Array 1 172793-173858 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSIP01000005.1 Escherichia coli strain TzEc011 NODE_5_length_294518_cov_28.2259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172793 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 172854 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 172915 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 172976 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 173037 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 173098 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 173159 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 173220 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 173281 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 173342 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 173403 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 173464 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 173525 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 173586 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 173647 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 173708 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 173769 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 173830 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199560-200930 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSIP01000005.1 Escherichia coli strain TzEc011 NODE_5_length_294518_cov_28.2259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199560 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 199621 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 199682 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 199743 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 199804 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 199865 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 199926 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 199987 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 200048 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 200109 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 200170 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 200231 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 200292 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 200353 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 200414 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 200475 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 200536 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 200597 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 200658 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 200719 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 200780 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 200841 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 200902 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //