Array 1 8531-9534 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCFU01000247.1 Escherichia coli strain KCJ3815 NODE_5_length_45607_cov_3.41675_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8531 29 100.0 32 ............................. CAGGAGATCCCCGGAATATGGACCCAGAGCAG 8592 29 100.0 32 ............................. GTGGGTAAATTTAAATGAGTGATAATAATGAG 8653 29 100.0 32 ............................. GTCGCAGGCCTGGCAGTTCTTATCGTGATCTA 8714 29 100.0 32 ............................. CCTACCTTTTAACACAACCACGCTTTATTGCA 8775 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 8836 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 8897 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 8958 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9019 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9080 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9141 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9202 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9262 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9323 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9384 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9445 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9506 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8420-9851 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCFU01000203.1 Escherichia coli strain KCJ3815 NODE_82_length_16540_cov_3.72217_ID_163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8420 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 8481 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 8542 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 8603 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 8664 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 8725 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 8786 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 8847 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 8908 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 8969 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 9030 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 9091 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 9152 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 9213 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 9274 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 9335 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 9396 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 9457 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 9518 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 9579 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 9640 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 9701 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 9762 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 9823 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //