Array 1 757272-759290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013012.1 Flavobacterium columnare strain B185R chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================== ================== 757272 36 97.2 37 ......A............................. ATTATTTAAAAAGACATGATTAAATCGACGCTGGGCA T,TATAA [757273,757281] 757351 36 100.0 66 .................................... CTTGACTAAAAAAGCCATTGCAAGCGCTACAAGAGTTGTGGTTTGTTACACGAAGGTATTTTCGAG 757453 36 100.0 55 .................................... TACGYAATTTCGTTTGAGTTSACTACGATAGGTATTGATMTCWAGCACTATTGCT 757544 36 100.0 43 .................................... CGTCATCTTAAATATTGGCTGGATTGCACCATAGCAATCRGWG 757623 36 100.0 54 .................................... SATATGTAAAAYAAAAAGAGTATTGAATCGAAGTGGATTGCAGCACGCTARCTG 757713 36 100.0 35 .................................... ATTATTCAAGATTTGTGTTACATGGTGTAGTTAAA 757784 36 100.0 35 .................................... TTCATTGTCAAGGAATTTAGAAGCTTCTGTTCCTA 757855 36 100.0 67 .................................... ATATTATAAAGCAAAACTAATTGATTGATAAACTAGTTGTGGTTTGTTACACGAAGGTATTTTCGAG 757958 36 100.0 31 .................................... CGAAAGCTATGCTGCCATATAAACAGGATGG Deletion [758025] 758025 36 97.2 37 ...................................Y GATAACTTTTGAAATAATTTTTAATTTTATAACATTA 758098 36 97.2 0 ...................................A - Deletion [758132] 758113 36 58.3 52 AAGA.TAGAAA.CACG.T.................. CTCTACAAWRYMWWATACCTGAATTAACTCTAAACTGCAGTTGTGGTTTGTT 758220 36 100.0 32 .................................... AGAAATAAAGAAGAGATAGTAACAGAAACAAA Deletion [758288] 758288 36 100.0 64 .................................... GCATTTCAAGATAGTAGTATGAATTTAATCAGGTTGTGGTTTGTTACACGAAGGTATTTTCGAG 758388 36 100.0 59 .................................... CAACTTGCARSTTCAACAATACCAGACTATCAAGCCGAAATATCGTTAAAAACATATTA 758483 36 100.0 42 .................................... RCTATGATTTCTTCGAAGTACCGTRCGTGGGTCGTACTTGGG 758561 36 100.0 34 .................................... GATGCTGAAGAAAAACACAAAAAAGAACAAGAGA 758631 36 100.0 31 .................................... TTATAACCTTTTTACTATTTCATTTAGCTTA Deletion [758698] 758698 36 100.0 59 .................................... TAGATATAMARRTGCCATTGCAAGCGCTTTCGGTTGGATACTCAAAGCAACTTTTCGAG 758793 36 100.0 46 .................................... TAGCGTATAAGTAAAATTGACTAGATAGAAATAAGAGTCTGAAGGG 758875 36 100.0 32 .................................... CGACCGCAAACATACGATAGTTACTTTATCAG Deletion [758943] 758943 36 100.0 52 .................................... YAGTATAAATTCAATAAGAACTGACATTGACATACAGTAAGAGGTWSYTAAA 759031 36 100.0 43 .................................... GTRTACTAACAATTCTCATCTAAAAGACAACTATGACATMTAG 759110 36 100.0 30 .................................... ATGTTCTATCGGCGTAAAATAAGTTAGCAG Deletion [759176] 759176 36 100.0 43 .................................... RATGCTMTAATTGTCAGAATCACAYAAAAATGAKCAAGATGAG 759255 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================== ================== 26 36 98.1 43 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGAATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : TAGCTAACAGCTTAGTTCTTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1288183-1289516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013012.1 Flavobacterium columnare strain B185R chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 1288183 36 100.0 45 .................................... GCTACCTTCTAATGGATCAATTAAAAAAGCAAAGTTAGCCCTTAC 1288264 36 100.0 41 .................................... TCGCTTAGAGGTGTTAATGAAACGAACATAGTTGGCCCTTA 1288341 36 97.2 48 T................................... TACCCTATATACTGCGTAAATGACTATCAATACCTGTTAGTGTATTGA 1288425 36 100.0 43 .................................... GGTAAATAATTTATCTCTAGATTATAGTAATAGTTGGGCCTTA 1288504 36 91.7 46 T..T.A.............................. GCTATGCTCAAACTTATACAGATGCCAATACCTGTTACAACCAATC 1288586 36 100.0 45 .................................... TGGTAGTGCTTCCGTAATGATATAAATAGAACCTGTTAGCCCTTT 1288667 36 100.0 49 .................................... WGTGTCAGGTTTGTCGTGWTCATSTTGATAGACTCCAGCATCGCCCTTA 1288752 36 97.2 52 T................................... RTCWGCGAGGAATAAGTTCACCGTACGATATATAGAGGATTGACAATCMTTA 1288840 36 100.0 52 .................................... CTCCCTTAGAGTTTCTATACCAAACATTTGCCGAGTTAGGCGATAACAAATC 1288928 36 100.0 43 .................................... AGTGCGGAAAGCCCGGCTTTAYCAATACCTGGAACGCCCAAAC 1289007 36 100.0 42 .................................... ACCCTTAGAGGTAGACATCCATCCTCTACCTCTAAACGTAAA 1289085 36 100.0 41 .................................... CCAATGAAGAAGTTTATTTAGAAAMWACCTGTTACCAAAGA 1289162 36 100.0 46 .................................... TCAATCTCAAAGTWYCACCGTATCACACTATGATAAACCTSAGGCW 1289244 36 100.0 51 .................................... ACCCTTAGAATCGTTCTGAGCTTTGGCCGACCATCTATCTTTGTGAKATTT 1289331 36 100.0 48 .................................... CGTTGATCGAACGTTTATCTCTTTTTATAATGCCCTGTTAGCCCTAGA 1289415 36 100.0 30 .................................... CATATTCTTCTTCAAAGTGATGTTTGTAAT Deletion [1289481] 1289481 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 17 36 99.2 45 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : GAGTACGCAAATACATCCAGCCGATTTTGAAAGAGAGGGCAATCCAAATTTTAAAAAATATTTAGCCCATTCTATTTTAGAAAACGAAGATGATCTTGATAAACTGCCTGAAAAAGCAGAAGCAATGAGGGAACTGGATGAAACAATTACTAATCCAATCATTAAAAAAGCGATTGTGTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTATAAAGAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : CTTCTACCCTTAGAATCTTCACCGTACCAATACCTGTTAGCCCTTATTTTGAAGGAGGGACGAGCGTTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGTGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTCCTCCTTTGGTCAAAATGCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATAATTTTTTGTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //