Array 1 18301-18093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIA01000014.1 Halomonas sp. KX33721 c14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18300 28 100.0 32 ............................ TCAACCAGACTCGCCCGCCGCGACCTGATTAA 18240 28 100.0 32 ............................ ATCTTCGAATAGCTCGGTCGGCGTCGTATCTG 18180 28 100.0 32 ............................ ATTACCGCGCTGCATACACTCGCCAGCGCGTT 18120 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTCTAAAACAGCTAATGAGTGACGCATGGCTAACGGGGATGCGAGACCACGTTAGCGTAAGCGAAGTGCTGGCGGCACCCGACCATGCTAAGCAAATTAACGTGTCGAGGCGGCAGTTTAATACGGGCAGCCCCAGCCGTGCCAAACGCTATGCCAAGCGTCACAACATCACGGAAGCGGAAGCCAAACAGCTATACGCCAAAGTGGCAGACAAACGCATTGAGCTGCCCTTTGTGACGATCAATAGCCGCTCTACTCAGCAGCGCTTCAGCTTGTTTATTAAGCACAGCAAGCCTGCAGATAGCGAGGTTGGAGGAACATTCAACCATTATGGGTTAAGCCCCCAAGCGACGGTGCCGTGGTTTTGACCCTTTTTTTCATTGAAGTAATTGGCAACGAATAATCAACCACTTAGCGGTATCACTTTGAAAAGGGTGGTGCCGCTTTTTTCACTTAAAGCTCTTTAACAATCAGCACACTATATTTGATATGCTCTA # Right flank : TGCGCGTCGATATTGGTCTGGGCCTGCTGCTGGTTAGCMGKATTGTTTCGGCTAGGTCAAATACATCAACATCTTCTGTTTGGCAAAAATACAGACTACGATGCAGCTCTTGCAAAACCACAAGCTGTGCGCCTTTTTTAGCAGCATCACGAATGCCAGCAATCGACTTTGCCATATTTTGGCAGGCGTTATCACTGTTAGTTTGTTGCACTAAGGCAACGGTTAATTTTGCAGGGCTTGTCATTGTGCTGCTCCAGCTAAAAATCCACGAGGTAATTGCATGGTAATGCAATGTAAACTACCAAATTGTTCAATAATAGGTAGGCAATTAACGCCAATAATAGTGTGCGCTGGGTATGCTTTTTGAACTTGCGCTAGCGCCAGTGCGTCGTTGTCATCGTTATACGTCGGGACTAAAACCGTATTATTGATAATCAAGTAGTTTGCGTACGTTGCCGGTAAACGGGTGTTGTCATCATCAAACACTGGTTTTGGCCACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16564-16799 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIA01000018.1 Halomonas sp. KX33721 c18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 16564 33 100.0 33 ................................. GCTAAGGGGCGTGTGTTGCGCCGGGCCGATAAA 16630 33 100.0 35 ................................. GGGCCGCGTTAAGGGGGCTGGCAACTGACGGACAA 16698 33 100.0 36 ................................. CTAGACGATCCCGCTGGCTACGTGACCGACCTCTTT 16767 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TAGCACACTGAGGGCAATATCATGATGGTACTAGTCAGCTATGATGTCAGCACATCTTCAGAGGGCGGTGAAGGCAGGCTGCGGCGAGTAGCGAAAGCATGTCGAGATATAGGACAGCGGGTACAATTTTCTGTGTTTGAAATTGAAGTAGATCCCGATCAATGGGTACGCTTTCGTCAACGCTTGATCGACTTGATTGATGACGAGGTAGATAGCTTACGCTTCTACTTCTTAGGCCGAAATTGGAAAAACCGCATCGAACATATTGGCGCCAAGCCTGCCTTAGACATGAATGGCCCTTTAGTTTTCTAATGTTGCTCTTGTTTGCGAACCCCAATTGTCTTGCCAAACCCCGTCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAACAAAATTTTCGCTCACTCTTTTGCATCAAGCAAAAATCGGCTAATGCTCAGTGTTTCGCAGAAGCATGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACG # Right flank : ACTAGATACCGCAACAGGCCGCAAGGCTTATGCGTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIA01000019.1 Halomonas sp. KX33721 c19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 45 33 100.0 35 ................................. CAGGTGAACTCGGTGTTGGCTGCAGTATCCGTGAC 113 33 100.0 35 ................................. GGGGCCGCCCTTATTAACTCGCGTTTCTGTGGCGG 181 33 100.0 34 ................................. TGTACGTACTGGCTGTGGCTGTGCGAGTTGGGTG 248 33 100.0 34 ................................. GGCGACGGCAACAACTGGCAAGGCCTGGTGCCCG 315 33 97.0 33 .............T................... GTCAACACCACGCTAGGCGAAACCTGGGAAGAC 381 33 84.8 0 ....................CAT.AG....... | ========== ====== ====== ====== ================================= =================================== ================== 6 33 97.0 34 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : GATAGAAACATCGCAGGCATGGGCGGTGTCCAACACCAGGGGATG # Right flank : CTCGCTCCTTGCCCGTTGCTGCACATTATCCCTCGCGCCCGCTGCCCTTGGCAGCAGGCGCTTTTTTATACCGAACTACAAGCTGCTAGGATGTCACTCTGACCACTGAACCAAGCGAGCCAATATGTCTTCTGCCTTTGAACACACCCTTGCCGCTATTGATGCGCTCCATGCTCAAGACCCACGGCCAACCACTCTCGCAGATGGCACTTCTCAGCCACAAGAACTTATCTATGCCCAGCGTATGAGCCAGTGGCTAGAGCGACTGCAGGAGACGCCGAGCGAACTGTTGCGCATTGCCGTGCGCGCCCAGCATCTGCAGCGCTGGCAGCTGCCGCGAAGCGATTACCCAGAAGGCCGTATTGGCTACTTAACTTGGCGGCGGGACCAAAGTGCCCAGGCAGGCGATACCACGGCGGCACTCATGGAAGAAGCGGGCTATTCCCAAGAAGAGGCCAAACGCGTCGCCAGCATGATTCGCAAGCAAGGCTTGGGCCGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9591-9918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIA01000043.1 Halomonas sp. KX33721 c43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9591 28 100.0 32 ............................ TGCTCGGCCAGCTCTTTGCGCAGCTCTATATT 9651 28 100.0 32 ............................ TCATACATCGCCCTTGATCCGCTTAACACCGT 9711 28 100.0 32 ............................ TGCTCGAGCTCGTGCCACAGGTCGCCCTTTTT 9771 28 100.0 32 ............................ GAGGCGCTGACATGACCCACCAGCCCAAGGGC 9831 28 100.0 32 ............................ TCAGGCTCAGCGACCGGCAGAGCTGCTTGCTC 9891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TCGCGGCAGGTGACAAAGTCATCCATACCGTAAGAAGGGGCCGAGTGAACGATACCGGTACTGCCCACCTCAGACTCAACGTAATCCGCCAGATAGACCGGCGAGAGGCGGCCGTAGAACGGGTGGCGGAAGTTGATCAGATCAAGCTGTTTACCTTGTGTGGTAGCCACTACTTCACCCTGGAGACCAAAGCGCTCTAAGCAGCTCTCAACCAGCTCTTCGGCTAACAGCAGTAGGCGCTCGCCGGTGTCTACCAGCGCGTAGGTGAAATCGGGGTGAACATTCAGCGCCTGGTTGGCGGGAATGGTCCACGGCGTGGTGGTCCAGATCACCACGGCGGCGGGCTTGGCCAGCTCGCTTAAACCAAACGCAGCCGCCAGCTTGTCGGCGTCTGCCACGGGGAAGGCAACGTCGATGGCATCGGATTTTTTGTCGGCGTACTCGACTTCCGCTTCCGCCAAAGCCGAGCCGCAGTCAAAGCACCAGTTCACTGGCTGACG # Right flank : ATTGAAATATCCAAGAGTGAATGGGCTTTTCTCTTCATTGTGTCGCGGACCGTTGGGTGCGTGGCCGCGCATCAGAAATTCCGCAACTACTCCTTCTCCTCATCCTCATCCTCATCCTCTTCCCAGCGTTCGATGGCGCGTTTGTCGTCGGGGAGTCGCACCATATCGCCCACGTTGAGATTTTGGTGTGACTGAAAGCGGTGGCCGCGTTGGTCGAGAATGGCGGCCACGCTGCCAATGCTCACGGCATCTTCTTCGCGGTAGGCTTCTACTTTGACCCGCACAATGCGGCCTTGGTAACGGGCGGAAAGCACGGCACCTGGGTAGGGGGGGCGTGTGTTCGGGGTCGTCCTTGAAGAGGGCTGCTACGCTGGCGCTGCCGGGCTCGTCCCATTCAATGTGCTTGTGCATGGTGAGCGTCCTTACTATGGGTGAATAAAAATAAGAAGGCTCGTTAAGTGTAGTGTGCGTTGGCAGAACTCGGCCAATCTAATCAAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //