Array 1 99971-98358 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOG01000005.1 Gordonibacter urolithinfaciens strain ResAG-5 ResAG5_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99970 36 100.0 30 .................................... TGCATGTAAAGAATAATTTCGGAGTCATTG 99904 36 100.0 30 .................................... CCAGCACGCCGGACGCCAGCGCGTCCTGGC 99838 36 100.0 30 .................................... CAGCGCCGACGAGAAGGAGCTCACGGACAC 99772 36 100.0 30 .................................... AACCGTCGTGCCCCTTGAACACGATGATGG 99706 36 100.0 30 .................................... CATGGTGGGCAACGACCTCGTGCTGGGCCG 99640 36 100.0 29 .................................... TAGGCGAGACGGTGTACGCGCTGCAAGGC 99575 36 100.0 29 .................................... TTGGAATATGCACAAATGCCGATCAACAT 99510 36 100.0 30 .................................... CCTTGGCCGCAAGGCCAAACGCATCGGATA 99444 36 100.0 29 .................................... TTGCGCAGTAAGGCACACCGCTGGTCCCG 99379 36 100.0 30 .................................... GATACCCTTTGCTGGGATGATTATATATGG 99313 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 99247 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 99181 36 100.0 30 .................................... GGCAGAGAAGTACACGACAACGGTCAGTGC 99115 36 100.0 29 .................................... AGATCGACGAGGGTCGCCGCTGGATCTAC 99050 36 100.0 29 .................................... TCAAAAACGGAATCGTCCCTGTCGTGAAG 98985 36 100.0 30 .................................... GCCGGGGCGGCAGCTTCGGCCTTTTCTATT 98919 36 100.0 30 .................................... CCCGACCGAAAGGCCCAGTACATTCAGGCG 98853 36 97.2 29 ..........G......................... CCGAAAAGCTCCGGCTTATTGCACGAGGC 98788 36 97.2 30 .........T.......................... TAAACGGTTTGAAGGACGGCATCATGAGCG 98722 36 100.0 30 .................................... AAGCTCGCAAAGCTCGTCAGCGGAATCGCA 98656 36 100.0 30 .................................... GCCCGAGTTCTACGCCAACCGCTACAAAGA 98590 36 97.2 29 ...................T................ CCTCGCGCACGTACTCTCGCCTGTCAATG 98525 36 91.7 30 ..............G.......G.....G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 98459 36 75.0 29 ..A..A.TA.G.....G...C.....T.......G. TCATCTTGGGCGCGTAGCCTTCGGTAGCC 98394 36 77.8 0 ..........G...G.TGG.G.........A....A | T [98360] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 97.4 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGCTTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAAGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTACGCTTTTGAAGTACAATGGGAAATGCGAAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGAAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATATTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCGCATTGACGTGCATTTTCTGCAATCATGAAAAGTTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCAACG # Right flank : CGAATAGGGTGATCGACTCGCGGGCATCACTTTATTTCGGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGAACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGTCGCAGATCCTCGAGCGGCTGGAGGCGCAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCCTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTATGCGCTGGAACGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGATGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAGAGCGACGCGTTGGTCGAGGCCGTGAAGAGGCTCGCGTCCGCCCGCCAGCGCGCGCTGCTCGACAAGCGCCTGCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 32607-33826 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOG01000006.1 Gordonibacter urolithinfaciens strain ResAG-5 ResAG5_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32607 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 32673 32 100.0 34 ................................ CTGGACCGGGTGCTGCTGCACGAGGCGGCGCACT 32739 32 100.0 34 ................................ TCCATGTGCCGCGCCACGCGCAGCAGGGCCGAGT 32805 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 32871 32 100.0 33 ................................ CTCTTGAGGATCGAGCGGTAGGTCGAGCCGTGC 32936 32 100.0 34 ................................ TTCTTCGATATGCTGGCCAAGACCGCCCACAAAC 33002 32 100.0 33 ................................ ATTTCGCCCTCTCCGTTTCCTCGTGTCACGCCG 33067 32 100.0 33 ................................ TCCGTGTCGTACCGCTTGCCGTTTATGGTCTTG 33132 32 100.0 33 ................................ CAATGGACTCGTACTTTGATAATCACGCCGGAC 33197 32 100.0 36 ................................ AACGAAGCGGTTGACGCCGTTGTAGTTAACGGGGAT 33265 32 100.0 34 ................................ CACAGGCTGGAGCGGCCTGCGGTGAACTCCTTGG 33331 32 100.0 33 ................................ TCTCTGCTCGAAGCGGGTGCCCAGGGCGGCGCG 33396 32 100.0 35 ................................ TCCTTGGTGGCCGCAGGAATTGCCGCCGGCTGGAT 33463 32 100.0 34 ................................ TCCATGGTGACATGTTGGTGACACCGGGTAGGCA 33529 32 100.0 35 ................................ CACCAGCCCGTGCGCTCGCCCGACGAGGTGGCGCG 33596 32 100.0 34 ................................ AAAAAAGTATCAATACGGAGAAGGTTACACATGG 33662 32 100.0 34 ................................ CGCGGTATCGGCGTCTACGTGGACGAGGGCCTCG 33728 32 81.2 34 ......T..TCGC..................C TCGAAAGAGAGCGCCGAGTGGTAGCCTGAGCCGT T [33734] 33795 32 81.2 0 ..T..A...TTCG................... | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.0 34 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCATCGCGCCGAGCCCGCTCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGAGGTCTCGCGCGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGCCCAGAGGGATAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : TGCCGCTGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGCTGTGAATTGGGTGCGCACCGTAGCGGTATCGCGCTCTTAGCACCGGTTTCGACAGACATTTGCGTCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAATACGGTGATCTTTCAGTTGAGGTTCTCTCGGCAGACTCGTCGGCAAGTAGCCTTCTTCCGTTGTCGTTCGATGGAGAGCCAACCGACGAGCGTCTCTTCGAATGGATTCGTCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGCAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43381-44905 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOG01000006.1 Gordonibacter urolithinfaciens strain ResAG-5 ResAG5_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 43381 31 100.0 34 ............................... CCGCAATCGCACCGACAACGCCAAACGACGGAGC 43446 31 100.0 33 ............................... ATCAGCACGGTGCACCCCATGCACTACCGCGTG 43510 31 100.0 32 ............................... TCCGTGGACTCCTACGCCGACGTTGTCGAGGC 43573 31 100.0 35 ............................... TCCATGTGCCGCGCCACGCGCAGCAGGGCCGAGTG 43639 31 100.0 35 ............................... TCCTTGGTCGCGCCGAGGATCAGGTTGAGGCCGCG 43705 31 100.0 33 ............................... TCCTCCAGCACCGACTCCTGCAGCGACCCGTCG 43769 31 100.0 35 ............................... CCTGGAGCCACTCCCACAGGTCGTACACCCCCTTC 43835 31 100.0 33 ............................... ATAATCGTCCGCAACGCCGGGATGGTGGTCGTG 43899 31 100.0 33 ............................... CTCTCGCAGAATCCCACGCGTTTTCGCGTGGTA 43963 31 100.0 34 ............................... CATGTCACGATCGACGTGAGCATACTCGCCGTCC 44028 31 100.0 34 ............................... CTCGAAGCAATACGTTTTCGCGCGAAGGGCCTTG 44093 31 100.0 33 ............................... GGTACACCAACACATGGCTCGTGACCGAGGAGA 44157 31 100.0 33 ............................... TTGATATCGCAGATGCCCGTGGGCACCCATATG 44221 31 100.0 35 ............................... CCGAGCTGGCCGCGCTCTCGCGCGAGGAGGTGCTG 44287 31 100.0 33 ............................... AAGCGCAACGGCGTGCCGAGCCGCTACGCATCG 44351 31 96.8 36 ..........T.................... AAGAAGGGGCAGCAGGTGGACGCTCCGCCCGCTCTG 44418 31 100.0 33 ............................... TGAAAATAACCCTTTACCAGAGTCAATACCTTG 44482 31 100.0 37 ............................... TGGACGTATGTCGAGCTCTCCAGACCGAGCCCGGCGC 44550 31 100.0 33 ............................... ACGGACGGCGACGATTACATGGACGCCGTGGGG 44614 31 100.0 34 ............................... TTCGTCTCTTACGTTTGCGCGTAGCCTTCGGTAT 44679 31 100.0 35 ............................... GTCATCACCCGCAACGCCGGGATGGTGGTCGTGTC 44745 31 100.0 35 ............................... CAAAGCTGCTTTTCCGGTGCCACGAACTCGCCGCC 44811 31 100.0 33 ............................... CTCGTAGTGGCGCCGGATGTGACACATGGCGTC 44875 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 24 31 99.9 34 GTCGAGCCCTCACGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTCGTTACGTACGATGTGGAAACGGCAAGCCCGCAGGGATCTCGCCGGTTGCGCCGGGTTGCGAAGATTTGCGTGCAGTATGGCCAACGCGTGCAGAACTCGGTGTTCGAATGTTCGCTCGATCCGGCGCAGTTTGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGAAAAGTCGAGCACGTGGGAGCAAAGGAGGCTTATGACCCGGAAGGGCTCCTATGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAAGCTTCATAAGCCCGCTGATAGCTGTTCATGGGGCGGACTGATTGTCTAATGTGAATATGATAATCAGAATATACGTATATATGCATATCCTGACA # Right flank : CCTCATGGGGGCAGCAGCCGGCATCGACCAGCTGTGTACGCCCGCCCGACTCCGCGCACATGCTATGTCGCACCCCTCGACGGGCGGTAGCGACGAGCGGCGAGCCGGCTAGCGCAATCCCGGCTACCTGCAAGGAGGCTCGGCGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGTGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCGACTATCGCCCCCGTAGGGGACGGTCTCCAGCAAGCCCAGGTCGTGCGCGTGGTCGACGGCGACACGCTCAAGGTGAGCGTGCCTGGCGAAGCGGACGCCACGGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCACGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //