Array 1 226867-229516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTAD010000003.1 Klebsiella pneumoniae strain KP1-080 KP1-080_c3_length_323499_cov_48.633065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226867 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 226928 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 226989 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 227050 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 227112 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 227173 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 227234 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 227295 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 227356 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 227417 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 227478 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 227539 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 227600 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 227661 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 227722 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 227783 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 227844 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 227905 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 227966 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 228027 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 228088 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 228149 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 228210 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 228271 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 228332 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 228393 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 228454 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 228515 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 228576 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 228637 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 228698 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 228759 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 228820 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 228881 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 228942 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 229003 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 229064 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 229125 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 229186 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 229247 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 229308 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 229369 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 229430 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 229488 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5906-6904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTAD010000048.1 Klebsiella pneumoniae strain KP1-080 KP1-080_c48_length_12020_cov_335.933350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5906 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5967 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 6028 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6089 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6150 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6211 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6272 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6333 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6387] 6387 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6448 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6509 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6520] 6571 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6581] 6634 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6695 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6755 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6816 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6877 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //