCGGTGGCATTGAT 159367 28 100.0 36 ............................ GCCTGGGGCAGGGGCACGAGACCTGGGGCCGCGAGG 159431 28 100.0 36 ............................ GCGCGTGTTCTTTAAGCCGCGGGACGCCGGCAGCGG 159495 28 100.0 36 ............................ ACAGGTGGATGCCTTTAAGGCGCTGGGCGGCGGGGT 159559 28 100.0 36 ............................ GCTCTGGTCTTCGTAGAGGACGCGGTTGACACACAG 159623 28 100.0 36 ............................ GATCAATTCACCACCGAGCTAGACCGCGGTTACTGC 159687 28 100.0 36 ............................ GATCGGCACCGAGCGCAGAACGCGCATCGATTACAA 159751 28 100.0 36 ............................ GAGGCAGTACCCGATCACGCGAGCTATGCCGTGCGT 159815 28 100.0 37 ............................ GGATGATGAAGACGAAGTCGAAGTCGAGACGGACAAT 159880 28 100.0 36 ............................ GGCCCTGATCGCCGCGCCTGACAGTCTAGGCGGAGA 159944 28 100.0 37 ............................ GATCTGCGCAAGATTGCGCGTGTTCGCCAGTCCGAGT 160009 28 100.0 36 ............................ GATCCGCAGTATCGACTTAAAGCGAGCGAACTGCTG 160073 28 100.0 37 ............................ GTTCCGCCAGGCTGTCTGCACGCCCGTCCCGATCGGT 160138 28 100.0 36 ............................ ACGCGACGCGCGAAGGGAAGGTCGTCTCACACTCGG 160202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 63 28 99.5 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : CATCATCACCGCCGCCTTGCTTGAGGGCCGGCAGCTCAGGATTCGCTACCACAGCCGGTCGAAGGACAGCCAGAGCGACCGTCTCATTCACCCGCAGCGGCTCCTGCGCTATCGCGACAACTGGTACCTGATCGCCGACTGCGACCACGCTCGCGCGCTCCGCACCTTCTCGCTCGACCGCATCACCCATGCGGAGAAGCTTGCCGGCCGGGCGCGCGTGCACGATCAGCAGACGCTCGACCGGTTCCTCGGCGCCAGCTTCGGCATCTTCTCCGGCAACGCCAGCGCGTGGGCCGTGCTGCGGTTCAGCCCAGAGGCGTCACGCTGGGTCGCGGACGAGGTTTGGCACCCGGACCAGCTCGGTCAATGGAGCGAGGGAAGCTACGAGCTCCAGATCCCCTACTCCGACCCGCGCGAGCTGCTGATGGACATCCTCAAGTACGGGCCAGAGGTCGAGGTGATGGCGCCAAAGGAATTGCGGGAGATGGTGGCGGAGCGCC # Right flank : CCCTCGTTTTTGCGCGCCTCGACGCATGAGGAGTCTACACGAAGCAGGGCGTGCTAGCGGATGCATCGAGCCAGTGGAGCATCTGAGAGGGTGGTTCGAGGCTTCAGCGGAGGTCGAAGTCGGTCACAGGGTGTCAAAATCCGAGCTGTGGCGGTTGTCTTGCTCGCGCTTGACCTCGCCCTTACCGGATTGGTCCTTGACCAGATGAACCACATGAACATTGCGGCGGTTGGCGGCAGTGATCTCGGTGAGACGATCCTCAGGGATCATCACCTGGCTGAGCTCACGCCGCAGCCGTACGGCATTCGCTTCCGTGATGTCGCCGGTAAAGACCGAGTATTGCTCGTGGTTGAGGTAGCGACGCAGCAGCTTCCGAAAGATGCTCGTGCGTGTCGCTTCGACGTCATAGGTGACCAGCATGAACATCGTCAGACTCTACGTGTAAAGGCGACGTACTCTTCGACGTCGAGTACGTGTCGCTCGATCCCGAGCGCCTCGCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //