Array 1 40518-39392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXV010000003.1 Escherichia coli strain 18-47-40 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40517 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40456 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40395 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40334 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40273 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40212 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40151 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40090 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40029 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39968 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39907 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGTAATCCGT 39846 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39785 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39724 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39664 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39603 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39542 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39481 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39420 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 56841-56019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXV010000003.1 Escherichia coli strain 18-47-40 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56840 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 56779 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 56718 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 56657 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 56596 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 56535 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 56474 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 56413 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 56352 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 56291 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56230 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56169 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56108 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56047 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //