Array 1 258784-258932 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGK01000013.1 Gilliamella apicola strain wkB178 Gilliamella_apicola_wkB178_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 258784 29 100.0 31 ............................. GTTGCAAACCCAATAAATTTATTGTCGAATT 258844 29 100.0 31 ............................. TTTAAAAGTTCATCCTCTAAAATGGATAAAG 258904 29 79.3 0 .....................A.TTCT.T | ========== ====== ====== ====== ============================= =============================== ================== 3 29 93.1 32 GTTCACCGCCGTATAGGCGGTTTAGAAAA # Left flank : TCCATACTTTACCAGTTGCTTCTGCCATTGTTAATGCTTATTCATTTGGATTTGATGAATTTAAAGATCAAGCTACGGTACAAACTGAACAATGGCTGCATAAACTGATTGATTCAGTTAACTTACCGCGTGAAAAACTATCTTTTTCCATCGCCTTCGGCAACCCACGCGATGAAATTCTTGCTATAGCCAACGAGATTGAACCAGACCTCATTATTATCGGTTCGCGCCGCCCCAATATTTCAACCCATCTTTTAGGCTCAAACGCTGCCGGAGTAGTGCGTGGCGCTAAAACCTCAGTTTTAGTCGTACGCTAGGTTCCATTACCAAGACCGTGATTTGTTGTAAACCAAACACGGTCACCGTAACCCTTTTTTATACTTAATTTTAAAATTAAGTATAAAATCAATTAATTTCCAATATAGATAAAAAAAGGGTTTGCTAATCAAAAATCCTTGTTTGCCTTTTGTTAAACAACGTTTATAGTATATACGAATCTA # Right flank : TTTTAAATGTTTGACAATAAAACAGCAGTGAATTTGCTTGTTACGTTTAAAATCAAGGGACAGGGTTTTGCTGGTGATATCTTGATATGACAACCCAAGATTGTGCATGCCAGTGTCATCCATTTTAAAACCACGTTTATTGTTGGAAAACACAATAACGCCATTCGGTCTTAATAACCGTTTTAAATCCGCCATTAATTTTAAATGATCGCGCTGTACGTCAAAGGTGTCTTGCATCCGTTTGGAATTGGAAAATGTCGGTGGATCGATAAAGATTAAATCGAATTGTGCATCACTTTGAGCCAGATAGAGTAAGCAATCAGCTTGAATCAAACGGTGTTTGTTGCCAGTTAAACCATTTTGTTTTAAATTGCGATCGGCCCATTCTAAGTATGTTCGTGACATATCGACGGTCGTGGTTGATTTTGCTCCGCCAAGGCCAGCATAAACAGTCGCACTACCAGTATAGGCAAACAGATTTAAAAAGTCTTTTCCGGCAC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 552553-553962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGK01000013.1 Gilliamella apicola strain wkB178 Gilliamella_apicola_wkB178_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 552553 28 100.0 32 ............................ AGATTTAGATAAAAAAATAGGTGGGCTAGAGC 552613 28 100.0 32 ............................ TTTTGCTGTAATCTCTTTGGTTCATCGGCACG 552673 28 100.0 32 ............................ TGACATAGAAGTATGAGCATCACCGCCACCGC 552733 28 100.0 32 ............................ AGATTAAATGTATTACTGACCTTCAAAGAGCA 552793 28 100.0 32 ............................ AGAATCAAATCCCTTATTACCTCTAATTGTTG 552853 28 100.0 32 ............................ TTGAATGATTTTAGTAATGCCGTTAGCAATAA 552913 28 100.0 32 ............................ TTATCGGTGAAATAACTCTTACGGCGAGGTGC 552973 28 100.0 32 ............................ AGCGAACTCCACGGTGACTATACCCTGTATTT 553033 28 100.0 32 ............................ TTTCCGAATGATTAACTTCAACTCTATAACCT 553093 28 100.0 34 ............................ TACCTTATAAATAGGTGAATCACCTAGTTTAACC 553155 28 100.0 32 ............................ GACCATGAAACGGTGATTTCTTCATTTTTAGG 553215 28 100.0 32 ............................ ACAAAACGAACAACAAGAACACATGGTTCAAA 553275 28 100.0 32 ............................ GAATCATCTAATGTAAATACCGATCCGAAACA 553335 28 100.0 32 ............................ TTTAACTCCTCATCAGAATAACTATTTACATC 553395 28 100.0 32 ............................ AATTCGTTTAAAAAAATCGGTGGCGGTGGCCT 553455 28 100.0 32 ............................ ATCCAAATTTTAGGTAGTCAAAGAAAATTAGC 553515 28 100.0 32 ............................ AATTGGAATTCTTCCAATTTCAAAATAGTCAT 553575 28 92.9 32 C...........G............... ATCCATAAAAACTCACAACCACAATAAAAAGT 553635 28 92.9 32 C...........G............... CTCAGGAATGGAAACATTAAAGGACGGGATAG 553695 28 100.0 32 ............................ TGCCCAATCAGGTTTAGTTGTTTCGCCGTAGT 553755 28 100.0 32 ............................ GCATTAGAACACCTCTCCAGTGTTTGATTTGC 553815 28 96.4 32 C........................... AAAACTAAAGCACTCTATATTGTCATCATTCT 553875 28 96.4 32 C........................... AAGAGGGGAAAAAAGCATTTAAAATATAGTTA 553935 27 96.4 0 .......................-.... | T [553961] ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.0 32 GTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : CTCGCAGATCTCAAACAAAAATCGACAGTGACGGATTATGCTTTAGCGTTACCCATTACACTGATACCAACCAGTGTAACAGGTTACCTACGCTTAATTAGGGTAAACCCAAAAGGGCAAAGTGCCTTAAGGCGTGCCGAAAAACGGTTAACTGCCCAAGGTAAATGGTCTGATGAAGTAAAAAATAAAATGATAGCAAAATGGGGTAGTGTGAATTTAGCGTATCCGCATCTACATTTTTCCAGTAAAAGTACGGGTCAACAATTTATCATGTGGTTAAAACAAGAACATTGTACAGAATCGGTATCGGGTACATTCAATAGTTATGGACTAAGCCAAACAGCAACCGTCCCTAATTTTTAATTTACCAACCCTTTTTTTGAGGCTGTTTTTAACTAATTGATTTTTAAAATAATTAAATAAAGCTCAAAAAAAGGGTAAAAATGATAAAAAGTAATGTATGCTCTTTAACAATCAGGAAATTCTGCAATAAAATTCTA # Right flank : ATTAATTCATACCAATAATTTTATTATTATTTTATTTAACTAGAGCGCAGTGCCTTTTTTAGGGATCACTAAATTGCTGGTATCAATGCCTTCAATTTGTAGTAATTTGATTTTTTTATCGATACCGCCAGCATAGCCGGTTAGGTTGCCATTGGCGCCAATAACGCGGTGGCAGGGGATGATGATTGAGATGGGATTATGCCCGACAGCACCGCCGACTGCTTGGCTGGACATTTTGGGTAAGTTATATTGCAAGGCGATTTGTTTAGCTATATCACCATAAGTGACTACTTGGCCATAAGGGATTTTGCATAATAATTCCCACACCTTTTCTCTAAATGGTGTGCCTTTGGGGCCCAGCGGTAATTGCTCAATAGTCATTTTTTTGCCAGCAAAGTAGTGATCTAACCATCGTTTGGTGAGATTAAAAACCGGTAGATTTTGTTTTACAATCACTTTGTCGGCGACTATAGAACCAAAATGCTGTTGCCCTTCAATCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //