Array 1 586201-588219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065991.1 Haemophilus parainfluenzae strain FDAARGOS_1000 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 586201 36 91.7 30 ..AA..A............................. GGCGTTATCTACCGGAACAGGCAAACAAGA 586267 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 586333 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 586399 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 586465 36 100.0 30 .................................... TCACGGCGACTTATCATGGGCAATTATGAA 586531 36 100.0 30 .................................... GCCTAATCGAGCAAATTGACAGCCACGCGG 586597 36 100.0 30 .................................... TTTTTGCGTTCCCAAGTCTGGACGACTTGA 586663 36 100.0 30 .................................... GCTTACGTAATTTTTTAATATCGCCTTTCA 586729 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 586795 36 100.0 30 .................................... ATAGAGCTAAAGGCCTCAATGGAGTTTTTC 586861 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 586927 36 100.0 30 .................................... GTTATGTCTGGCGTATTGTGGCAACAAAAT 586993 36 100.0 30 .................................... CCACATCGGCACAGAATAACGTGCAGTTTC 587059 36 100.0 30 .................................... GCAATCCGTTGAAGTGCAAGGCGAGTTTAT 587125 36 100.0 30 .................................... TGTTTCAACGCTTCATTCAAAACAGTAAAA 587191 36 100.0 30 .................................... CAGGAGGCAAACGATACTTACTCAAATCTT 587257 36 100.0 30 .................................... GCAAGTTGAGTTATACAATGTCTATGCCGG 587323 36 100.0 30 .................................... TGAACAAAACGCAATGATCGAGCTTTGGGA 587389 36 100.0 30 .................................... GAGGTGAAAATGGAAGTGCACATTAATGGG 587455 36 100.0 30 .................................... CCGTTTTTCAGCGTTCTGCCTTTCGTCATT 587521 36 100.0 30 .................................... AATTAGGAATAAGTTTCGCACTCATATCTG 587587 36 100.0 30 .................................... CATGGTTCAAAACATTTGACATAGCAATTT 587653 36 100.0 30 .................................... TTTATTTCGGTCATACACTGACAACATCTG 587719 36 100.0 30 .................................... ATCTTAACTTTAAATACTTTAGAGCAAGCA 587785 36 100.0 31 .................................... TTTTATTAGCGTTAATTGCTATGCGTATTTA 587852 36 100.0 31 .................................... TTATCAACGCTCGGGAATCCACCAAAATTGA 587919 36 100.0 30 .................................... TGTTTGGATTGAGCAGATAACAAGGCTTGA 587985 36 100.0 30 .................................... AGATTTTGAGATTGCTCCCGGTGCAATCAT 588051 36 100.0 31 .................................... TTGGCCGTTCTCTCTTGATTTATCTTCGCTT 588118 36 100.0 30 .................................... GGATTGAATAGCCTTATTTTCATCTACCAC 588184 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GTCTTACTATTGGTGAAGTAAAAGATGATGAATTCTGCGTGAATTTAATCCCTGAAACTTTACACCGAACCTTGATCGGTAAACGCCAAATTGGCGATTTAGTAAATATTGAAATCGATCCGCAAACGCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATATTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTAATGGTGTAATATGGAATGTACTTTTAGGTATTGCATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGTATCAGAAACAGATGCGAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT # Right flank : TAGGGACGGCAAAAAGCCCCATACCGCAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCGTTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGAGCCCTCTTCAGGTAAGTGTGCGACGAGCCTTTTATGATGTTTTTCTAAAGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTTGCACTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //