Array 1 17090-9909 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000019.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================== ================== 17089 32 100.0 39 ................................ CGGGGCCAGGGCGACGACGACTTCGTCGCTCTTCGCGCC 17018 32 100.0 35 ................................ TAGTCCACCCCACCATCACCGGCACACTTTGCGCC 16951 32 100.0 34 ................................ TGCGCCGACGACGCCGGATGCGCTCGGCTTTAGG 16885 32 100.0 33 ................................ CGGGTCAATGCGGAAGCTGGTGTCCTTGGTGCG 16820 32 100.0 34 ................................ CTGAGCAAGGGAGGCGAGGGCGATTTTCGGTCCT 16754 32 100.0 35 ................................ GCTGTTCGGAAGAGCGTAGGGCGTGCCGTTGATGG 16687 32 100.0 34 ................................ CGTACAGTTCAAACTTTGCCGTCCCGCCGATAGT 16621 32 100.0 33 ................................ GGAAACATCACCCAGCAACCCGGAGAATCAGCC 16556 32 100.0 36 ................................ CATGGCTACCTCCTACAGTTTTTGTCGGTCTCTGGC 16488 32 100.0 35 ................................ GGCGCGCCCGTCACCGCTTACGATGGCGTGGCAGG 16421 32 100.0 36 ................................ TTTTACCGCCGCAGAAAGGGCAGAACCGCATGAGGT 16353 32 100.0 36 ................................ CCAAATCTCCATTATCGATATTTGCAACGGAAACCC 16285 32 100.0 34 ................................ TGCCCGAATGTTTGCGCCTGGATGTCTGTCATAA 16219 32 100.0 32 ................................ GCGCCCCGGTGCCGGGGTCGTAGGTTCCGATG 16155 32 100.0 35 ................................ CGGTGTGACCGTCTTCGTCAGGGCAACCAGCGCCG 16088 32 100.0 36 ................................ GACATTGCCGGTAAGTTCTCCGACGCCGAATGGAGT 16020 32 100.0 37 ................................ CATGGCTTCCTCCTTAAATGTTCACGACGGTATTGGC 15951 32 100.0 35 ................................ TGTCAGATCCCTGGTGGTCTTCAAGTCGGAAAACC 15884 32 100.0 35 ................................ TGTTGGAGCACGGCAATTTTTTCTTCTGCCGTAGG 15817 32 100.0 36 ................................ ACCTGTCGCCCATCCCGCGTCTCCAGTTCCACGCGG 15749 32 100.0 35 ................................ ATGCTGTACATGGTCAGGCGGCGGGCGTTGATGTC 15682 32 100.0 34 ................................ CACTGCTTGCAAATTGTGCACCATTTCAAACCAC 15616 32 100.0 34 ................................ CACTGCGTCCGCGCCGTAGTTCGCGATCCGCACC 15550 32 100.0 34 ................................ GCGTAGGGCGGAGATGAATCCTGTCGGCGGCGTT 15484 32 100.0 34 ................................ AGGAGGATGGAAACCGCGGCATCGCCGTAAGGTC 15418 32 100.0 35 ................................ CGGTTGACACGGTAAGACTTGCACTCAGGACGTTT 15351 32 100.0 35 ................................ CCTGCGCTCCCAGCGCATAACGAAGGTGGCAGAAA 15284 32 100.0 36 ................................ GACAATTTCACAATGCGCCCTGGTACAGAAAAGGCG 15216 32 100.0 34 ................................ CTTTGCCGTGTCTAATACCTGGTTGAAGTTCTGC 15150 32 100.0 35 ................................ TACGCCAGCCGCCATTTCCCTGCTCAACCTGTATC 15083 32 100.0 36 ................................ CTCCCCGGTGAACCCCGCCTTAATCACTACGTCCAC 15015 32 100.0 33 ................................ CAGTGCTTGACTTTGATCTCATGGACGAATTGA 14950 32 100.0 34 ................................ CTATTCTCCGCGAGAAAGAAGATAAAAACGTGTG 14884 32 100.0 33 ................................ AAAAACAAACCGCAAAGGGCCTGGAAAAGTACG 14819 32 100.0 36 ................................ TCCGGCGGCGAACTGCTTATCGACAGAATCTTGGGC 14751 32 100.0 35 ................................ CGTAGATCTCGAATTTCGCTGTACCGCCTTTGGTG 14684 32 100.0 34 ................................ AAGATGTTTCAGGAGCAGATCAACGGCGGTCTGC 14618 32 100.0 35 ................................ TTAAACAGGTCGCGGGCGATGGCTTCGACGTAGGC 14551 32 100.0 34 ................................ CCCTCTGCTTCCCCCTCCACTTCGCCACCTGCCC 14485 32 100.0 33 ................................ CGCCGCGATCTCCCACGTTTCGGCTGGCGTGGC 14420 32 100.0 35 ................................ TTTAGCGTTTCCTGCGTGGCCCCCTGGAGCGCACC 14353 32 100.0 34 ................................ CCCTACATCAACAACGGTCAAGTCACATCCGCCA 14287 32 100.0 33 ................................ TTGTCTGGTTGACGTTTGCCGTCCGCTCGGCAA 14222 32 100.0 36 ................................ CTGACGGCATCCTGATAGCGTTTCAATCGCCGCTCC 14154 32 100.0 37 ................................ CGCCACCTTGTCTATGGCATCGGACACGTCGCCAAGC 14085 32 100.0 34 ................................ CGTAGTCCATGGCAACGTGGTAGGAGTCGAACGG 14019 32 100.0 35 ................................ TTCTACTGCGCGAAGGCTTCACAGTCTGAGCGCAA 13952 32 100.0 34 ................................ CTCAGCCCGCCGGATCTGGCTGTCATCGACCACA 13886 32 100.0 36 ................................ GCCGTTTGCGCTATCTATGACAGCGCTGACATCGCC 13818 32 100.0 34 ................................ TGCTTCGGTTGTGGCTGTTACTCTGCCTTGGTTG 13752 32 100.0 35 ................................ TGGTCCAGGGTCATGCCGTATTTTTCGAGTCCCTT 13685 32 100.0 34 ................................ CGACAGGGTATCCGTGTTTTTTGATCACTTCCTG 13619 32 100.0 33 ................................ ATCGACAACGCCGAAAGCGTGACGCGGTTGCCC 13554 32 100.0 33 ................................ CCGAAGGAAGCGGCCTACTACGCAATCATCGAC 13489 32 100.0 33 ................................ TGGCAATGGGTAGCATCATGGGCCTGCGTCTTT 13424 32 100.0 34 ................................ GCGCTGGCTCAACGCGCCGCGCAACTCCTGGCCC 13358 32 100.0 34 ................................ CTGTAGTAATCGCACTCCTCGCCCACGCAGACTT 13292 32 100.0 34 ................................ AAGAGCGAATCAGCGCCCGCCGAGACACCGTCCA 13226 32 100.0 35 ................................ TCGTTCCACGCTTTTTCGCCAACCTGCGGCGTCCA 13159 32 100.0 34 ................................ ACAAAGCGAACGCAACCACGGACTGAACGGCAGC 13093 32 100.0 34 ................................ ACTGTGTACGTCAACAGTGCTCTTTTGGCCCGGT 13027 32 100.0 34 ................................ GGCGGTGATCATCGCGGCCTGCTCCCTGCGAGTG 12961 32 100.0 34 ................................ CAACGTCAGTTTCCGCAGTGACATCTGATTGATT 12895 32 100.0 35 ................................ GGGGTTTTTGATTATACCCAGCCCGGTCCTTAGCC 12828 32 100.0 35 ................................ CAGCGAGGTTGCGGAAGTGGCGACTGTTGGCGCGG 12761 32 100.0 34 ................................ AGCTTGATCGGGGTAGTCACACAAACAGATATGC 12695 32 100.0 35 ................................ CTTACGAACTCAAAAAGAAAAGTCACCTTTCGGTG 12628 32 100.0 34 ................................ ATTGATTATTAATGGATATAATTTCCATGAAGGG 12562 32 100.0 34 ................................ CACCATAAACATTTCTTATAGCCAAACACCCATT 12496 32 100.0 33 ................................ AGCGTTGCAAATAACAATCTCGTTATAATCGGC 12431 32 100.0 35 ................................ TTTTTGTTCTGTTTTAACCTGCCTCATCAGTGTAG 12364 32 100.0 33 ................................ CCTGATGCCGTTTTGCCTGTATAGTTTCCAACG 12299 32 100.0 35 ................................ TCCCGTTCCAGACTATCCTAAATCAGACCTTTATT 12232 32 100.0 34 ................................ TGTGGAAACAATGTGTCCTAATTATTTCCGCATC 12166 32 100.0 35 ................................ TATAGCTTTAGAGGTTTTCCAAATGATGACGTTGC 12099 32 100.0 35 ................................ GAGGACTGGTCCCGGAACATCGCCGCTCTGTCTCA 12032 32 100.0 34 ................................ TATTTCTTTTATTTTTTACTTCTCAACACTTGCA 11966 32 100.0 34 ................................ CTTAATGGTCCGGGAAGGCAGAAAGACTGTCGAC 11900 32 100.0 34 ................................ TGGACGACGAGGAGGAGAATTACTGGACATTCGA 11834 32 100.0 37 ................................ AGAGGTTGAGGATTAAAAAATAAAGGGGTGTTTTAGG 11765 32 100.0 34 ................................ TTTTATAATCTAACTATTTCCGTATATACTCCAT 11699 32 100.0 35 ................................ GGTGGTAATCGCCTCCGGGTTGACCTTGTCGTAAG 11632 32 100.0 37 ................................ GCCCAGACCACGAATGACCAGGTCGTCGACGGTGATC 11563 32 100.0 35 ................................ TGCCGCTGCTGAGTTATTGTAGCAAGTTCGAAATG 11496 32 100.0 34 ................................ AGGCTGTAGGTTGTCATCCTATCAGCGACAGAGG 11430 32 100.0 35 ................................ AAATGATTGGGGAATTCTGCTATATTCCGAAAAGC 11363 32 100.0 34 ................................ GTCGCGTCCAGACCGGTCTCGACAGGGTAGCGGT 11297 32 100.0 37 ................................ TTGCCGATGCAATACGTCAGCGTTCTGCTGGCATTAC 11228 32 100.0 34 ................................ GGGTGAGTTCCGATAGAAGGAGGACGAAGGGTGA 11162 32 100.0 35 ................................ TGGCGCCTGCCGACAGGGTGGCTGAGATCCTCCAA 11095 32 100.0 34 ................................ TCGGCATAGACCTTTTTCAGTTCGGCTGCTTTGC 11029 32 100.0 33 ................................ AGGCGCCCGATGTAGGTAAGGGCTGGCGATTGG 10964 32 100.0 35 ................................ TTTTCGGCGTCCTCTCCGGCAGCGGTAACGCGCTG 10897 32 100.0 34 ................................ CGCCACGCACCCATTCAAGCATCCGGTCTTTTGC 10831 32 100.0 33 ................................ TCTAATGCCACATATAAACAACCGTTCTCTTGT 10766 32 100.0 35 ................................ TATCTCGGCTTGGCCGATGACGAGCACGACCGCGA 10699 32 100.0 34 ................................ ACCGGTTGCCTTATGAACGGTGATGCATTTGCCT 10633 32 100.0 35 ................................ ATCGTGCGCTGGCCAGGAACGCCGGCAAATCCAGC 10566 32 100.0 35 ................................ GTGATGTTGATTCCCGGCTTCACGTCTACTTGGCT 10499 32 100.0 34 ................................ TCTGGAAGCAGAAGGAGCGCCTGTGTTTAGAGGC 10433 32 100.0 35 ................................ CATAGCCCAGCAGGTGGATTGTTCCATGCTCGATC 10366 32 100.0 34 ................................ ATGGAATATCTATCACCGGGTAAGAACAGACGTT 10300 32 100.0 33 ................................ GCATTTAACCCCATCTTGGATAACTCCGTTTTG 10235 32 100.0 34 ................................ CTTCCCTCACTTCCCATCAACAATTAAACTTTAT 10169 32 100.0 34 ................................ CGCCACCCTCGTACACCAGATCGATACTGCCGCC 10103 32 100.0 34 ................................ CCGATCGTGCAAAAAACGACACCGATCCGAGATT 10037 32 100.0 66 ................................ CAGTTCCGGCCGGACATGGCCCCACAACGAAATGATAGGCCACCATACTGAATCGGGAATACCATA 9939 31 75.0 0 ..........AC...T..C....CA.-.T... | ========== ====== ====== ====== ================================ ================================================================== ================== 108 32 99.8 35 GTCGCACCCCGTGCGGGTGCGTGGGTTGAAAC # Left flank : CTTTGTGTGGCGATAGAGATAGGGGTGAATGCTTATGATGGTGCTTATCACCTATGATGTCGATACGACGGATTCAGCCGGTCAAAAAAGGCTTCGCCAAATTGCCAAGCAATGTGTCAACTACGGGCAACGGGTGCAAAAATCCGTATTCGAGTGCCTGCTGGATCCTGAACAGTATGTTCAGTTGCGTCACCGTTTGGAGCAAATCATGGATCCGGAAACGGACAGCATACGGTTTTATATGCTGGGAACTAACTGGAAAAAGCGAGTTGACCATGTTGGGGCCCATTCATCGTATGATCCCGAAGGTCCGATGATCATCTGATTACGAAACGCGAACGTAAAGTGATCATAAAAACCCGGTAGGTTCGCGATCGTGATCTGACAGGGGTTGGATACCGATTCTGTCATTTCAGGCACGTGTTTCTAGAACGCCGCACAATGGTTTCGCGGAAATGTGTTTCGTAAAGGGCTAGGGATTAGGTTTTTTGCTGTATAGC # Right flank : ACCTTTAGAGAAAATATATCGAATCGTAACGGTTCCATGGGGGCGCCCGTTTTTTATTTCTGTCGAGACTTCAATCCGGCCTACAAGGGACGTCACGATTTGGCGCCGAGTTTCAAAGGTGTCGTCTTTGGCCAGTTTGTCTCGCAATGCCTTGAGCAGTTGTTCGGCTGAAGCAAATCGAGATAAGAGGTTATCCTCAGAAGCAATCGCAACGAGCTTGTCTAACTCTTTGAGGCGTTGCCGGAGGTATTCCGTTTCCTGGGCGATCTTCGAAAGTTGCTTCTCTACGTCTGACGACGAGATAATATTGCGGCGGTACAAATCCAGAATCGGTTGTTTTTCTTGGTCCTTTGCGAATATAGCTTGTTCGATCATTAACTTCTCGTCAGAGTATTTCTCCTTTTCCGATTTCCGGACTTCCATACTGGCCACAACCTCTGCCAGTGTTTCACCAGGGTCATTTATGAAGCGAACGCAGTCCCCCCATACGGCGCGTTCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGCGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 95332-97082 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000003.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 95332 37 81.1 35 T........G......A..AT............G..T CACCTACCGGTAGCTACGGTAGTCAGCTTATTCTC 95404 37 86.5 36 A......A..........T.T..............G. GTTCCTCCGGTATCCCCGGTACCGAGACATCCAAGA 95477 37 91.9 34 ....................TG.....A......... TGCTCCAGATGGTTGACCGGGGAGCTATGACGCC 95548 37 100.0 36 ..................................... CCAAGAAAGCGCCGATACCCCGAGGACGTGGATCTT 95621 37 97.3 34 ................T.................... CCTCTTTTGCGGCGTCACCCACCTTGTCTAGGTT 95692 37 94.6 36 ....................TG............... CCCCAAGCCACCCAAGGTCGGCGGCGTCATCGTCGA 95765 37 94.6 34 ..A................................T. ATATGCCGTATCCATATTGGGCACTTGCATATAT 95836 37 97.3 35 ...............T..................... TGTTTGACCGGTCTTTTCCGAAGACCCATTTGCAG 95907 37 97.3 35 ....................T................ CCGATCCGCGCCGCACTTTGCCGGCCCTTGGGAAT 95979 37 100.0 34 ..................................... CCTGCCCAACCTGCGGACAGGACATGCCAGAGGA 96050 37 94.6 34 ..................T.................T CGAAAGCGCAACAACGCGGGGAGGACAAACCGCT 96121 37 97.3 35 ................A.................... TATCCGTAGCGTGGGAGGGCTGCTTCCGGCATCAT 96193 37 97.3 35 ................A.................... TATCCGTAGCGTGGGAGGGCTGCTTCCGGCATCAT 96265 37 100.0 34 ..................................... TATATTTTCTGACCCTCTTGAAGGCGTTTTTCAG 96336 37 97.3 35 .......................A............. TGACGGGCACATCGCGTTTTGTCTCAATTGCACAG 96407 37 97.3 35 ....T................................ TTTCCTCGGGCGCCTTCTTTCCGCATTGTGGGCAG 96478 37 100.0 33 ..................................... GCGACCGTTCAGGCTGGTCGGAATGCTGACGTT 96548 37 94.6 35 ................C............A....... CTCACTTTGCATCGGCAGCGCGGCCGCCTTGTGGC 96620 37 100.0 34 ..................................... GCTCGACCATGATCTCGTCGCGGCCACCGGCAAT 96691 37 100.0 34 ..................................... GGCCGAGCGGAAAGCCTTTGAGCAGCGCGGCGAA 96762 37 100.0 34 ..................................... GTCGCTGAGCGCGCAGTCTGTGTGGGTCGGGAGA 96833 37 100.0 34 ..................................... AGACGACGCCCGCTTGGTCGATGTAGGCATCCCG 96904 37 100.0 34 ..................................... TGATGACGGCGCTTAAGGCGCGGATTGATAAGGC 96975 37 100.0 34 ..................................... GGCGCGTTCCCCGGCACCCGTCTTCCAGTTTCGT 97046 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 25 37 96.8 35 GCTTCAACGAAGCCACGCCTCACGGCGTGGATGTAAC # Left flank : CCCGCTCGTCATCGTGTTGCTGTTGGGAATCGCCTATATGGGTGCTCATGCCTTTGAGAGAAATGTTATCTACAATCTGGTCTTGAATGTCGTCATGATCGCGATATGGATGTTGCTTGCCCTTTTCAACTGGCTAGTGTTGCCGGGAGAAGGAAAAAGAAAAATCGCCGCTTCTGTCGCCTTGTCCCTTGTTTACTTCATCCTCTTTTTCTTCATCACAAGCGCCATTTTGCCCAAAGTGCGCCTGTTCGGTATCAGACCGGGTTATGGTCTCTATTCCCATGAGTCGATCCGTGTAGGCGTGTACTTGATTTGGGCGCATCATTTTATTTTGTTGCCTCTGTGTACATTCTTTTTTAGCATTATTGTTAATCGCAAAGAAGCTTTTAATGAAAAGTAGGCCAATTTACAACAATTTCTAAAATGTTATTCTCAACGGAGCCGCGTATTCATTACGCGGACGGATTTTTTTGTCCAAAACTAGGCATGGCTTAATAAAT # Right flank : CGCTATTCCTCAAAAACCCTTTCACAGAAGGGCTCTCAGTCCCCTCTCGCGCGAACCCCATTTCGATTTGCTCAAAACAGATATAGCGCACTTCCTACAAAATAAAATCCTTTGAATAGACAAGGGTTTTTCTTCATCGCGAACCTACGGCTATTTTATGATCGCCACAGGTTCGCGCATTTCTAAGACAAAACATCAAACGTTCTGATTAACCCAGATCAGGCACAAACATCCCCAACCCATAGTGATTGCCGTAACCAAAGGCCAGCGGACCAGACACAGGATTGTCAAATTCAAGCGTTAGGCTGTAGGATAAGCCGGCGCTGTGCCCCTTTCCCCGTTGACGGATTGTTTTAAAGGAAAGACAGCGAACAGGGTGATCCGGACGGGCCATGATGGTCGAAGAGCATTTTATACTGACAAGATTAGCCCATTCATGGCGATCAGCATAATGTTTGTTCCATTCTTTGCGAATCTGATCTTCCGGTCCGTCGATTTGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACGAAGCCACGCCTCACGGCGTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.80,-13.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 48672-50470 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000012.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48672 29 96.6 32 ............................A CCAGCTTGTGTCTTGCTTGTTTCATTGGTTCC 48733 29 100.0 32 ............................. GCTTGCATGTCCTGGGCGAATGTTGCAGATGA 48794 29 100.0 32 ............................. GCAACTGGTCCAACTCTTCGGGTTTAATTCCC 48855 29 100.0 32 ............................. GCAGACACGCCGACAGTGGCCACCAGCAAGGC 48916 29 100.0 32 ............................. CGTTGTGGGCAGTTTTCCGGTGACCACTTGAT 48977 29 100.0 32 ............................. AAGTAGATTTAGATAAGTTTATAAAATATTGC 49038 29 100.0 32 ............................. TCAGCGCCGCCCCCGGAAACCCAAGTCGATCG 49099 29 100.0 32 ............................. GAACGCTGCAGTTCATCCGGGAGCAGGAAAGC 49160 29 100.0 32 ............................. TCAACAGCGGGCACATTATCGATCAGCAGGAG 49221 29 100.0 32 ............................. GAAAATCAACAGGGTGATCTGCCCGTCCTTTT 49282 29 100.0 32 ............................. TGCAGGGAGTATGGGATCAAACTGCGCGTTGC 49343 29 100.0 32 ............................. ATGCTATGTTATTAGCAAATGTTCTTCGAGAT 49404 29 100.0 32 ............................. GCATTCGCCGCCTCCCAGGGCTACGACCTGGT 49465 29 100.0 32 ............................. ATTCCGCTCGCAGAGTGGCAGGCGCTGCGCTT 49526 29 100.0 32 ............................. GCTGAAGGCATTGGGGAATGCCGTGGTTCCGT 49587 29 100.0 32 ............................. GATTCCGGGGACGCGGCGCTGCTCGTCGAGTT 49648 29 100.0 33 ............................. CCATGGATATCAAATTACTGGAGGCGTTGTCAA 49710 29 100.0 32 ............................. TTCTCCAGGACCACCCTTGATGACTTTGATCC 49771 29 100.0 33 ............................. ACGTGTTCGCGCGTTGTAATATCAGCCGGTTGC 49833 29 100.0 32 ............................. ATATCGCCCGGGCTTGCGATGGCGGCGTATTT 49894 29 100.0 32 ............................. CAAGACACCGGGGCGAAATGGTACGGACCCGC 49955 29 100.0 33 ............................. CAGAGCACGCCCTGCTTACATACCAGGAAAATC 50017 29 100.0 32 ............................. TGGATTGACGAGCCGCACAAGGTCATCCGGGC 50078 29 96.6 33 ........T.................... TCAATAAAGAAAGCTTTGATATCGTCCCAATTC 50140 29 100.0 33 ............................. AGAAGATCCGCGAACTGAAACAAGAGAAGGGCC 50202 28 75.9 27 ..............T..-C.CCC.A.... AAAAAAGCTGAAGAACCGACCGAAACC G [50213] 50258 29 100.0 31 ............................. CGGTGACGCTGGACGTAGCGGTGAAGTAACC 50318 29 89.7 33 ............CA...C........... TACAACGTTCACCATTCCAACGAAAATCCCAGT 50380 29 79.3 33 ...........ACA..T...T.....A.. TAAAGGGGCGAACGCGTGATGGCCGATCACGGA 50442 29 79.3 0 ..A....T..T.CA.A............. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.2 32 ATGTTCCCCGCGTGCGCGGGGGTGTACCG # Left flank : AACTGGTCGACTCGGCCGATCTGTACCTGTACAAAAAAGTGGGCAACCAGTGGCAGATCATCGAAAAGAACTGGGAAGTCATCCGCAACGAGATGGTTAACCGCATGACCAATGGCGGCCTGCCGATGCTGTTTGTGGAAGACGGCGACTACAACCGCGCCGGCGAACTCTTGATCCGTCACGCCTATGAAGGGGTGGAACTGGACATTCCCTACCTGGAGAAGACGCTGCCCCACCTGTTCACGCTCTGGGGCAGGGCGGTCTATCTGGAAACGGCGGTGGATGGGAAGCGGATTCAGTTTAGTTATAATGGGGAGAAGGTGCAGAGGAAGTATTTGTAATCGGGGAAAAGGGGTAGAAGCTCTTGAGGATTTGCCATCGACGTGAGAGTCGATGGTTTTGTTTTGTGTAAAAATTGGAGGAAATTATCAGCTGTTGACGAATGATACCTGAAAGGGGATTTTCGAGAGGAAGCCGCGTCATTATTAGGTTTTTCTAGT # Right flank : GAGAAGCCGCCTCTAACAGCGGTGACCGTCTCCATGCTTCCCGCTCTCGGGGTGAACAGTTGTGGATGCGGGCTTTGGACAAGTTTGGTACATGTTCCCCGCGAACGCGGTTTTATGCTCCGGGTTGGACCGGCATATAGACGGTTGTGGATGAGAAGAAGAATCATTTTAGCTGTAAAGGTGAAAAAGTCCAGAGGAAGTATTTCGAGAAAATAACAACAAACTGGGATCACCGATAAGGTTCTATGCTAGCGAACTTTTTTTGCATGTAAAAAATGGAGGGAAATAAAAGGTTTTGAAGAATAGATAATTTCGAGTGGAACAAATTGAAAAAACTCTTGGGTGAACCAAAAGGGGGATTTTACTCCCCCTTTCCGCTCCTTCCGTTCGGCTTCGATGGACATTATGCTGCCTGTGCGCGCGGGAGTGAAATAATACAGCTCACCCCCGGGTACTCATGGGTTTTATGCCTCTGAGCGAGTGAAAGCGTACCGCTGATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGTGCGCGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 59619-61076 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000012.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 59619 29 96.6 32 ............................T GTTGGCCGGAAAGCTGGTCGATGGCATCGGTT 59680 29 100.0 32 ............................. AAATTAGAGGATATGTAAGGTGTAAGCATTTA 59741 29 100.0 33 ............................. AAGAGATTATCGACGTTACCGCTATCAATCAAA 59803 29 100.0 32 ............................. TAAAACGCCGCCTGGCCGAGAAAGGATTCCGC 59864 29 100.0 32 ............................. ATGTTCCTGAAATCGGATTTCTGCCAGGTTCT 59925 29 100.0 32 ............................. GCCAACCACGCCATCGAGTTTATCGAGAAATA 59986 29 100.0 32 ............................. GGGAGCCATCCATTCCACGTCCCGGGCCAGGG 60047 29 100.0 33 ............................. TTCTCTATGACGGGGTTCCGTTCAGCACCGGTC 60109 29 100.0 48 ............................. AAAACACCGCGCTCGCGAAACCGTACGGCCTCATCGCCGCTATCCTTC 60186 29 96.6 32 .G........................... ACTGTGCCGATGCAACCAAGGAAGGCTTTCGC 60247 29 100.0 32 ............................. AAGGGGGCGTAGGGGCGATGGAATGGGGAACC 60308 29 100.0 32 ............................. AAGAAATGCAAATACGCCGGCCAGTGCTTCAA 60369 29 100.0 33 ............................. CGAAGCCGCGGCGCCTGGTGGTGCGGACGCTGC 60431 29 100.0 33 ............................. CAGCTATCATGCTAACCATGTCAAAGCGATTAA 60493 29 100.0 33 ............................. TACCACTTTCGGCCATGACGGTAACGTTTCGGA 60555 29 100.0 32 ............................. AAGAACGAGAATATTTAAATTTATCTGTTATC 60616 29 100.0 33 ............................. TATGATTATGAACGCATGACGCGCAATCCTGAC 60678 29 100.0 32 ............................. GCCACACAACCAGCCCAGCACCGCAAAAACCC 60739 29 100.0 32 ............................. ACGTGGCGGCAATCGTCGCCATAGGCGAGCCG 60800 29 96.6 32 .......................A..... AACTTTGCCGCGCACTTCAAGAAGGTTGCTAA 60861 29 100.0 33 ............................. ACAACAGTGAGTGCCAGGGGTAAGGGCGCCCTC 60923 29 96.6 34 ............T................ GTTGTCGACGGTGATGCGTCATTCGCATCGGAAC 60986 29 96.6 33 ........T.................... TCATAACGCTTGGCGCTTAGGACCAGGACTTTC 61048 29 75.9 0 ...T........T...T........GTTT | ========== ====== ====== ====== ============================= ================================================ ================== 24 29 98.3 33 ATGCTCCCCGCGCACGCGGGGGTGAACCG # Left flank : TTGGCTTGTCGTCAACAATTTCATGACAAACGGTTGTTGGAGCGAGTTGCCAAAGATTTATCGACGCTGTTTTCGGGGATCAATCTGCCTGAGGTGATCGAAGGGTACGATGGATCCGATGATAAACCAGGAGGCATCTGGGACGATCAGGATGGCGTCGTATCCGGCGGAAAGAACTATTCTGATGAATGAGAAAGGGGATTAAGAGGGGAATGGTCGTTATTCTTATGGAACGTGTCTCCTCTTCTGCCCGAGGTGAATTATCCCGATGGCTCGTGGAAGTCAAATCAGGCGTTTTTGTAGGTCGCATTTCAGCAGTGGTGCGAGAAAAACTGTGGGAACGCATCTGTGTACCAGCGGGAGGTGGGGCAACACTCATTTACACAACAAATACGGAACAAGGTTTTACGGTGAAAACCAACGGAAAGAGCCGGTATCGTATCGTAGACTTGGAAGGGGTTTTCTTGGCGGAAGCCCCGTAATTATTAGGTTTTTCTAGT # Right flank : TTCGCATAATCGCGTATTCTTTGACCATCTTGTGATTTGTCGAGTGAACAATCTACGTTCTTTTTTCGGTAAAAAACTTTTATAATTCGTATACGAATGTAGTGCGATAGGGGAAATAAAAGAAGCGACGCCCAAACCTAATGCATGGGCGCCGCCTCTTTTATGTCATGTACGTAAACCGTATTCAGAACCCGTAACCCCAAAACGCCAACTTACTCCGCAGCGCCTTGCTCCACAGCCAGGTCTTCCGTCTCGGCCAACTCAGGCATCACGTCGCCTTCGGGGACCATGGCGTCCTCGGCGTCGACTTCATCGGCAGCAGCGGTCTGGACGGGCAGTTCGCCGGCGCTCTTCCTGCGCTGGTACTCTTCGATCAGAGCGTTGATCCCCTGGAACATGGCGTCCTTGCCGTAGAGGAAGCGCATCATGCTGGGGACTTCTTCCTTAATGTTGGTGACGGTGATCTCCTTGCCCCGCTCTTCCAAGAGGCGGAGTTGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26111-25485 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 26110 37 97.3 40 ............T........................ CCAGCGCCTCCAGGGAATCCGCGGCTTGCTGTGCCGCCTG 26033 37 100.0 36 ..................................... ATTTCCGTTTTGATAGTTTCCGGGGTGACACCCTCG 25960 37 100.0 34 ..................................... ATTGAACGCATCACCGGAGACATCGCATGGTTCA 25889 37 100.0 36 ..................................... ACTAGAGCCCGATAACTTTCGGCACCTTTGCATTTC 25816 37 100.0 37 ..................................... TAGTTGAAGCCGTTGGCGAGGACGTTGCGGCCTTTAA 25742 37 100.0 37 ..................................... TTATCGGTTTTCGGCGCTCCGCCATCTGTCGTAAATT 25668 37 100.0 37 ..................................... AATTCCAGTTGGCGCTGTTGCAGTGCCTGCTGTCCCT 25594 37 75.7 36 ..A......GTC.A......A...........AC..T TACAAATAAGCTTTTCGTGGTTATACTTCGCTTCCC 25521 37 75.7 0 ..A........C.C....C....C.T.....A...CT | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 94.3 37 GTTACAGGAAAGGTTAATTCCCGTAGGGAATTGAAAC # Left flank : TACGTGGGTCGGCGAAGCGGCGACAGGTGTTTTTGGATGAGTCGCTGCAAGAGATGGCCCTGGTGGCCTTGGCGGCGGCCAGAGCGATCCGCGAGGCCGGAGAGCCGCTAACCCCAAGCTGCTCCGGCGCATCCATCGGGATGAGGACAGTGTAATCTTTTACCGCCAATGCCGAGCCTGTGAAAATGATGTTGAGCGGTTGGGGCGAAAGCTGGATCTGGTCGGGATCGGGAATATTGTGTTGTAATTGAGGATGGACTAGAAGGGGTTGACGTGGTAGTTTTGTAGTGAGACTGCGGTGATTGCGAGCGGGTGGCGTTTTGGGTTTTTCCACGCGAGTGAGGCTACTCGGCAGAAAAGGCGGGGGTGGCTCGATCCGATGAAATCAGGGGTTGGAGTGGGATTGAGAGGGGGGAGGGTGTTGAAGTTAGGGGCGTTTTTGGAGTGGCTCGCAAAAGGTGGCGGGAGGGCTTGTGGGATAAGGGTTGAGAGGGGGCGCG # Right flank : AAATATGCGGGTTTCATTAAGTATCATTGTTTTATTCGTACTAACTAAATCAATCTACTCGGCAAAAATTTAATTTTCATCATGGAGGCCCACGTTGCACACTCAATCCACGAACCTTCACATCCAACTCATCACTCACTTCACATCCGGCAAGGCAATGGCCCGAGGTCTGGCAGAAATGTACAAAGACCAGGAACGGCTTTCCGTTGCCTGGTCTTTTTGCTTTGCCCTGCTCAACACCTACTGGAATCTAACCGCCTCCAGGCTCGGTCCATCCGCGCCGATCCGCCCCGTGCCCGTCACCCTGCCGCCCCTGGAACGGTCGGCCCAAACGCTGGCCCAGCAGATGGGCGAACATCTCGCCGAGCGCCATGATCCCCTGGAAAGCGGCTATCTGGTGGGAACCGTCTATACAGCCATGCTGCCCGAAGCGCAGCGTTCCTCCCTCGGCGCCTACTATACGCCGCCGTCGCTGGTAAACCGTCTGCTCGATCTGACGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGGAAAGGTTAATTCCCGTAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 43156-42523 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 43155 37 100.0 38 ..................................... TGGCCTCCAACGTCACAGTACTGAACCAGGTCTACGTC 43080 37 97.3 39 ...................T................. AGATCAACCTTTGAAAATGCACGGAGTTCTATGGGTCTT 43004 37 97.3 36 ....A................................ TAGATGACGCGAACGGCTTGGAAGATGTTGTAGGGC 42931 37 100.0 38 ..................................... CTGACGTAGGTACGCTATTGCGGATACTCCCGTTGCAG C [42920] 42855 37 100.0 35 ..................................... TTGAGATCGTAATCCTTGAAGTCGAAGACCTTTGC 42783 37 100.0 42 ..................................... ACGATTTTTTTCTCGCCAGTGATGCCGTAGGTCTTTTCCAAG 42704 37 97.3 38 ...........T......................... ACCGCCTGATTCATCCTGGTCAAGTGGGCGTCTGTCTC 42629 37 94.6 33 .......................C........A.... GCAGGGATCAGTTCCTTGATTTGGCCAGGTCGG 42559 37 89.2 0 ............A.........CC.......C..... | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 97.3 38 GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Left flank : AATCGCGGAGTTGAAACAGACCGGGTGTTAGGGCCGAAAAGTCACGGGAAATGACAGTAGGTTCCTCCTGATCACGAGCGATCACCAGGGAGGCGGAGATGGCGGCACGATGAATATCCAAGCCGCACATAACTGGATAAACAGCAGGGATCATCGGGGAGTTCTCCCTTCAAAGAAAGTAACCGCAGTGCTACAACACCCTAAAATACCGCTATAATGCGGGGTAAATTGGCTTACGTGCTCATCGAAAACAGGTTCCGAGGCACAAAGGGGTTGTCCAAAACAGGGGTTGTGGTGCAGTTTGAAACACGCACTCAAGGTGCACAATCCACTCGTCCTACAACGCTGCGGTTGAAGGAGATATTCGACAAAAAAGACATAATACTGCTTGAATTAGAAGCAGTACCGATATCGAGATTTATTTTCATGGATGGGTGTGTGCGGGGGCTCATATGGGTTTGAAATGAAATCATTTCGTGATGAACATAGGCGCCTACTTT # Right flank : GAATAAGGATGGACGGGAGCCGTCAGGTGTGCATAACGGAGACAGGAAACAATAATTCCTGCGGGTACATGCTATGTTTAACAGGCTCAGTGTAAGGGTAAGTTCGAGTTAACTAAACATCATATACTAGAAACAGCCGAACAGTTTAAATGCCTTAAGGGGGGGTCTTTACGTGAACGACAACGAGTTTCAAAACCTCGTGCTTCAGAAACTACGGGATTTAAAAGATGGGCAGCATCGTCTTGAAAGCGAAATACGCGGTGAAATAAATTCACTCAAGCAAGAAATGAGTCGTCGATTTGAACGCTTGGAACGGAGCCAGGAAGATGATATAAAGGGGATGCTCAAACCGAGTAAGATCTAATCTCCGAACCGTCATAGACAATTGACAGAAACCGTGCAGCAAAACCACCGAACGGTTTGATAAGAAAGGAGATGACAAATTTGCTTCTCAACGCGATTTTTGAACTGGAAGCGCCGCAACAGACAACACAAACAAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 3 45861-45243 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 45860 34 100.0 39 .................................. CTCCCCAGGATGATCCCGGCCTTGCGCGGATCGCTAGTT 45787 34 100.0 41 .................................. GTTGACGTGTTGTAACTCTGAATAATCGGCGTTTTTTGGTA 45712 34 97.1 38 ....................C............. CCGACGTGGCCGATGTAGCGTTCCGGGTCCCACCCGAA 45640 34 97.1 42 ....................C............. GGATGACATACCAACCGGCTGAGCGCCATCGTCTTTTTCGTA 45564 34 97.1 39 ....................C............. TTAATACACCGCTGCCTGAGTCTGCTCCTTCTGCTTGTA 45491 34 94.1 39 ..........T.........C............. GCGACATCGCGCTGTTGCCCGATCATGTAGCCGAGAGTA 45418 34 100.0 37 .................................. TGTCCAGCATCCTCCATCTCTTTCATCAATGTAAGTA 45347 34 97.1 37 ..........A....................... ATTTCATCAATATATTCTTGATTAATCTCAAAACGTA 45276 34 91.2 0 ..............................GCT. | ========== ====== ====== ====== ================================== ========================================== ================== 9 34 97.1 39 ACAGGAGACGGTAATTCCCGTAGGGAATTGAAAT # Left flank : TGACAAGCGGCGATCAAAGGTGTTTAAAACGTTGAAGGATTACGGGACCCATGTGCAGGAGAGCGTGTTCGAGGTGGTGCTGACGACGGAGGATTACGTGGTACTGCGGCACAAACTGCTTCGGCGCATCCACCGCGATGAAGACAGCGTGAACTTTTACCACCAGTGCCGCGCCTGTGAGAACGATGTGGAGCGGTTGGGTCGGAAGGTGGAACTGGTCGGGATCGGGGATATTGTGTTGTAATTGGGGATGGACTGGAAGGAGTTGGCGTGGTAGTTTTATAATGGGGCTGAGGTTGAGCGCTAGCTGGTGGTGTTTTGGGTTTTCCCGGCGAGCGACGCAGGTCGGCAGAAAAGCCGGGGGTGGCTCGATCTGATGAAATCAGGGGTTGGAGAGGGATTGAAAGGGGGGAGGGTATTGAGATTGGGGGCGCTTTTGGAGTCGCTCGCAAAAGGTGGCGGGAGGGCTTGTGGGATAAGGGCTGGGAGGGGGTGCGGTT # Right flank : GAAAATAAAAATCCATGCCACAATGTATCACCAACAAAAATCTCTTACTATGAAGTAGGAAAACAACAATCGAGGACGAAAAAATTAAGTGACGGACCAAAAATGTGCGCACTTAACTAAGGCGGCCACAACGTGTGACTTGCGGCCACCTTGGAAACCAGGCGATGGCGGAGTGCGGGATTACGTTTTGGTTCGTTGTTTGGGTGGGCGTCCTCGGCGGCGAGAAGGTGGTGCTTCTGCGTCGCAAAGAGGACGCTCTTCTTTTTGACCAACAATATCCGATTGGGGTTTCTCCTCGGATGAAGTCTTTGGGGAGCGGCGTTTGGTTTTTACCTTCGATTTATCTTCTAGATCTGATGAAATGGTTGCTTCAGAGACTTTGGAAATCGCGTAGGGAGTCGTCGTAGGAACGGTGCTTAAAGATATTTGATCGGTAGAATCAGAGGTTGGTGAGAGAATTTCTGAATGCTCTGAGAAGACTTCATCTCCGTCTTCAATCA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGGAGACGGTAATTCCCGTAGGGAATTGAAAT # Alternate repeat : ACAGGAGACGGTAATTCCCGCAGGGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 4 48016-47465 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 48015 36 100.0 38 .................................... TGCAAAAGTTTGGTTTCTGCTGTTAACGGTGACGGTGC 47941 36 100.0 36 .................................... TTCACGTTATCACGCTCCTAAGGATCGAATGATGGC 47869 36 100.0 38 .................................... TCCACCCCCTCGGCATCCACCCAGCCACCTTGCCCATC 47795 34 88.9 38 .........--.G........T.............. TGGCGACACCCAAAACGCCGGCGGAATCCCCGGCCACC 47723 36 91.7 37 ............GA.........C............ CCGGAACTTATTGTTCACCACGTGAACGAACTTCTGC 47650 36 83.3 38 ...T..AA....GA.................A.... CATTTCACCATTGATGTAATCTGCCAAGCATTGCAGAA 47576 36 83.3 40 ...T...AT...GA........T............. CGTGGCGACAAAGATTTTGTTGAACAGCTCGGCGACGAAG 47500 36 75.0 0 ..CT...A...AGA........AC..........G. | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 90.3 38 GTAACAGGAGACTGTAATTCCCGTAGGGAATTGAAA # Left flank : GACGATAAGCGGCGCATGAAGGTGTTCAAAACACTGAAAGACTATGGGACCCATGTGCAGGAGAGCGTGTTTGAGGTGGTGCTGACGACGGAGGATTACGTGGCACTGCGGCACAAACTGCTCCGGCGCATCCACCGCGATGAAGACAGCGTGATCTTTTACCGCCAGTGCCGCGCCTGTGAGAACGATGTAGAGCGGTTGGGGCGGAAGGTGGAACTGGTCGGGATCGGGGATATTGTGTTGTAATTGGGGATGGACTGGAAGGGGTTGGCGTGGTAGTTTTATATTGGGACTAAGGTTGATCGTGAGCGGGCTATGGTTTGTGTTTTCCTGCGCGAGCGACGCAGGTCGGCAGAAAAGCTGGGGGTGGCTCGATCCAATGGAATCGGGGGTTGGGGAGGGATTGAGAGGGGGGAGGGTGTTGAAATTGGGGGTGTTATTGGAATCGCTCGCAAAAGGTGGCGGGAGGGCTTGTGGGGTAAGGGCTGGGAGGGGGTGCG # Right flank : CTTAAAAGTCTTTGCCGTTGAGTATATTGATAAAAAAAGAAGATGACAAATTTGCTTCTCAACCGATTTTTGAACTGGAAGCGCCGACGGCCAGATGATCAAGGATGTGCCCCTTTCGGCGGTCAATCATGTGGTGATCGGACAGGCGGCGTCGCTTTCCAGCGCGGCGCTGTCGGCGTTGAGCGATCTGGGGATTCCGCTTTATCTAATGGAGCATGGCCGGGTGCGCAGTTGGTTGCAGCCGAATTGTGAAAAAAACGTGCCCTTTCGCCGCGCCCAGCTTCGCTTTGCCGAATCGGAAACCCAGGCGCTGGCGGTGGCGCGGGAGATCGTGCGCGGAAAAATCCTCAACCAGCGGACTTTTTTGCAACGGGGAAACCGCGAGAGAAAAATTGACCGGATCCAATCGGTGGTGGAGCGGTTGGAAGGGCTGGCCGCCGCTGCCAAAGAGGCCGAAGACAAAGAGAGCCTGCGCGGGCTGGAGGGATTGGCCGGGCGGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:0, 3:3, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAGGAGACTGTAATTCCCGTAGGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 5 52595-51295 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 52594 37 100.0 39 ..................................... GCTTTGGCGATCGCCGCATCCAGCCCGATAAGCGCCGCC 52518 37 100.0 35 ..................................... TCATTCTCCCGCCGCAGGTCATCCATCTCCGCCTG 52446 37 100.0 39 ..................................... GCTTCGGGTTTGTGTTTGGGGCCAGCGCCTTCACGCCGG 52370 37 100.0 36 ..................................... ACGCCGGCGTTGATCGCCTGGTTGAAGTAGTCTTCC 52297 37 100.0 39 ..................................... CCATCCAACATAGCATCATCGGCCGCAAGCCAGAAGCCG 52221 37 100.0 36 ..................................... CCTTCGTGCACCTCAACGCCGTTCTTGTCCATTGCG 52148 37 100.0 41 ..................................... GTAAAATAGATGTAGTTGGTGTGCTTCAGGTAGACGCTCTG 52070 37 100.0 37 ..................................... GGTTCGACGGTGGTGACGGGCATGATGAACATGAACT 51996 37 100.0 35 ..................................... GCACTCGCCAGCAATGGTATCGATCAAGGTTTGCT 51924 36 97.3 39 ........................-............ TCGAAGACCAGTCGCAGAAAGCGCGGGATGTCGACTTCG 51849 37 100.0 38 ..................................... ATGTCGATGTGGACATGGTCTGTGGGCAGTTCCATCTC 51774 37 100.0 38 ..................................... CTTCTCAATTTAATCCCACCACTAAGTTTTCCACTTTT 51699 37 100.0 40 ..................................... GATACATAGCGTTCGTACCGTTCTTCACCGGCTTTGACTT 51622 37 100.0 36 ..................................... CACCAAGCATTGCGCCGGCCTGTTCCCACAGGGAAA 51549 37 100.0 35 ..................................... ATGTCATTTTCGCGCTGGCTGAGATTGGCTTTTTC 51477 37 97.3 34 .............A....................... GTCTGATGCGCCTCCCACTCCTCTTGGGTTTCGT 51406 37 94.6 38 .............A......................A GTTTAAACATTAGCTCCTGTCGCTCATGGAGGGCCTGG 51331 37 91.9 0 .............A....................G.C | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 98.9 37 GTATCAGAAGACGGTAATTCCCGTAGGGAATTGAAAT # Left flank : CTGCGGGGGTAGGCTGGAGAGCTTACGCTCCTAAATCCGAACTTTTTGAAAAAAACAGGCTATGGGGACAAATGGCTCCTTAGCCTGTTTTTCTATCGTTGGCTCTGGCATTACGGTTATGCTTAGGTGTAAGCAGGAATTGTGGAAGATTCTGTAGAAGAGATGAAAAGCTGGTCGGGGGTCTCTCTTTCGTGTGTTTGTATATCACTGCAATGGCCCAGGTGGATGACCGCTATAAATTTGAGTGAATCGGTCACATCGATAGGGGAGCATGTTTAGCGGGAATGCTACGGCGGCAAGGTCTTCCTAATAGGGGCTGATCGGAGATCTTTTCGCGAGCGACACAGGTCGGTAGAAAACCCTGGTATCGCTCGATCCAATGAAATCAAGGGTTTGCGGGGGTAAAGGCGGTGAAAGGTCAATGAGTTGTGGGCATAAATTGGACTCGCTCGCGAAAGAGGTCGGGAAGGCTTATGGGATAAGGGCTAGAAAGGCGCGCG # Right flank : TTAAGAATCTTAAGGGTCGAGATATATTGATGAAAAAGGAGATGACAAATTGCTTCTCAACGCGATTCTCGAACTGGAAGCGCCGCAACAGACAACACAAACAACAATCCGCGAAGAAGGCGGAGAAAAACTTCACGGCATGTTTTTTGATCTACTTAAAAGCACCGACCCCGCCTTGGCGACGGCGATCCACGATCAAGAGGGAAAACCGTTTGCTATTTCCACTCTACGAAGCTTAGCACAGCGGACGCCCATGTTCACGCCTCCCGATAATCCCTTGTCCTCCCCAAAAGAGGGGACTGGACAAAACGAAGGCCGCCGATGGCGGTTCACCATCCGCTCGCTGGATCAGCGATTGAGCGAGGTGATCGACCGGGCGGCGGCTGAATGGGAGGGGAAGGCGGTCCGGATTGGAAACGCACCCCTTGTCATCCGCAACATCCGGGTCATGAAAAAAACCTATGAGGAGTTGTACACGGAATCGGAGTGTCGGAACCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAGACGGTAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 6 54502-53945 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 54501 36 100.0 40 .................................... TATCGTGCCTTTCAACTGTGCCCGGGCGTACTCGCTCGTT 54425 36 100.0 40 .................................... TCAGCACTCAGCCAAGCCGCCGTTAATCTGCTCCTGGAAC 54349 36 100.0 38 .................................... TCCCAACAGCATCAGGAGCATCGGGTTGATGCCAGCCG 54275 36 100.0 38 .................................... TTCCATCCGATAATTCACCGAATAACAAAGTTTATAAG 54201 36 88.9 35 ..A......G..CC...................... CGGCGTGTAGTCTTTCTAAGGAGTACCGGGGTCGA 54130 36 88.9 43 ..A...G..G...A...................... CTGTCCCGGGCCGAAGTCCTCGCCGCAACCCGGGCAAACAATG 54051 36 83.3 35 ..A..T...G...G........AA............ TGTGACGGAGTAGAGGTTGGCGCTTTTCACGGTTA 53980 35 75.0 0 A....GG...G.......C...-...A..G..A... | A [53976] ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 92.0 39 GTTACAAGAAACGTTAATTCCCGTAGGGAATTGAAA # Left flank : GATGACAAGCGGCGATCAAAGGTGTTTAAAACGTTGAAGGATTACGGGACCCATGTGCAGGAGAGCGTGTTCGAGGTGGTGCTGACCACGGAGGATTACGTGGCACTGCGGCACAAACTGCTCCGGCGCATCCACCGCGATGAAGACAGCGTGATCTTTTACCGCCAGTGCCGCGCCTGTGAGAACGATGTGGAGCGGTTGGGGCGGAGGGTGGAACTGGTCGGGATCGGGGACATTGTGTTGTAAATGGGGATGGACTGGAAGGGGTTGGCGTGGTAGTTTTATAATGGGACTAAGGTTGATCGCGAGCGGGCGGGTTTTTGGGTTTTCCCGTGCGAGCGACGCAGGTCGGCAGAAAAGCCGGGGGTGGCTCGAACCGATGAAATCGGGGGTTGGAGAGGTTTTGAGAGGGGGGAGGGTGTTGAGATTAGGGGCGTTCTTGGAGTCGCTCGCAAAATGGGGCGGGAGGGCTTGTGGGATAAGGACTGGGAGGGAGTGCG # Right flank : AATGCAGTCTGCTAGGTATGCATATTAGAGGGTTATGTAACAGGAAACAATAGTTCCCGACCTCAAGACAGTCGCCCCCTGGCGCGAATGGGAAATCCGCTCCCGCGAAGACGCCATCGACTACGCCAACGCCCGCAACATCCCCGTGCCCGTCAAAAAAGACCGCCCCTACTCGATGGACCGCAACCTCTGGCACTTGAGCCACGAAGGGGCTGACCTTGAAGATCCCTGGAACGAGCCCCAGAACGACCTCTTCATGATCTGCACCGCGCCCGAACAAGCGCCGGACAAGCCGGAGTACGTGGAACTGGAGTTTGAAAAGGGCATCCCCGTCAAACTGAATGGCGAGGCCCTCGGCACCGTCGAGATGATCGAAAAGCTGAACGCCATCGCCGCCGCCCATGGCGTGGGCATCTGCGACATGGTGGAAAACCGCCTCGTCGGCATGAAGTCCCGCGGCGTCTACGAAACCCCGGCCGGCACCGTCCTCTACGCCGCCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAGAAACGTTAATTCCCGTAGGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 7 58636-58029 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 58635 37 100.0 37 ..................................... TTCAAGAATTTCTTCTGGAGAAGAATCATGTCCACGA 58561 37 100.0 16 ..................................... GGCATTGGTTAGGTAC Deletion [58509] 58508 37 67.6 34 TC....A.C.TT.TC..G..T.AG............. ATTTGCAGCTTGGATCCGCACTCTTCGCATGGAT ATTGAG [58488] 58431 37 100.0 35 ..................................... AAACTACTGTCTTGCGTTCTTCTTCTGTCATATAG 58359 37 100.0 36 ..................................... AATTTGAGTGCTTCTTTTTCGGTGGGAAAATAACGG 58286 37 100.0 37 ..................................... AACTCCATCAGGAAGTCTACGGCGCGGCCGTGAGTGC 58212 37 100.0 37 ..................................... GCATACGCAGGATATAGGCGCAATATGCTCTTTTATT 58138 37 97.3 36 .............T....................... AGGAACAGGTCGACATTCTTCAGGCTCCACACTTCC 58065 37 97.3 0 ......................C.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.8 34 GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Left flank : ACCGCGCGGTGGCAGGGCGGAGGATACCAACCATCACATGCTCGAAGGCCGCTTTCAGGATGAGCGTCGCAACGAACGCCGGACCCGCAGCGACGGCGGGCGGGTGCAGACGCCACATGGGGTTGCATAGGCGGAAGCAGGAATTGTGGAAGATTTTGTAGAAGGGATAAAAAAGCTTAGTCGGCTTTCCTTTCATCGTTTGCATATCACTGCCACGGCCCGGCAATAGAGAACGGTTGTAAATTTGAGTGAATCGGTCAAACAACAGGGAAGCATAAGCGGGAACACTACTCCGGCGAGGTCTTACTAATAGAGGATGGTCGCAGATCTTCTCGCGAGCGACGTAGGTCGGTAGAAATCCCCGGTGTCGCTCGATCCAATAAAATCAGGGGTTTGTGGGGGTTAAGGTGGCGAAAAGATAACGGCTTACGGGCTAAAATTGGACTCGCTCGCGAAAGAACTCCGGAAGGCTTGTGGGATAAGGGCTAGAAAGGCGCGCA # Right flank : GCAGAGATGGTTACGGGATCGCCGTCGGGGTCCCAAAGTACTAGAAGTCATAATTCCCGTAGGAACGTGTCCATCGTAATTCCCACAGGGAATTGAAACTTCCCATCCGTTCCCAATAGAGCTCCTAGAAATATCTCAGAAGACTATAACTATTGAGAATGAGACTTAAGAATCTTAAGAGTCGAGGTATATGGAAAAAAGGAGATGAAAAATTGCTTATCAAATCTATTTTCGAACTGGAAGCGCCACAACAGACAACAATCCAAGAAGAAGGCGGAGAAAAACTTCACGGCATGTTTTTTGATCTGCTCAAAAGCGCCGATCCTGATTTGGCGACGGCGATCCATTATCAAGAGGGAAAACCGTTTGCCATCTCCACGCTGCGAAGCCTGGCGCAGCGGTCATCCATGTTGACGCCTTCCGATGATTCCTTGTCCTCCCCCAAAGAGGGAACCGGGCAAAACGAAGGCCGCCGATGGCGGTTCACCATCCGCTCATTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 8 61371-60669 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 61370 37 100.0 42 ..................................... ACAACCCACTCATCACCATCCGGCGAGACTCGCTCATCCCAA 61291 37 100.0 36 ..................................... GGTTTTGCGCCTTCTGCGTAGATAACAGAATAGTCC 61218 37 100.0 37 ..................................... GTCGCCGGCGCCACGACGGCGATGTGGGCCTTGTCGC 61144 37 100.0 37 ..................................... TGTTCGCCAAGGTGTTGGCGGTCTGTTGCAGTTCAGC 61070 37 100.0 36 ..................................... CCGTCAATAGTAGGCGTGTCGGTATCAAGAGCGAAT 60997 37 100.0 35 ..................................... GCTCAACATGAAATTGATGAAGATTAAAAATCCCG 60925 37 100.0 37 ..................................... TGGAGTTTCTGGATCAGGTCGGAGATTCCGGGGCGCA 60851 37 97.3 37 ..............A...................... ATGGTATACAAATCATAATCGGGTGGGCAGGCCTCGG 60777 37 97.3 36 ......................C.............. CTGACCAGCTGCACCCACTGGGCGAGGATATGTCCG 60704 36 89.2 0 .C..........-..........C.......C..... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 98.4 37 GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Left flank : AAGTCAAATTAACAACGGGATAAGCTCGGTAAATTGGAAAGCTTTTCAAAAAAACAGGCTATGGGGACAAATGACTCCGTAGCCTGTTTTTCTATCGTCGGCTCAGGCATTACGGCGTTGCGTAGGCGAAAGCAGGAATCGTGGAAGATTCTGTAGAAGAGATAAAAAGCTGGTCGGGGTTCCCTCTTTGGTCGCGTTTGCATGTCACTGTGATAGCTCAGGTGGATGACCGCTGTAATTTTGAGTGAATCGGTCACATTGATAGGGGAGCATGTTTAGCGGGAATGCTACGGCGGCAAGGTCTTCCTAATAGCCGCTGATCGGAGATCTTCTCGCGAGCGACGCAGGTCGGTAGAAAACCCTGGTGTCGCTCGATCCAATGAAATCAAGGGTTTGCGGGGGTTAAGGCGGTGAAAGGTCAATGAGTAGTGGGCTTAAATTGGACTCGCTCGCGAAAGAGGCCCGGAAGGCTTGTGGGATAAGGGCTAGAAGGGCGCGCG # Right flank : GAAAAGGACGGACGGGATCCATCAGGTGTGCATAACGGAGACAGGAAACAATAATTCCTACGGGTACATGCTATGTTTAACAGGCTCAGTGTAAGGGTAAGTTCGATTTAACTAAACATGATATACTTGAAACAGCCGAACAGTCTAAACGCCTTAAGAGAGGCTTTCCGTGAACGATAACGAGTTTCAAAACCTCGTGCTTCAAGAGCTACGGGATTTAAAAGATGGGCAGCAGCGTCTTGAAAGCGAAATACGCGGTGAAATAAATTCACTCAAGCAAGAAATGAGTCGTCGATTTGATCGCCTGGAACGGAGCCAGGAAGATGATATAAAGGGGATGCTCAAAACGATAAATCGAAAGATAGATGATGTGCAGGAAGACCAACGGTCTATTACAGCCATTATTGGGGAACATGAAGTAAAATTACGCTCCCTTTCACGACGCCGTGTGTGAAGTGTGGAGAAGGTAGCAGTCCTCCACCAGCCGATATAATAAGAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 9 66926-65768 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEY01000016.1 Heliomicrobium undosum strain DSM 13378 Helio_und_assembly_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 66925 37 100.0 37 ..................................... GTGTAGTAGCCGCTGTGATTACGTTGGCCGCCAAAAT 66851 37 100.0 40 ..................................... TCGCCGCCATTCGCCGCTTGGCGATCTCCCGCCGGTAGCT 66774 37 100.0 38 ..................................... TATTCTGCCCACCATTTACGATTGTTCTCGGTCATCGC 66699 37 100.0 38 ..................................... GGTTGAAATAACCCTGCGCAGAGACGGGGCGGGTCAGT 66624 37 100.0 38 ..................................... AAACGCAGTGGAGAGTGGACCTGCTCGCGCGACTTATC 66549 37 100.0 34 ..................................... GAGTTACCAGTTTCCGTAGGTTGCCAGCAGGATG 66478 37 97.3 36 T.................................... AAGGAGTTCACGATGGCCACCGTCTGATCCGCCTTG 66405 37 100.0 42 ..................................... AATTGTGTTTCTTCACCATCCCATGAAATTTTGCGGTCATTC 66326 37 97.3 37 ...............T..................... CTGCCCATGATGGTCTGGAAAATTTTCCATTGTTCTG 66252 37 100.0 40 ..................................... ACCCTTGACGCCGGTTATCTGTTCGACGGCTTTGATGTTG 66175 37 97.3 39 ....................................C AATAGTTCGATCACCTTCGGGTCCGCCTTCGTCTGAAAC 66099 37 94.6 38 .......................C............C CTTGCGTTACGATACTTTAAATACCTGTTTCTACCTAT 66024 36 78.4 38 ..TG......GGA........-.............TC CCATGGAAAATCCTGAGATGTTGCCGCCATCACGAACC A [65993] 65949 36 89.2 37 ..C........G...............-........C GGTTTATAATTCCCCCTTTCTGCACGAAGTACAATCA 65876 37 75.7 34 ..CCT...G..TC...........G.......T...C CTGGTGTAGCAGTAATGGACAAGGACGTGGCTGA 65805 37 81.1 0 ..C.T.........A....TT...G..........T. | T [65780] ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 94.4 38 GTATCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Left flank : GCGGGGGTAGGCTGGAAGGCTTGCGCTCCTAAATCCGAATGTTTTTCAAAAAAACAGGCTATGGGACAAATGCTCCCTAGCCTGTTTTTCTTTCGATGGCTTAGGCAATACGGCTTTGCGTAGGCGAAAGCAGGAATTGTGGAAGATTCTGTAGAAGGGATTAATAGCTTGGTCAGGGTTACTTTTCGTAGTTTGCATATCACTGCGATGGCCTGGGATGATTATAGATGATGGCTGCAATTTTGAGTGAATCGGTCAAATCGATAGGGAAGCATGTTCAGCGGGAATGATACTAGCGAGGTCTTTCTATTAGAGGTTGGTCGTAGATCTTCTCGCGAGCGACGATGGTCGGTAGAAAACCCTGGTGTCGCTCGATCCAATGAAATCAGGGGTTTGCGGGGGTTAAGGCGGTGAAAAGACAATGAATTGTGGGCTAGAATTGGACTCGCTCGCGGAAGAGGTCGGGAAGACCCGTGGGATAAGGGCTAGATTAGCGCGCG # Right flank : TTTAATATTGATGTCTGCATGGTGATCTTTCTCCGATTTCAGAAAATATAATTCCTTACCCAGATCTTTAGTAATTAAAATTTTTGTGCAGGTGTTGATTTAATGGCTTTTGCTGACAAAGTTATATTTAAAACGTTAGATTCTAATTTAAAAGAAGAATCAACACACGAACTTGTAAATCCTTTTGAAAAATGCAGTGAAATGTTAAATTATTTTAAGTGGCTCGCTACAAAAGCACCTTTAAATGAGTTGATAGGTTTTGCAAGAAGTGACATTTCTATTGGTTCTAGTCATTCTTACGGTTCTCCATACTTTAGATTTTCAGCTTTTTACCTTCAATTTTGTAGGGACGAAAAAAAGGGGTGGTGGGACGAACAGGTTGCTGAGCTAATTAGATGTGATAATTTTTTTGACGACTGTTATTATGATGGTGCGCACCACAATATAGACTTTTATGTAATAGGAAAATGTGAATTAAGAGTTTTGAAAGAGATTCCTGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAGACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [32-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //