Array 1 20804-20984 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000101.1 Fischerella thermalis WC157 NODE_830_length_117094_cov_52.289837, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 20804 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 20877 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 20949 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 433-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 432 37 100.0 34 ..................................... CCTTAACATCCCAAGACGCGTTGTGGAGATCACG 361 37 97.3 39 ....................................A AACGAGCAATTGGCAGAAATAGAAGAAAGNNNNNNNNNN 285 37 100.0 39 ..................................... ATTTGCTTATCAATTTCTTTTACTTGAATGCGCGTTTCG 209 37 100.0 64 ..................................... TCGAGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACTTAAATTAATCCCTANNNNNNN 108 37 91.9 36 NNN.................................. TCGATGACGAATATGCATTCGCCACATTCCCTGAGG 35 35 94.6 0 ...................................-- | ========== ====== ====== ====== ===================================== ================================================================ ================== 6 37 97.3 43 TTGCAACTTAAATTAATCCCTATTAGGGATTGAAACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGCTGGGACTCGACTTGGATTGGACGGAGACGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTACCCAACCACTGGCACAGTGACCTCTTTGTTTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCCAGCACTGAAAGCCAAGGCATAAACTGCCGNNNNNNNNNNGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAATGCATAAACACTGTATACATAAGCCAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : A # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTAAATTAATCCCTATTAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 908-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 907 34 100.0 38 .................................. CAGCTGGGACTCGACTTGGATTGGACGGAGACGAAGTT 835 34 100.0 37 .................................. TACCCAACCACTGGCACAGTGACCTCTTTGTTTGGTT 764 34 100.0 42 .................................. CCCAGCACTGAAAGCCAAGGCATAAACTGCCGNNNNNNNNNN 688 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 4 34 100.0 39 GCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AATGGGAATTTCTCTGTACTCTCGAAGTACCACTCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATTCAGTAATATCGACTCCTGCCAACCAGCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTAGTGAAATTGTCCCAGAGACCGTCTGGTAGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTAAATTAATCCCTATTAGGGATTGAAACTACCCAGAAATATCGCGATCGCGCCAACAAATAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATTTGATCTTAATAAAGTGGTTTTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : CAATGCATAAACACTGTATACATAAGCCAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTCCTTAACATCCCAAGACGCGTTGTGGAGATCACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAACGAGCAATTGGCAGAAATAGAAGAAAGNNNNNNNNNNTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTATTTGCTTATCAATTTCTTTTACTTGAATGCGCGTTTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCGAGTTTACTTGCCACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 1670-1265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1669 37 94.6 33 NN................................... AATAATAATGAACTTAGGAGAGATAAAACACTT 1599 37 100.0 38 ..................................... TTGAATTTCTGGTTGTGCATCATCGTGGCANNNNNNNN 1524 37 94.6 39 NN................................... AAATAAGCAAGAGTTTCAAATGCTTCTTGTCTAGCAGGA 1448 37 100.0 40 ..................................... TAAGAATGGGAATTTCTCTGTACTCTCGAAGTACCACTCG 1371 37 100.0 33 ..................................... GATTCAGTAATATCGACTCCTGCCAACCAGCAA 1301 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 98.2 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTAATAGGGATTAATTTAAGTTGCAACTCAATACGCTGCCATTGAATATACTCCTGCTCCNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCATTTAAAAGCTTTAAAAATGCCTTTTTAGTATGCGTCGCAGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGTTCAATCTCCGGTGGCAAAGATAGTCTCGTGACAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGGACATCTCCGATAGTGGATTGCATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAGTGAAATTGTCCCAGAGACCGTCTGGTAGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTAAATTAATCCCTATTAGGGATTGAAACTACCCAGAAATATCGCGATCGCGCCAACAAATAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATTTGATCTTAATAAAGTGGTTTTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGCTGGGACTCGACTTGGATTGGACGGAGACGAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTACCCAACCACTGGCACAGTGACCTCTTTGTTTGGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NNTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 4 2102-1911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 2101 38 94.7 41 NN.................................... ATTTAAAAGCTTTAAAAATGCCTTTTTAGTATGCGTCGCAG 2022 38 100.0 36 ...................................... TGTTCAATCTCCGGTGGCAAAGATAGTCTCGTGACA 1948 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ========================================= ================== 3 38 98.2 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACC # Left flank : GGATTAATTTAAGTTGCAACGCAACTCGCCCAATTCATCTGGTTCGGGCTTAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACAGCAGTGTATTTGACGCGAACATCCCAATCCTTGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGATCGCTTGTAATTCCTCGACATTCAGCGATCGCCGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTGATCGCATCTACATACTCCGGTTTTGTGATTGATTGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTTCACATCTCGGTCGTGTTCAGTGCCACAATTTAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGCTATCTCGCTAATTTTTTGTTTATTAAATAAGTTAGNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTCAATACGCTGCCATTGAATATACTCCTGCTCCNNNNNNNN # Right flank : TGGACATCTCCGATAGTGGATTGCATATATCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATAATAATGAACTTAGGAGAGATAAAACACTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTGAATTTCTGGTTGTGCATCATCGTGGCANNNNNNNNNNTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAAATAAGCAAGAGTTTCAAATGCTTCTTGTCTAGCAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 5 2143-2689 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2143 37 97.3 46 ....................................N NNNNNNNNNCTAACTTATTTAATAAACAAAAAATTAGCGAGATAGC 2226 37 100.0 34 ..................................... TAAATTGTGGCACTGAACACGACCGAGATGTGAA 2297 37 100.0 36 ..................................... AATCAATCACAAAACCGGAGTATGTAGATGCGATCA 2370 37 100.0 35 ..................................... GGCGATCGCTGAATGTCGAGGAATTACAAGCGATC 2442 37 100.0 34 ..................................... CAAGGATTGGGATGTTCGCGTCAAATACACTGCT 2513 37 100.0 32 ..................................... TAAGCCCGAACCAGATGAATTGGGCGAGTTGC 2582 37 100.0 34 ..................................... CAACGATTTCATTGATTCTAGTAATAGGAATTGC 2653 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 8 37 99.7 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTAATAGGGATTAATTTAAGTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGATATATGCAATCCACTATCGGAGATGTCCAGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACTGTCACGAGACTATCTTTGCCACCGGAGATTGAACAGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCTGCGACGCATACTAAAAAGGCATTTTTAAAGCTTTTAAATGGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCANNNNNNNNNNGGAGCAGGAGTATATTCAATGGCAGCGTATTGA # Right flank : CCCAGGGGACTCATTGCTATTTGAGCCCCCTTTCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGAAAAAGATGAGCCTATTTGTTCAAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGAATATCTATTCTCTGGGAAGCTGGATTTGGATGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 6 3369-3551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000102.1 Fischerella thermalis WC157 NODE_846_length_4204_cov_27.214796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3369 37 100.0 36 ..................................... GGTAAACGCGATCGCGACATCGAAATAACCATAATT 3442 37 100.0 36 ..................................... GGGATTTACTATAGATTGATTGATTTGCAGGAGATC 3515 37 91.9 0 ..................................NNN | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 97.3 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGAAAAAGATGAGCCTATTTGTTCAAAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGAATATCTATTCTCTGGGAAGCTGGATTTGGATGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCCCAAGGACGAACTTTGAATCGAGCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCCATTGCTATCATTTCTCAAATTTCTTCTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTTTCGCCCAGTGCCAAGCGACACCGGCAAGAATGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1687-1337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000081.1 Fischerella thermalis WC157 NODE_368_length_2116_cov_35.067108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 1686 37 100.0 35 ..................................... AAGAAGGGTTGGAGATACAACTCACAGCTACTCAG 1614 37 100.0 53 ..................................... TCAATTGTGCTGCTTCGTGCGATCGCTTAATGGACTGNNNNNNNNNNNNNNNN 1524 37 100.0 40 ..................................... CTTCCTGGGCTTTCCAGATGCCTCTTTTTGNNNNNNNNNN 1447 37 97.3 37 ....................................A ACTTACTAATTTCACACTCTACCTTAGCTCTAAGAAG 1373 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 5 37 99.5 42 TTGCAACTTCAATTAATCCCTATTAGGGATTGAAACT # Left flank : AGATAACCTCAATTCATCCCTCTATTATGCAACGCCAGGGATTGAAACGATTCTCACCGGACTAAGGTAAAGGAACAGCTAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATTCCTAATCTAATTCATTCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACCATTTCGAGGTGAGAGATGGACAACATGAGTTTTAGT # Right flank : CACCCAACTTAACAGACTCGATTTCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGTGGGGGTCGGAGGGGTCTACAATCTGCCGCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAATCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATACCCTGCGGGAAGCCGCTACGCGTCTACATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 19785-19970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19785 37 100.0 39 ..................................... TAGCCTAACCTTAAAGCTGGGATCAAACTTGGCGTGTTC 19861 37 100.0 36 ..................................... GCTCTTCTCCTTACACCACAAGGGTTTTCCGCCTCC 19934 37 86.5 0 ................................NNNNN | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 95.5 38 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAAGAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACGAGAGCGAGTCGAGATTTCGGGAAGGCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGGAGACTAAATCGAAGTTGAACGAGGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACGCAATGGCACAAATACTACTACGCCGACTCCGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACAGCATATATCGATGGGAGCGATCGCGATCTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.45 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 20165-20346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20165 37 100.0 37 ..................................... ACGCAATGGCACAAATACTACTACGCCGACTCCGACT 20239 37 100.0 34 ..................................... TACAGCATATATCGATGGGAGCGATCGCGATCTC 20310 37 97.3 0 ....................................N | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACGAGAGCGAGTCGAGATTTCGGGAAGGCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTAGCCTAACCTTAAAGCTGGGATCAAACTTGGCGTGTTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTCTTCTCCTTACACCACAAGGGTTTTCCGCCTCCGTTGAAATCAACTAAAATCCCTATCAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGGAGACTAAATCGAAGTTGAACGAGGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAGAGAAAGCTCCGAGTTATTGCTATCTTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTTATATCTTCTGGCGCTGCCGTGCCACCCCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTGTGATTCGAGGCAGCGACTGCCTGGAACTTTTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTATTGCCTCGATTTTCCACGGGAGGGGTCATTGGCAGAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 20531-20709 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 20531 37 100.0 33 ..................................... GCTTATATCTTCTGGCGCTGCCGTGCCACCCCA 20601 37 100.0 35 ..................................... GTGTGATTCGAGGCAGCGACTGCCTGGAACTTTTC 20673 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 34 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGGAGACTAAATCGAAGTTGAACGAGGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACGCAATGGCACAAATACTACTACGCCGACTCCGACTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACAGCATATATCGATGGGAGCGATCGCGATCTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAGAGAAAGCTCCGAGTTATTGCTATCTTGC # Right flank : CGGTATTGCCTCGATTTTCCACGGGAGGGGTCATTGGCAGAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGATAACTGGCGAGCCAGCCTGCCATACCCCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAGCAATGGGCATAGCCATAGGCTTATCCTGTACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAGCGGCGAGCGAGAGACCGAAGCTTGGGATCCGCTGCGATCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNTGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 4 21016-21497 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 21016 35 100.0 33 ................................... AGCAATGGGCATAGCCATAGGCTTATCCTGTAC 21084 35 100.0 41 ................................... AGCGGCGAGCGAGAGACCGAAGCTTGGGATCCGCTGCGATC 21160 35 100.0 43 ................................... ANNNNNNNNNNTGCCGCGATCGCGACACCACTTCTCCAATTTG 21238 35 100.0 41 ................................... NNNNNNNNNNCTTGGCGACAACCAGGGTGCTGCTTTGATTG 21314 35 100.0 39 ................................... ACTGGTATTGTTCTTCATTCCTTTTCATAATTCCTTTAA 21388 35 94.3 40 .................................NN NNNNNNNNGCACTCTCGCTAGCGACTTGCCTATTGAATCA 21463 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 7 35 99.2 40 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAA # Left flank : TTATTGCTATCTTGCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGCTTATATCTTCTGGCGCTGCCGTGCCACCCCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGTGTGATTCGAGGCAGCGACTGCCTGGAACTTTTCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGTATTGCCTCGATTTTCCACGGGAGGGGTCATTGGCAGAGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGATAACTGGCGAGCCAGCCTGCCATACCCCTA # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCACCTCATGGTAGACAGTTTCACCAGGAGCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCGCACCATCTTTAAGGATGGCTTTTCTTCCGCTAGAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCCAGCTAATTCCCTAGATGGGATGTAATAGTATTGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 21808-22356 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 21808 38 100.0 37 ...................................... CCGCACCATCTTTAAGGATGGCTTTTCTTCCGCTAGA 21883 38 100.0 36 ...................................... CCCAGCTAATTCCCTAGATGGGATGTAATAGTATTG 21957 38 100.0 32 ...................................... TTGATTTGATTCGGGTAAAACTCTTTACCGTC 22027 38 97.4 32 C..................................... ATGCTCCGAGGATGTTTACCCCAGCTTTTTCA 22097 38 100.0 34 ...................................... TATTTATGATAAATTTGCTGAATCTGGTGGGAAG 22169 38 94.7 40 ....................................NN NNNNNNNNTTCTCTCATCCACTCCACATCCAGGGCATCAA 22247 38 100.0 34 ...................................... CTAGCTAGCCACGACAGCAGTCCGAAAACCAAGG 22319 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 8 38 99.0 35 AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TGATTGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGGTATTGTTCTTCATTCCTTTTCATAATTCCTTTAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGNNNNNNNNNNGCACTCTCGCTAGCGACTTGCCTATTGAATCAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCACCTCATGGTAGACAGTTTCACCAGGAGC # Right flank : CACCGGAGGCGGTTTCGTTTTCCTTTAAGTAATCCCTCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAACGACGCACGCAAAGAAGAGATTGAGAAATTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTCCCAAGCTGAGGGGGAGCGAAGATTAACCAGTCTGAAGTTGAAATCAACTAAAATCCCTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 6 22758-23084 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 22758 37 100.0 38 ..................................... TCCCAAGCTGAGGGGGAGCGAAGATTAACCAGTCTGAA 22833 37 100.0 34 ..................................... GACGGGATTGGCTATAAAGAATGGAGACGCGCTA 22904 37 100.0 34 ..................................... CAATTGAAGATTGGCTTCACAGGTGCGATCGCTT 22975 37 100.0 36 ..................................... TACCAGGGAGAGACGGTCGTGACGGTAGACCAGGTT 23048 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 36 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : ACTAAAATCCCTATCAGGGATTGAAACCTAGCTAGCCACGACAGCAGTCCGAAAACCAAGGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACACCGGAGGCGGTTTCGTTTTCCTTTAAGTAATCCCTCGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAACGACGCACGCAAAGAAGAGATTGAGAAATT # Right flank : CTTTTTACCGCCTCAGCATAAGTTTGAGGATTCCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATGTTCCACTCTCCCTTCCCTATGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNGAGAATGGATCTTGCAGGGCTTTCTCTATTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCAAAAAAACTGAACCTTACCGTGCTTTTTTGTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGGACTGCTTCAAGAAATTCGCCCAAACTGTAGGGTTGAAAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 7 23350-23612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================= ================== 23350 39 94.9 41 AT..................................... NNNNNNNNNNGAGAATGGATCTTGCAGGGCTTTCTCTATTC 23430 39 100.0 33 ....................................... CCAAAAAAACTGAACCTTACCGTGCTTTTTTGT 23502 39 100.0 33 ....................................... AGGGACTGCTTCAAGAAATTCGCCCAAACTGTA 23574 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ========================================= ================== 4 39 98.7 36 GGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TCCCTATCAGGGATTGAAACGACGGGATTGGCTATAAAGAATGGAGACGCGCTAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCAATTGAAGATTGGCTTCACAGGTGCGATCGCTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTACCAGGGAGAGACGGTCGTGACGGTAGACCAGGTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTTTTTACCGCCTCAGCATAAGTTTGAGGATTCCACGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATGTTCCACTCTCCCTTCCCT # Right flank : CAACAAGGATGTCATAGCGATCGCGTCCGAAGTGTCCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATGAGGGGAAGGACACACCAGCCTCCGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGGCAATCCTGACTGCTTGTAAGTGGTGTAGGGACGAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACGAAACGCTTTATTAGACTTGTATGAAGAAGTTTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACTGAAGGATATACAGATCCCGTTGCACTTTTTAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGNNNNNNNNNNG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 8 23855-24034 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000108.1 Fischerella thermalis WC157 NODE_1072_length_42099_cov_49.680466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 23855 37 100.0 36 ..................................... GGCAATCCTGACTGCTTGTAAGTGGTGTAGGGACGA 23928 37 100.0 33 ..................................... GAAACGCTTTATTAGACTTGTATGAAGAAGTTT 23998 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GAAATCAACTAAAATCCCTATCAGGGATTGAAACNNNNNNNNNNGAGAATGGATCTTGCAGGGCTTTCTCTATTCGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACCCAAAAAAACTGAACCTTACCGTGCTTTTTTGTGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAGGGACTGCTTCAAGAAATTCGCCCAAACTGTAGGGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAACAACAAGGATGTCATAGCGATCGCGTCCGAAGTGTCCAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATGAGGGGAAGGACACACCAGCCTCC # Right flank : CTGAAGGATATACAGATCCCGTTGCACTTTTTAAGTTGAAATCAACTAAAATCCCTATCAGGGATTGNNNNNNNNNNGCACTTTTTATATAAACTTTAGTGTTTATACGTGTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAGTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 330-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000090.1 Fischerella thermalis WC157 NODE_457_length_7001_cov_40.654194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 329 35 97.1 37 N.................................. TTGGCGAATATCTACCATTCTATCGCGGGTGCATCGT 257 35 100.0 31 ................................... GGCTCAATTCAGAAGCCTTGCNNNNNNNNNN 191 35 100.0 45 ................................... GGATTCCCACTCCGAAGAAAGTTCTTAAGATTGAGGCNNNNNNNN 111 35 94.3 42 NN................................. CTGCTTCGGGAATTTCAAGGAGGCGATCGCCTACCTCGAAGT 34 34 97.1 0 ..................................- | ========== ====== ====== ====== =================================== ============================================= ================== 5 35 97.7 39 TTCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Left flank : ATAGGGATTAATTTAAGTTGCAACCAAAAAAGCAAACTCGCCTTGTTGTCAAGAAAAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACGATTTTGTTCAGAAGTTCCTCCGATTGGAGGAATNNNNNNNNNNAATCCCTAATAGGGATTAATTTAAGTTGCAACTCGATGTCGATGGCGTTGCGATCGCGAAGGGTGAAGTTTCAATCCCTAATAGGGATTAATTTAAGTTGCAACCCGTAGAACTGCCGGCAAGTGTAGCGATCGCGTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : A # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 588-1880 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000090.1 Fischerella thermalis WC157 NODE_457_length_7001_cov_40.654194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 588 37 100.0 35 ..................................... TTCACCCTTCGCGATCGCAACGCCATCGACATCGA 660 37 86.5 39 ................................NNNNN NNNNNATTCCTCCAATCGGAGGAACTTCTGAACAAAATC 736 37 100.0 33 ..................................... TTTTCTTGACAACAAGGCGAGTTTGCTTTTTTG 806 37 100.0 42 ..................................... ATTGTCGGTCTGCGCACCCGTCGGAGGAGGAGTTGGAACCTG 885 37 97.3 44 ....................................N NNNNNNNNNNNNNNNNNNTTCCTACGCCCAGAGAAAACTGCACA 966 37 100.0 41 ..................................... GAGGCGAGAGCGCAGGCATGAGAAGTCAGGAAGAAGATGAA 1044 37 100.0 34 ..................................... CGAGGACTTAGACCTGCCCTGGATGCACGAGACC 1115 37 94.6 38 ...................................NN NNNNNNNNGGGCGCGATCGCTACATAATATCGCGATAT 1190 37 94.6 44 ...................................NN NNNNNNNNGTACTTGTCGATGTCGATGATTTCGATGTCTGCGAG 1271 37 100.0 34 ..................................... CCCTATCGAGCAGAATATCTACAATCGGAGGGCT 1342 37 100.0 34 ..................................... ATTTCGATAATCAAGTGGATAAGGGATGTGTGGG 1413 37 100.0 34 ..................................... TTCGTCGCCGATGTAGCGCGGGCGATCGCACTAC 1484 37 94.6 37 ...................................NN NNNNNNNNTCATTCCGCATCCGGTGGATGAGCAATCG 1558 37 100.0 34 ..................................... CGCTACGATCTCCACGAACTGATGCCATCCGGGC 1629 37 100.0 37 ..................................... AGCCGTCGGTAAGATACCTAGCACCGTCACAGGAAAC 1703 37 100.0 33 ..................................... CAGAAGCACGAGTTCGTAGCCGCCGCCCATCGA 1773 37 100.0 34 ..................................... GAGGTTCAGGACGGCATAGTAGTCATTACACGCG 1844 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 98.2 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : AATTAATCCCTATTAGGGATTGNNNNNNNNNNGCCTCAATCTTAAGAACTTTCTTCGGAGTGGGAATCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGCAAGGCTTCTGAATTGAGCCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGATGCACCCGCGATAGAATGGTAGATATTCGCCAAGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGACGCGATCGCTACACTTGCCGGCAGTTCTACGG # Right flank : CTTTACTGCGGTGGGTAACTTAGCTGATTCCATCGTTGCAACTTAAATTAATCCCTATTAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACTCCCCGGCGTGAACGCACGGGGATTGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTGCCCACATGGGCGGCATCCCGGCTTCCCGCAGCCAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGTAAGGAGGGTGACCTAGATATTGAAATGCTGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTCTTCTCTGAAGAAGACAATTTGGTGTTCTGTCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGCCGAGAATATTTCTCAGCAACTAGCTCCGCCAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 2094-3164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000090.1 Fischerella thermalis WC157 NODE_457_length_7001_cov_40.654194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2094 37 100.0 36 ..................................... TGCCCACATGGGCGGCATCCCGGCTTCCCGCAGCCA 2167 37 100.0 33 ..................................... GTAAGGAGGGTGACCTAGATATTGAAATGCTGC 2237 37 100.0 34 ..................................... TTCTTCTCTGAAGAAGACAATTTGGTGTTCTGTC 2308 37 100.0 36 ..................................... GCCGAGAATATTTCTCAGCAACTAGCTCCGCCAAAG 2381 37 100.0 32 ..................................... ATGATCGCATCTATTTCACTTTTCCCATTTGC 2450 37 91.9 38 ..................................NNN NNNNNNNATCGGGCAGGTAAGCGGCTACATTGGCTCAT 2525 37 97.3 47 ....................................N NNNNNNNNNTTCTTGTTGTTCAAGAGTTATTCCGAAGCCGCTTGCAA 2609 37 91.9 39 ..................................NNN NNNNNNNAGAGAAACCTGCTCAAGATGATGAGGGGTTGG 2685 37 100.0 37 ..................................... AGTTGGAATGAGTATAAAAAATCATTTAAAAAAACAG 2759 37 100.0 36 ..................................... AAAGCTTTTGGCGACTACTAATCGGCTTTGTCAAAA 2832 37 100.0 37 ..................................... TTAAATGAATCTCGTAAATTCCTGGCGCTGGCAGCGT 2906 37 100.0 33 ..................................... AACTCTGGTATGAACAAATGCTGTAGTAGCTAT 2976 37 94.6 43 ...................................NN NNNNNNNNTCCATGGATGGGAAATACCCCTTCGTCTCGATGCA 3056 37 100.0 35 ..................................... ATTGATTAATACAGTGTAGCCATAAATATTCGCTA 3128 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 15 37 98.4 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCGCTACGATCTCCACGAACTGATGCCATCCGGGCGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAGCCGTCGGTAAGATACCTAGCACCGTCACAGGAAACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCAGAAGCACGAGTTCGTAGCCGCCGCCCATCGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACGAGGTTCAGGACGGCATAGTAGTCATTACACGCGGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTTACTGCGGTGGGTAACTTAGCTGATTCCATCGTTGCAACTTAAATTAATCCCTATTAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACTCCCCGGCGTGAACGCACGGGGATTG # Right flank : CTGGCAACAGCGAAATCATCGAACTGACCAATCTTGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATCAGTGCAACACTAGCGACTTTGGAGATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACCGAAACCACGATTACAACCAGCACGCCTCTGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 4 3706-4033 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000090.1 Fischerella thermalis WC157 NODE_457_length_7001_cov_40.654194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3706 37 100.0 41 ..................................... TGTCTAAGGCGTTTGGCGGCTTTTTTACTTATCTGGCTAAT 3784 37 100.0 33 ..................................... GATGAAATCTATACACGCAATTATCATTTTACC 3854 37 100.0 35 ..................................... TTTGTGTAGGTACACCGGATAGTACCCCAGATCCT 3926 37 100.0 34 ..................................... GACCTCCACGGTGTTGGCTAGGAAGTACATGGTA 3997 37 91.9 0 ..................................NNN | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 98.4 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATCAGTGCAACACTAGCGACTTTGGAGATTGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACACCGAAACCACGATTACAACCAGCACGCCTCTGTTGTTGCAACTTAAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAATCACGTAATTCACGTATCCGCGAATTG # Right flank : NNNNNNNNACGGCATATGGGAGGGGAGGTACCTAAAGAACTATTATACACTTTTAAAGACGGCACTAAGTCTTACCTAGGCGCGGAGATCCACCACTATAAACAATGGGCTAGGATAGATTTTGAGGACATCACCAGAAGGTTTAAGGAGGGTAAAATAACTTGGGAGCAAGCCAAAGAAGAAGCTAGGAAAGGTTTATTTAAAGAAAAGGTGGTATATAAAAAGACCGGAAAGATTAAAGAGGATTATCAGATAATCCCTCAGAGTATTAAAAATCGTAGTTATGTAATATTGGCTGGTGGGGTACATAGAGGAGGTGCTCCTTTATATAAGTACAGCCATCCTCTAATACCTGATGTGGAAAGCCCCACACCAAAGTTCAAATCTTATGGTATTCCTAAGAGAGGAAGGGCTGGACGTGAGTGGTATGAGAAAAACTTCCAAAATCCTTTCTGGCGTGAAGTGTATAAGAGAGAAGCCTATGTGATCCAGAACGAGAT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 5 5193-4933 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000090.1 Fischerella thermalis WC157 NODE_457_length_7001_cov_40.654194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 5192 34 100.0 44 .................................. ATCACAAAGTTGGTAGCCAAAGGCGCAGTTAGTANNNNNNNNNN 5114 34 100.0 39 .................................. TTGGATGAAGGGTGGGGCATTGCCAGCATCGGATTGGTT 5041 34 100.0 41 .................................. AGATTGCCCAAGGTATGCATCGTTGGCTCNNNNNNNNNNTT 4966 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================ ================== 4 34 100.0 42 TCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Left flank : AGAAGAAGCATATATCTAGGAAGTAGTTGCCTATTCGCCTTGGCGGGCGGAAGAAATAGAAGTAGGCCTGAAAACTGCATGAAAAAGTAGCGATTTGAAACGCAGAGGGACGCGGAGTCTTTGTGCAAACATTTCGCTATGAACTTACGAAATGCAATTATTTATGAAGATGTACAGAATATTAAAAAACAAACCGCCAAGAAGCCAAGAACGCCAAGAGTGGAGGGTTAGTCATTTGGTGCGGCTTCACATTAAATTGGTATTAGAGGCGATCGCGTTGTAGAGCATTTCATGTTTAACTCTTTCGCGCCCTCGTCCCCCACTGAATTCGGTACTCCGAATCAGTGGCGGGATATAAGGCGAAAGAGTTAACGGCAGATGAATTGCGACCAATATAAAACTGAGCGTAGCGAATCATTGTTTTGGTTGTTCTTGGTTCTCGACGTAATTTTTTAGTTACTCATTGTGAGTGGTTTGGTTACATCTAATGGATTTTTGTT # Right flank : AGTGTGCATAATCAGCTGACCTATTACATCGTATTAAACATGTCCCATAACATATTTTGATAATACAAGTTATCAAATAGATCTATATGGTACTCTGCGCCATCCTTCGTAACGATGGCATATTCTTGAGCATCCAGATAGTCGTCATCGGTTAGACCTTCGTCTAGCACCTCCATGTAGTCGATGTCTTCCATATCTATGGATATGTGTAGACCTTCTACAGTCACTAAGTGCATCAAGGTTGGGGACTCAAAAGTTTGAGTAGTCATGTTAGATACCTCATTTACTGTTCTTTAATGATAACCTACGTTGGTACTCTTTGTCAATCTTTGACTGAGCCTCCTTCCATAGGTTTTTGGCATCCTCTATAGATAACTCACCCTTCCGGATACGCCTATTGATCTCGTTCTGGATCACATAGGCTTCTCTCTTATACACTTCACGCCAGAAAGGATTTTGGAAGTTTTTCTCATACCACTCACGTCCAGCCCTTCCTCTCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATCCCTAATAGGGATTAATTTAAGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 362-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000095.1 Fischerella thermalis WC157 NODE_573_length_1096_cov_34.935219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 361 37 94.6 39 NN................................... TTTGTCAGTAGTTGGGTATCTACTCCCTAACATCTTTTC 285 37 100.0 36 ..................................... GATTCGCAAATCTTTTCTTCCTTCTGTAGATATCGG 212 37 100.0 34 ..................................... GATGCGGATGGAGCAGGAACATCTTCAGACCCGT 141 37 100.0 36 ..................................... CTATTTCTTCTTTCTCTGCGCTACTGCGTCCATCAA 68 37 89.2 0 .................................GGTG | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 96.8 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTACTGGGCGCAATTGGGATATTAATTTATCCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCTGCTCTTCAGCAGATTGCGAGGCANNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGGTAGCATGGATCTCACACACTTGAGAGCGCGATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGCCTCTACCCCTCCGCGAGCGTAGCGAGCCTGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGCAGATACAAGCCGCTACTCATTCTCTCTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTGCATAAATGCGGGATGAATTATGCAAATA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 708-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000095.1 Fischerella thermalis WC157 NODE_573_length_1096_cov_34.935219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 707 37 100.0 35 ..................................... TGCTGCTCTTCAGCAGATTGCGAGGCANNNNNNNN 635 37 94.6 37 NN................................... CCGGTAGCATGGATCTCACACACTTGAGAGCGCGATC 561 37 100.0 35 ..................................... GAGCCTCTACCCCTCCGCGAGCGTAGCGAGCCTGT 489 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.7 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGAGAATATCCCGGATCTTTTTTGCTCCTCGCTNNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGTCTGTAGCAAAAGAACTAGTGGATGGGTACAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATGTCGACAATCTTGGTAACAAAATCCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTACTGGGCGCAATTGGGATATTAATTTATCCG # Right flank : CCCGCAGATACAAGCCGCTACTCATTCTCTCTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTGTCAGTAGTTGGGTATCTACTCCCTAACATCTTTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATTCGCAAATCTTTTCTTCCTTCTGTAGATATCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGATGCGGATGGAGCAGGAACATCTTCAGACCCGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTATTTCTTCTTTCTCTGCGCTACTGCGTCCATCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGGGTGTTGCATAAATGCGGGATGAATTATGCAAATA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 1135-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000095.1 Fischerella thermalis WC157 NODE_573_length_1096_cov_34.935219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1134 36 100.0 43 .................................... AGAGAATATCCCGGATCTTTTTTGCTCCTCGCTNNNNNNNNNN 1055 36 100.0 36 .................................... GGTCTGTAGCAAAAGAACTAGTGGATGGGTACAAAG 983 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 3 36 100.0 40 TTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : ATGTCGACAATCTTGGTAACAAAATCCCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTACTGGGCGCAATTGGGATATTAATTTATCCGCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCTGCTCTTCAGCAGATTGCGAGGCANNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGGTAGCATGGATCTCACACACTTGAGAGCGCGATCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGCCTCTACCCCTCCGCGAGCGTAGCGAGCCTGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCGCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 2907-3103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2907 37 97.3 44 ....................................N NNNNNNNNNGGTCTCCTTTCATCATCTTTGTCTCCTCCAGTGTG 2988 37 100.0 42 ..................................... CGTGGGTGCGATCGCAAACAAAAAAGCCGGCTTAATAGCCGG 3067 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 3 37 99.1 44 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CCGACTCCCCTTTGACATTGAGCAGCGAAATCGAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATCTCGTGCCTGTGAGCGACGTATTGGGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCTCGCTGTGACGGCAAAGACCATATCCTCCAAATCACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTAGCTCTGAGTACCACTTTCCAGGGAAGTCACAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 2 3356-3538 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3356 37 100.0 39 ..................................... GCTCGCTGTGACGGCAAAGACCATATCCTCCAAATCACT 3432 37 100.0 33 ..................................... TAGCTCTGAGTACCACTTTCCAGGGAAGTCACA 3502 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 98.2 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGGTCTCCTTTCATCATCTTTGTCTCCTCCAGTGTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGTGGGTGCGATCGCAAACAAAAAAGCCGGCTTAATAGCCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGACTCCCCTTTGACATTGAGCAGCGAAATCGAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATCTCGTGCCTGTGAGCGACGTATTGGGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGGTGCTGACTGCCCAGGCTGTGCAGCAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATCGGAGTTGGCATCTCGGATCTATCGTGCTACTATAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 4134-4395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4134 37 100.0 37 ..................................... CACGGATAGGCTGGTAGAGATCCTTGAGGCGTGCATG 4208 37 100.0 36 ..................................... ATTCCGCTCCTCCGAGATGCCCTGAATCGGCGAGCA 4281 37 100.0 41 ..................................... GAGGTGGGGCTTGAGGAGAGCGACTAGCTCTTCCAGCACTC 4359 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGGTGCTGACTGCCCAGGCTGTGCAGCAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATCGGAGTTGGCATCTCGGATCTATCGTGCTACTATAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGTTGGTTGGCGGCTGACCGCCCCAGAGAGT # Right flank : CAATAGCTTGGTACGGGGTCTTGTTTAGCGCGAAGAGATCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCCCGCCTTATATGCATCATTGAGCATTGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGNNNNNNNNNNTACCCGCCGCCCCAGAGAAGATTCGTAGGTATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTGCCCAGAGGGGCGGCATCCCGGCTTCCCGCAGCGTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTACTAGGTAAAATTTCCTGTAGCTGTTGTGATGATGCCCGAGGTTGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 4736-5297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4736 37 100.0 38 ..................................... TGCCCAGAGGGGCGGCATCCCGGCTTCCCGCAGCGTTG 4811 37 100.0 42 ..................................... TACTAGGTAAAATTTCCTGTAGCTGTTGTGATGATGCCCGAG 4890 37 97.3 40 ....................................N NNNNNNNNNGATATCGCCATGTATCGGAATTCCTGGAAAG 4967 37 100.0 35 ..................................... ATCCCTCAGATGCGAGTCCTTAACCGTAGGATGGT 5039 37 100.0 36 ..................................... ATCAAGAGGTAGCGAATGTTCGCAGCACGGCAATAT 5112 37 94.6 40 ...................................NN NNNNNNNNGTGCCGAAAACCTGGGGCAGAAATGGGCTAGG 5189 37 100.0 35 ..................................... AGACTGGACTTTTATCGGTCGTTAAGTCCGGAACA 5261 37 94.6 0 ...................................NN | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.3 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : GATTGAAACATTCCGCTCCTCCGAGATGCCCTGAATCGGCGAGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGAGGTGGGGCTTGAGGAGAGCGACTAGCTCTTCCAGCACTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAATAGCTTGGTACGGGGTCTTGTTTAGCGCGAAGAGATCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCCCGCCTTATATGCATCATTGAGCATTGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGNNNNNNNNNNTACCCGCCGCCCCAGAGAAGATTCGTAGGTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCCACACCGGGAAGAATCCGCCGCCGATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTGCCCAGCTTTACAGGAATGTACACGCAATGGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNCCAGTATATCACCAGCGATCGCCATAAAACGTATAGTTACAACTTCAATTAATCCCTATTAGGGATTGAAACCAGATTCCTCCGGGCAGAGAAAACTGCACAGAACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTTCTATTAGGGAGCGATCGCTATTAGAGTGGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGTGAAGCGGATCCACTCGACCTTCCGAATCCTGTTCGGTTGCAACTTCAATTAATCCCTATTAGGGATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAANN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 5 5391-5801 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 5391 37 100.0 32 ..................................... TTGCCCAGCTTTACAGGAATGTACACGCAATG 5460 37 91.9 42 ..................................NNN NNNNNNNCCAGTATATCACCAGCGATCGCCATAAAACGTATA 5539 37 97.3 35 ...A................................. CAGATTCCTCCGGGCAGAGAAAACTGCACAGAACT 5611 37 100.0 35 ..................................... TTTTCTATTAGGGAGCGATCGCTATTAGAGTGGCA 5683 37 94.6 45 ...................................NN NNNNNNNNGTGAAGCGGATCCACTCGACCTTCCGAATCCTGTTCG 5765 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 6 37 97.3 38 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNGATATCGCCATGTATCGGAATTCCTGGAAAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCCCTCAGATGCGAGTCCTTAACCGTAGGATGGTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATCAAGAGGTAGCGAATGTTCGCAGCACGGCAATATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGTGCCGAAAACCTGGGGCAGAAATGGGCTAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGACTGGACTTTTATCGGTCGTTAAGTCCGGAACAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGTCCACACCGGGAAGAATCCGCCGCCGAT # Right flank : CCTCGTCCATGAGTACGAGCAGAGGGGAATCCGCCCCCTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGCGATCGCATCATTGATTGATTTAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGCTGCCCGGTGTAGGTATCCCGCTGGAACCACGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNAGTAGGAGAGTTTCTCGCATAAGTGAATCTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGCGATAGCTGTGATCCCCGCTTGGTCTATAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 6 6076-6260 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6076 36 100.0 36 .................................... CGGCTGCCCGGTGTAGGTATCCCGCTGGAACCACGA 6148 36 100.0 41 .................................... NNNNNNNNNNAGTAGGAGAGTTTCTCGCATAAGTGAATCTC 6225 36 97.2 0 ...................................N | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 99.1 39 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Left flank : CAGATTCCTCCGGGCAGAGAAAACTGCACAGAACTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACTTTTCTATTAGGGAGCGATCGCTATTAGAGTGGCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNGTGAAGCGGATCCACTCGACCTTCCGAATCCTGTTCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTCGTCCATGAGTACGAGCAGAGGGGAATCCGCCCCCTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGCGATCGCATCATTGATTGATTTAAA # Right flank : NNNNNNNNNNGCGATAGCTGTGATCCCCGCTTGGTCTATACGATGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCAAGCGATCGCCTTGTCGGGGGAAGCGGGTCGAGGCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCANNNNNNNNNNATTCGACTCGGCGGATTTCGAGATAAATCCGCGAGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCANNNNNNNNNNGCGATACCTGGGTTATCCAGCAGGGTGCTTCTGCTGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCCAACATAGCCATGGTGTCTAGGAAGTCATCGTGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 7 6572-6304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 6571 35 100.0 46 ................................... CAGCAGAAGCACCCTGCTGGATAACCCAGGTATCGCNNNNNNNNNN 6490 35 100.0 44 ................................... TCGCGGATTTATCTCGAAATCCGCCGAGTCGAATNNNNNNNNNN 6411 35 100.0 38 ................................... GCCTCGACCCGCTTCCCCCGACAAGGCGATCGCTTGGT 6338 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================== ================== 4 35 100.0 43 TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : AATAGGGATTAATTGAAGTTGCAACTTCCATACTACATCACTCCTATCCACGAAGTGCCCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCCGCGATCGCCACCATCGATTGTTAGAATTTGTTNNNNNNNNNNTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGACCTTGGCATCGATCGATATGGGCTTGGAGAGAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGTCTAAGACCCATCAGACCCAGAGTCGACTTAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACTTCAATTAATCCCTATTAGGGATTGAAACCACGATGACTTCCTAGACACCATGGCTATGTTGGGT # Right flank : ATCGTATAGACCAAGCGGGGATCACAGCTATCGCNNNNNNNNNNTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACGAGATTCACTTATGCGAGAAACTCTCCTACTNNNNNNNNNNTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACTCGTGGTTCCAGCGGGATACCTACACCGGGCAGCCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACTTTAAATCAATCAATGATGCGATCGCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACGAAGGGGGCGGATTCCCCTCTGCTCGTACTCATGGACG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 8 6975-7228 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6975 35 100.0 37 ................................... ACGGGCACTTCGTGGATAGGAGTGATGTAGTATGGAA 7047 35 100.0 36 ................................... ACATAGCTTGCCCTTCTATCTTCATAGTGCGGTAAC 7118 35 100.0 41 ................................... NNNNNNNNNNTTGCTTATCCTATAAGCGATTTCCTCGTCAG 7194 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 100.0 41 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Left flank : ATTAATTGAAGTTGCANNNNNNNNNNGCGATACCTGGGTTATCCAGCAGGGTGCTTCTGCTGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACCCAACATAGCCATGGTGTCTAGGAAGTCATCGTGGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAAGTCGACTCTGGGTCTGATGGGTCTTAGACGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACTCTCTCCAAGCCCATATCGATCGATGCCAAGGTCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAANNNNNNNNNNAACAAATTCTAACAATCGATGGTGGCGATCGCGG # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGATCGCACGCGCGATCGCGCTGCACACCGCCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGTCCATCCTTGGCGGTGCATAGGCATGGGTGCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNGCCAGCTTGTACCCATGCTACGAATTCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGGCGAGAAATTTCCCCCAGCGATGAACGTATTCGCAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCATTGGCACGCGATTTATCTAATAGGCGATCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTGCCTGGCGCGTGCCCGACGGTGGCTGCGATCGCGGGTGTTTCAATCCCTAATAGGGATTAATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 9 7327-7585 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7327 37 100.0 35 ..................................... AGTCCATCCTTGGCGGTGCATAGGCATGGGTGCGG 7399 37 91.9 36 ..................................NNN NNNNNNNGCCAGCTTGTACCCATGCTACGAATTCTT 7472 37 100.0 40 ..................................... AGGCGAGAAATTTCCCCCAGCGATGAACGTATTCGCAAAA 7549 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 98.0 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCAATCCCTAATAGGGATTAATTGAAGTTGCAACTCTCTCCAAGCCCATATCGATCGATGCCAAGGTCGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAANNNNNNNNNNAACAAATTCTAACAATCGATGGTGGCGATCGCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGGGCACTTCGTGGATAGGAGTGATGTAGTATGGAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATAGCTTGCCCTTCTATCTTCATAGTGCGGTAACGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTTGCTTATCCTATAAGCGATTTCCTCGTCAGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGATCGCACGCGCGATCGCGCTGCACACCGCCAA # Right flank : CCCATTGGCACGCGATTTATCTAATAGGCGATCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTGCCTGGCGCGTGCCCGACGGTGGCTGCGATCGCGGGTGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACNNNNNNNNNNGGACTTGGGCGATACTCGTGCCCACTCCTCCATGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACATTGGGCTAGATGGCTCTGGCATCTTGGTCAAGCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCTGAATGAGATGCTCTATATTAATCTCAGCCATTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNTTTTAGTTTCCCTGCTTTCTCCCATCGTCGCAAGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGTCTGGTCAGTCGGCGCTTTCTCCCTGCTAGCGGCAGGG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 10 7782-8260 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZV01000099.1 Fischerella thermalis WC157 NODE_781_length_8222_cov_38.928120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 7782 37 100.0 36 ..................................... ATTGGGCTAGATGGCTCTGGCATCTTGGTCAAGCAA 7855 37 100.0 35 ..................................... CTGAATGAGATGCTCTATATTAATCTCAGCCATTT 7927 37 97.3 44 ....................................N NNNNNNNNNTTTTAGTTTCCCTGCTTTCTCCCATCGTCGCAAGG 8008 37 100.0 39 ..................................... AGTCTGGTCAGTCGGCGCTTTCTCCCTGCTAGCGGCAGG 8084 37 100.0 34 ..................................... AGAATGATGGCTGTGACTCCAGTGACAAACCCAG 8155 37 100.0 34 ..................................... GGCAACCCAATCTGGCTGCTTGCTGACTCGCCGG 8226 35 94.6 0 ...................................-- | ========== ====== ====== ====== ===================================== ============================================ ================== 7 37 98.8 37 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNGCGATCGCACGCGCGATCGCGCTGCACACCGCCAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGTCCATCCTTGGCGGTGCATAGGCATGGGTGCGGGTTGCAACTTCAATTAATCCCTATTAGGGATTGANNNNNNNNNNGCCAGCTTGTACCCATGCTACGAATTCTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACAGGCGAGAAATTTCCCCCAGCGATGAACGTATTCGCAAAAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCCATTGGCACGCGATTTATCTAATAGGCGATCGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAANNNNNNNNNNTGCCTGGCGCGTGCCCGACGGTGGCTGCGATCGCGGGTGTTTCAATCCCTAATAGGGATTAATTGAAGTTGCAACNNNNNNNNNNGGACTTGGGCGATACTCGTGCCCACTCCTCCAT # Right flank : | # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //