Array 1 3269932-3268881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035738.1 Enterobacter cloacae strain CZ-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3269931 28 100.0 32 ............................ GTCTGCATTCCCTTTTTTATTAACCACTTACA 3269871 28 100.0 33 ............................ TCGCCGATATTCCCGACAGTGCGCTCGCTGGGA 3269810 28 100.0 32 ............................ TGTCGGTGATTTCCCAGATGCGTGCCTTCTCG 3269750 28 100.0 32 ............................ ACAGCTGTTGCCGCGTGAGTCTGTGCTGCTTT 3269690 28 100.0 32 ............................ TTAAACCGCTGGCAATCTCTGTTAATGCTTTA 3269630 28 100.0 32 ............................ TTTAAGACGCTGCGATTTCGAGACTTCTTTTT 3269570 28 100.0 32 ............................ ATAATTCAATCAATGCAATTCCATAGACATGG 3269510 28 100.0 32 ............................ ATTGGCTGTTCAAAAGCGGCTAAAACTTCACT 3269450 28 100.0 32 ............................ TTTCTGTCAGTTGCCGTTACTGATAATGAAAC 3269390 28 100.0 32 ............................ ACATCGTCATCTGCCAGGGCAGTATCAATAAC 3269330 28 100.0 32 ............................ AGGGTGCGAGCCGCTGCAGCTGGCGACTGAGA 3269270 28 100.0 32 ............................ TACGGAAATTCGATTGTAATACCACAAGCGAC 3269210 28 100.0 32 ............................ TGCTTGTTCATCTGGTTTACCCAGGCTGTTTT 3269150 28 100.0 33 ............................ ATCGTAAGCAACCCAACCAAGTTTTTTCCCATT 3269089 28 100.0 32 ............................ GAACGGAGGGCGCTGATATGGGGTTTCCGTCA 3269029 28 100.0 32 ............................ GACGTTGGGCGGAATACTTCCAAAATTATAAA 3268969 28 100.0 32 ............................ AGGGAGATGGACAACCATCATCACAGGAGAAA 3268909 28 82.1 0 .C.......T.C.A.T............ | C [3268884] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGAAACGTGCCACACGCTCGCTCTCATCGGGCGTCAGCGTTCGACCCGTGCTTTTGCGGCGGGCAACGTTACGCTCGTTAATTCCTGTGACACGGAGAATGTCCGCTTTCGACATTGCCGTCCATTCATGGATATTGTCGATAACGCTGACGGGTAACCCCTGATTGAGATATTCAACCAGCCGCATACCTCTGTTTGCAGGTAAACCGGCGTAGCGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATATTACCTCCTGAGTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCTGGTGGAGTAAAATGAGTGTTTTGTTTGCAGGGGAAAGAGAAGAGCGGCATTTGACCTTTATTTTTAGCGTATTTGTAATGTATTGATTTTAAATGGATAATTTGGTGGGGTAAAAAAGAGGGTAAGAGAAGGTTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTATGGGGGTATTATTCCA # Right flank : ATAGAAAATAAGGTCTCCCCCTTACTCTCTGCACTGTCGAACTGACAGCCCTAAAGCAGAAACAAAGCCCAAATAATCAACTGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3280013-3279384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035738.1 Enterobacter cloacae strain CZ-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3280012 28 100.0 32 ............................ GCGCCGCCTGTTCGTAGGCGTGAGAGGCATTT 3279952 28 100.0 32 ............................ CACTGATTCCACGTTCTAGCGGTGTTCAGGCC 3279892 28 100.0 32 ............................ AAAAGCAGCAACTACCAAGCCCGAAAAACAGC 3279832 28 100.0 32 ............................ GAGTGTTTGCGCTCAGCGCTGAACGCCAGGAA 3279772 28 100.0 32 ............................ TGAATACACACTGCATCGTAATCAAGCGCCCT 3279712 28 100.0 32 ............................ TACATGCAGGCGCTTTATGTTGCCGCAAACTC 3279652 28 100.0 32 ............................ GGATGCTGAGAGCTACTTCGGTAAGCTCACGA 3279592 28 100.0 32 ............................ ATGACGAAGAAAAAACATCATCAACAGAAATA 3279532 28 100.0 32 ............................ TGTTGAGACTGCGACAATGCAACTTGCAATGC 3279472 28 100.0 33 ............................ ATATTAAGAGCTGAAAACTACCACCAGAAACGG 3279411 28 75.0 0 .................T...AC.TTTC | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACTCCCACAAACGCAGCCTGTTTGCCGTTGTCTTGGAGCCTGGCTGGAAGAAGTAAAAACAGGGCTCGCAGAATCAATGCGGGATTTTCAGGTCGTAGAATATGAAGAGGAAACAGACCAACCTCGTCATAAAGAGTGGCTTCTGGAAGATACCGAAACCAAGTGCGATTACTGCAGGGCATTAAACCATGTATTGCTGGTATCGCATTTTGACCGCGATATGCTGCCGCACCTCACGGGGCTCCTTCATGACATTACGTATTCAATGGCAGCAGATGTGGTCACACCTCAAAGTGCAGAAAAGGTAATCCATATTATTTCCTGACGACTGTTTGAGGCGTGGAGGACTCTCCTGACGCCAAATGTGTAACCCTTTTTTTTGCCGATTACGTAACATATTGATTTATAAAACATGTATTTATCGTGTAGAAAAAAGGGTTTAATGTACGAAAGTTGATTTTTTTCTTTTCTAACAATAAGATGCTGTGGTTTCCCTTCA # Right flank : ACATATTTAAAATAAACCATCCCAAATATTCATAATAATTATGAATTAAAGCATTCATCGCTGAATTATATTCCCATGCATATATTATTTGTAAAAATAATGCGTTAAGTAAGAGCGTTATTTCCCATCTCATTACTACGGCAGTTGGTGTTCATTTGATAGTTGTCACATTTTTACCCATCTCATTTTCGATAACATACTCCGTATCCAACACATTGAAATAAAAACCCTTGCCATGTCCATAAACAACATCACGCCGACAGAGTTAAAAACCATCCTTCATTCTAAACGTGCCAGCATTTATTACCTGGAGAAATGTCGCATTCAGGTAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGTAAGGAATCATTTTACTGGAATATTCCGATCGCCAATACGACTGCGGTAATGTTGGGAATGGGCACTTCCGTTACACAAATGGCAATGCGGGAGTTTGCACGAGCAGGTGTGATGGTTGGTTTTTGTGGAACGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //