Array 1 69215-70739 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOD01000005.1 Gordonibacter urolithinfaciens strain ResAG-50 ResAG50_contig_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 69215 31 100.0 33 ............................... GACGCCATGTGTCACATCCGGCGCCACTACGAG 69279 31 100.0 35 ............................... GGCGGCGAGTTCGTGGCACCGGAAAAGCAGCTTTG 69345 31 100.0 35 ............................... GACACGACCACCATCCCGGCGTTGCGGGTGATGAC 69411 31 100.0 34 ............................... ATACCGAAGGCTACGCGCAAACGTAAGAGACGAA 69476 31 100.0 33 ............................... CCCCACGGCGTCCATGTAATCGTCGCCGTCCGT 69540 31 100.0 37 ............................... GCGCCGGGCTCGGTCTGGAGAGCTCGACATACGTCCA 69608 31 100.0 33 ............................... CAAGGTATTGACTCTGGTAAAGGGTTATTTTCA 69672 31 100.0 36 ............................... CAGAGCGGGCGGAGCGTCCACCTGCTGCCCCTTCTT 69739 31 96.8 33 ....................A.......... CGATGCGTAGCGGCTCGGCACGCCGTTGCGCTT 69803 31 100.0 35 ............................... CAGCACCTCCTCGCGCGAGAGCGCGGCCAGCTCGG 69869 31 100.0 33 ............................... CATATGGGTGCCCACGGGCATCTGCGATATCAA 69933 31 100.0 33 ............................... TCTCCTCGGTCACGAGCCATGTGTTGGTGTACC 69997 31 100.0 34 ............................... CAAGGCCCTTCGCGCGAAAACGTATTGCTTCGAG 70062 31 100.0 34 ............................... GGACGGCGAGTATGCTCACGTCGATCGTGACATG 70127 31 100.0 33 ............................... TACCACGCGAAAACGCGTGGGATTCTGCGAGAG 70191 31 100.0 33 ............................... CACGACCACCATCCCGGCGTTGCGGACGATTAT 70255 31 100.0 35 ............................... GAAGGGGGTGTACGACCTGTGGGAGTGGCTCCAGG 70321 31 100.0 33 ............................... CGACGGGTCGCTGCAGGAGTCGGTGCTGGAGGA 70385 31 100.0 35 ............................... CGCGGCCTCAACCTGATCCTCGGCGCGACCAAGGA 70451 31 100.0 35 ............................... CACTCGGCCCTGCTGCGCGTGGCGCGGCACATGGA 70517 31 100.0 32 ............................... GCCTCGACAACGTCGGCGTAGGAGTCCACGGA 70580 31 100.0 33 ............................... CACGCGGTAGTGCATGGGGTGCACCGTGCTGAT 70644 31 100.0 34 ............................... GCTCCGTCGTTTGGCGTTGTCGGTGCGATTGCGG 70709 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 24 31 99.9 34 GTTTCAACCCGCGAGCCCGTGAGGGCTCGAC # Left flank : GCACCGTGGCGTCCGCTTCGCCAGGCACGCTCACCTTGAGCGTGTCGCCGTCGACCACGCGCACGACCTGGGCTTGCTGGAGACCGTCCCCTACGGGGGCGATAGTCGCTTGGCCGTCTCGGCCCGGCGCGGCATCCTCCGCGACCCCGCCGCCCGCAGCGCCGAACCATCCAAGCGCGGCACCGATCACGAGCACGGCCGCAATGGCGAGGGCGGCAAGCGGGTTCTTCCGCGCCAACCGCCTTAAGGCGCGCCCTGCCTGCTGCTTCACCGACGCCATGGATCCCCTTCTCCCGTTTTTCTACGAACGAGAATTATAGACCAACTGCTTGGAGATCGCCGCAAGCTCCAACCTTCGCCGAGCCTCCTTGCAGGTAGCCGGGATTGCGCTAGCCGGCTCGCCGCTCGTCGCTACCGCCCGTCGAGGGGTGCGACATAGCATGTGCGCGGAGTCGGGCGGGCGTACACAGCTGGTCGATGCCGGCTGCTGCCCCCATGAG # Right flank : CTGTCAGGATATGCATATATACGTATATTCTGATTATCATATTCACATTAGACAATCAGTCCGCCCCATGAACAGCTATCAGCGGGCTTATGAAGCTTAAAACCTGCGCGAACCTCCCGAATGGCGCGCCATCGCTTGGGGTTCGCGCAGCACGCAATAGAGCTTCTACATTGTCAAGGTGCGCATTTCCTCTCACACGCATAGGAGCCCTTCCGGGTCATAAGCCTCCTTTGCTCCCACGTGCTCGACTTTTCGCTTCCAGTTCTTCCCGAGATTGTAGAACCGTAGGCTGTCACGCGTCAGGTCGGCCGCCTTCATCAGCTCGCTCTTCATTGTCTCAAACTGCGCCGGATCGAGCGAACATTCGAACACCGAGTTCTGCACGCGTTGGCCATACTGCACGCAAATCTTCGCAACCCGGCGCAACCGGCGAGATCCCTGCGGGCTTGCCGTTTCCACATCGTACGTAACGAGCACGTACATCGCTACCTCCAAATGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCCGCGAGCCCGTGAGGGCTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 81514-80294 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOD01000005.1 Gordonibacter urolithinfaciens strain ResAG-50 ResAG50_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 81513 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 81447 32 100.0 34 ................................ CTGGACCGGGTGCTGCTGCACGAGGCGGCGCACT 81381 32 100.0 34 ................................ TCCATGTGCCGCGCCACGCGCAGCAGGGCCGAGT 81315 32 100.0 34 ................................ ATCGACCACATCTATCAGGCGTCCGCGCAGACGC 81249 32 100.0 33 ................................ CTCTTGAGGATCGAGCGGTAGGTCGAGCCGTGC 81184 32 100.0 34 ................................ TTCTTCGATATGCTGGCCAAGACCGCCCACAAAC 81118 32 100.0 33 ................................ ATTTCGCCCTCTCCGTTTCCTCGTGTCACGCCG 81053 32 100.0 33 ................................ TCCGTGTCGTACCGCTTGCCGTTTATGGTCTTG 80988 32 100.0 33 ................................ CAATGGACTCGTACTTTGATAATCACGCCGGAC 80923 32 100.0 36 ................................ AACGAAGCGGTTGACGCCGTTGTAGTTAACGGGGAT 80855 32 100.0 34 ................................ CACAGGCTGGAGCGGCCTGCGGTGAACTCCTTGG 80789 32 100.0 33 ................................ TCTCTGCTCGAAGCGGGTGCCCAGGGCGGCGCG 80724 32 100.0 35 ................................ TCCTTGGTGGCCGCAGGAATTGCCGCCGGCTGGAT 80657 32 100.0 34 ................................ TCCATGGTGACATGTTGGTGACACCGGGTAGGCA 80591 32 100.0 35 ................................ CACCAGCCCGTGCGCTCGCCCGACGAGGTGGCGCG 80524 32 100.0 34 ................................ AAAAAAGTATCAATACGGAGAAGGTTACACATGG 80458 32 100.0 34 ................................ CGCGGTATCGGCGTCTACGTGGACGAGGGCCTCG 80392 32 81.2 34 ......TT..TCG..................C TCGAAAGAGAGCGCCGAGTGGTAGCCTGAGCCGT C [80378] 80325 32 81.2 0 ..T..A...TTCG................... | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.0 34 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCATCGCGCCGAGCCCGCTCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGAGGTCTCGCGCGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGCCCAGAGGGATAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : GCCGCTGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGCTGTGAATTGGGTGCGCACCGTAGCGGTATCGCGCTCTTAGCACCGGTTTCGACAGACATTTGCGTCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAATACGGTGATCTTTCAGTTGAGGTTCTCTCGGCAGACTCGTCGGCAAGTAGCCTTCTTCCGTTGTCGTTCGATGGAGAGCCAACCGACGAGCGTCTCTTCGAATGGATTCGTCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGCAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30908-32520 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPOD01000039.1 Gordonibacter urolithinfaciens strain ResAG-50 ResAG50_contig_039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30908 36 100.0 30 .................................... TGCATGTAAAGAATAATTTCGGAGTCATTG 30974 36 100.0 30 .................................... CCAGCACGCCGGACGCCAGCGCGTCCTGGC 31040 36 100.0 30 .................................... CAGCGCCGACGAGAAGGAGCTCACGGACAC 31106 36 100.0 30 .................................... AACCGTCGTGCCCCTTGAACACGATGATGG 31172 36 100.0 30 .................................... CATGGTGGGCAACGACCTCGTGCTGGGCCG 31238 36 100.0 29 .................................... TAGGCGAGACGGTGTACGCGCTGCAAGGC 31303 36 100.0 29 .................................... TTGGAATATGCACAAATGCCGATCAACAT 31368 36 100.0 30 .................................... CCTTGGCCGCAAGGCCAAACGCATCGGATA 31434 36 100.0 29 .................................... TTGCGCAGTAAGGCACACCGCTGGTCCCG 31499 36 100.0 30 .................................... GATACCCTTTGCTGGGATGATTATATATGG 31565 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 31631 36 100.0 30 .................................... CTTCCTCGGCATCGAGAATGCGAACACCGA 31697 36 100.0 30 .................................... GGCAGAGAAGTACACGACAACGGTCAGTGC 31763 36 100.0 29 .................................... AGATCGACGAGGGTCGCCGCTGGATCTAC 31828 36 100.0 29 .................................... TCAAAAACGGAATCGTCCCTGTCGTGAAG 31893 36 100.0 30 .................................... GCCGGGGCGGCAGCTTCGGCCTTTTCTATT 31959 36 100.0 30 .................................... CCCGACCGAAAGGCCCAGTACATTCAGGCG 32025 36 97.2 29 ..........G......................... CCGAAAAGCTCCGGCTTATTGCACGAGGC 32090 36 97.2 30 .........T.......................... TAAACGGTTTGAAGGACGGCATCATGAGCG 32156 36 100.0 30 .................................... AAGCTCGCAAAGCTCGTCAGCGGAATCGCA 32222 36 100.0 30 .................................... GCCCGAGTTCTACGCCAACCGCTACAAAGA 32288 36 97.2 29 ...................T................ CCTCGCGCACGTACTCTCGCCTGTCAATG 32353 36 91.7 30 ..............G.......G.....G....... AAGCGGCTGATGCGCTCGTCGTATGTGCTG 32419 36 75.0 29 ..A..A.TA.G.....G...C.....T.......G. TCATCTTGGGCGCGTAGCCTTCGGTAGCC 32484 36 77.8 0 ..........G...G.TGG.G.........A....A | T [32517] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 97.4 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGCTTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAAGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTACGCTTTTGAAGTACAATGGGAAATGCGAAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGAAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATATTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCGCATTGACGTGCATTTTCTGCAATCATGAAAAGTTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCAACG # Right flank : ACGAATAGGGTGATCGACTCGCGGGCATCACTTTATTTCGGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGAACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGTCGCAGATCCTCGAGCGGCTGGAGGCGCAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCCTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTATGCGCTGGAACGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGATGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAGAGCGACGCGTTGGTCGAGGCCGTGAAGAGGCTCGCGTCCGCCCGCCAGCGCGCGCTGCTCGACAAGCGCCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //