Array 1 379-1079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIQ010000165.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 379 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 440 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 501 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 562 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 624 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 685 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 746 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 807 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 868 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 929 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 990 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1051 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIQ010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 118 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 179 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 240 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 301 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 362 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 423 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 484 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 545 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26122-27919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIQ010000013.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26122 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 26183 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 26244 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 26305 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 26366 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 26427 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 26488 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 26549 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 26610 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 26671 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 26732 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 26793 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 26854 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 26915 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 26976 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 27037 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 27098 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 27159 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 27220 29 96.6 32 ...C......................... GGCACGGAATTGTTATGCTGTTCCCCTGACCG 27281 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 27342 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 27403 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 27464 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 27525 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 27586 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 27647 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 27708 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 27769 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 27830 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 27891 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSIQ010000316.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 93 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 154 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTATAATTATTTATTGAAATATCATTCCG # Right flank : GGCGCACTGGATGCGATGATGGATAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //