Array 1 459219-458529 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQI01000002.1 Haloferax sp. Atlit-48N P_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 459218 30 100.0 35 .............................. TCCATCGGGCCAGACGAAGTCGCGGACTTTGACCT 459153 30 100.0 34 .............................. CACTCTCGCGGCCGCTGAAACAAGCTGTCCGATA 459089 30 100.0 35 .............................. TGGTGGACAATCCCCGTCGAAGCCGGCGACACGTA 459024 30 100.0 34 .............................. TCGGGGTCGAGCGTTTCGACGGTGCGGAACTCGT 458960 30 100.0 37 .............................. GTCCTCGCCGGTGGTCGACGACGGCCGGAAGTCGATG 458893 30 100.0 36 .............................. TCCGATGACGGCAACTCCCTGTCCGCACTCGTCACG 458827 30 100.0 37 .............................. TCTGGGCTGTTGTAGGTGCATCGGAGTCGTTGACGTA 458760 30 100.0 36 .............................. ATTGCTAACCCAATACTTAACTCTGGGTCAATATGG 458694 30 100.0 38 .............................. CTCATCACACGCGGCAAGTGCGTGGTCGATGGCGTCCA 458626 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 458558 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.9 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGATCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGTATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 178089-175693 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQI01000004.1 Haloferax sp. Atlit-48N P_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 178088 30 100.0 41 .............................. GGGTGTGAGGGTCCCGGTGAGAAGATCAATCTTGAAGACGT 178017 30 100.0 35 .............................. GTGTGAATCAGTAGTACGTCGCCGACCGGAGACGC 177952 30 100.0 37 .............................. GACCGAGAGACGGCTCGGCTGTCGTGGTCTGAGTACG 177885 30 100.0 37 .............................. AGCCCCAGAAGGGCGAGCCACGCCACAACGAGGAGCA 177818 30 100.0 36 .............................. GCTTGCAGAGTGATTGGAGACGGTATAGACTAACTC 177752 30 100.0 35 .............................. TTGTACATCAGCTCGTAGACCTCGTTATACGGGAG 177687 30 100.0 37 .............................. CGCTCGCTCACGAGTGACACGAAGAGCCGGTACGACG 177620 30 100.0 37 .............................. GGTGTCGGCGGCGGTGAGAACGAGGCGCTCCGGCGGA 177553 30 100.0 35 .............................. GACCATCGTGAACATGTCGGCGAGCATCATCCCCA 177488 30 100.0 35 .............................. TCTTGCAACGCCGACCAATGTCCGCAAGAAGTCCG 177423 30 100.0 38 .............................. ACTGACTGGGTCGGCGTCGAGGTCGTCGACGCTCATGC 177355 30 100.0 37 .............................. CGACGACTCTCGCCAAACGTCGAGCACTCGCGGCGCT 177288 30 100.0 37 .............................. TTGTGGAAGACTGTCCACATCCCGGTCTGTGCCGAGG 177221 30 100.0 35 .............................. TTCTCGTGTGTCGAACCCGTCGACGAACGACGCCA 177156 30 100.0 37 .............................. GCATACGGTCGACCCGCACCTCAGCAACGGCTTGTTT 177089 30 100.0 35 .............................. CCACAGACGCCGCTGGCGGGCGGTGCTGGCGGGGA 177024 30 100.0 35 .............................. GGTCGCGCTCGTAGCAAGAGTCACCCGCATAGGGG 176959 30 100.0 34 .............................. TCCATTCGATATTTCAAATCCGTCCCCTCCCCCT 176895 30 100.0 34 .............................. CGCCAAATCACATCCGCTCGTCTCTCCATCACGT 176831 30 100.0 36 .............................. GCATCCGAGAGACGATTGCGTCATTTAATATCAACG 176765 30 100.0 38 .............................. GACCGGCGCGTCGCAGGTCGGACACGAGACGGAGCCGG 176697 30 100.0 35 .............................. GTGTACGCGGGAGCTCTCGAGCGCGTCGTAAGCGT 176632 30 100.0 34 .............................. ATCGACGAACACCCCCGTCTGCCGCGACGACCTC 176568 30 100.0 36 .............................. GACCTGTTCGGTGACGACCGCGACGTCGTCGACGTC 176502 30 100.0 34 .............................. GTCGGGTCAAGGTCCCCAGCCGAATACGACGCAT 176438 30 100.0 35 .............................. GCCGGGGTCAGAACCCAGTACGAACTCACCGGCGT 176373 30 100.0 37 .............................. GTCGAACCAGTAGGCCGTGTTGTCGACGAGTTCGTGA 176306 30 100.0 35 .............................. GGGAGTTTCGGGAGTCCTACCTCGAAATTCCACGC 176241 30 100.0 35 .............................. GGGGTCGGCCTCACGCCGGAGGGCGGCACGGACTT 176176 30 100.0 35 .............................. TGTTAAGATTGAGGACGGGTGGTACCTGAGATGTA 176111 30 100.0 37 .............................. CTATCGTCGAGGTCGGTTACGTCTGCCGAGTTTGCAC 176044 30 100.0 37 .............................. ACGACTGTTTCCTGTGCGCCGAATGCCGGTTTCAGGG 175977 30 100.0 96 .............................. GCGTGTGTAAGCACCCAAATCCAGACGCGGCGCGGGTTTCAGACGAACCCGGGGTTGAAGCGCTCACCTCGGCTCTGCCGTCGACGAGGACGACGA 175851 30 100.0 35 .............................. TGCATCACCGCGACGTCGCCGCCGCCCTCGTAGGC 175786 30 100.0 34 .............................. GGCACCTACGACCGCCGCTACAACGACGACCCGC 175722 30 83.3 0 .......G.......G......A..A..T. | ========== ====== ====== ====== ============================== ================================================================================================ ================== 36 30 99.5 38 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAGCTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTCCTCGAAGGCGAAATTTCAGAGGGTGATTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATTATCTACGAACTGTCTTCTGACACACTTCTCAACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGAGTTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCACCCCTCAGAGAGTCTGTGTCCTCGATATCGGACATG # Right flank : GAAAACTCGTCGGGACGAAACCACGCGAAAGAAACAGAACCCGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 190624-187629 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQI01000004.1 Haloferax sp. Atlit-48N P_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 190623 30 100.0 31 .............................. AGGCGTTCGAGAGCGCGATTCTCGACCTCGC 190562 30 100.0 36 .............................. GTCTATCAGACTGTCGTCAACAACGACGTGCATGCG 190496 30 100.0 34 .............................. TCGTACCCCGACCCCGACATCGACGCGCTCGACG 190432 30 100.0 33 .............................. GCGTGACCGAGCGAATTGTCGACGTGAGGGAAG 190369 30 100.0 36 .............................. GTGGACGAGACCTTCTACACGCGGATGGACGACCGC 190303 30 100.0 35 .............................. GGAACTAGAGCGCTCGCCAGTCAGCGGGTTGACGA 190238 30 100.0 37 .............................. TCGCTCGTCGCTTGTCGCTCCTGTTGCGAGCCTTGTT 190171 30 100.0 36 .............................. CGCGCGCTCGAACCCGAGACGTGGGAGAAGGTGCTC 190105 30 100.0 38 .............................. GTCGTCGTTGAACGTGCGGCCGTCGTCCTCAACAACCA 190037 30 100.0 37 .............................. ACGGCACGCTGCCAGTTGGTCGCCATACCGGACTATC 189970 30 100.0 37 .............................. GACAAGTGGGAAATCGACAGCGTGACGTTCAAGAACG 189903 30 100.0 36 .............................. GTGCTCGGTCGTGAAATCAACCTCTGCGATTTCGTT 189837 30 100.0 37 .............................. GACAAGTGGGAAATCGACAGCGTGACGTTCAAGAACG 189770 30 100.0 36 .............................. GTGCTCGGTCGTGAAATCAACCTCTGCGATTTCGTT 189704 30 100.0 37 .............................. GAAACGCAGGGTTCGGACCAGAACATCAACGTGAGTC 189637 30 100.0 37 .............................. CGTCGTCCTCGACGCTCTCAACGCCGTGATAGACGGC 189570 30 100.0 35 .............................. TGCCGGGTTGAAGCGCGCGCCGTTGGGCCGGATGG 189505 30 100.0 36 .............................. TTAGTCGTCGAACCTCCCCTAAGGGGTCTGAAGACG 189439 30 100.0 36 .............................. GCTCACGCCGGACCCTCCTCGGCCGGGTCATGCATC 189373 30 100.0 37 .............................. TTGCGCGAAGTCGTCGTTGACCCGGACCTTGAGGATG 189306 30 100.0 36 .............................. AAGTGCCTACGGCGGGAGTGGTCTCGACGACAACGT 189240 30 100.0 35 .............................. GAAGACCTGGACCTCACCGCCGAGGACGTCGAGGC 189175 30 100.0 35 .............................. GTGCTGTTCGACGCGGACGGGTCGCCGGTCAACTA 189110 30 100.0 37 .............................. GGTATAGCTATCGCCAGTCGCCGCCGTTACGTCGCCC 189043 30 100.0 37 .............................. TACAACGCGTTCGCCTACGAGGGCGGCGGCGATGTCG 188976 30 100.0 34 .............................. CGCGCCGCCAGTCTTGCGTACCTCAGGCATGATT 188912 30 100.0 37 .............................. CCGTAGATGCCGTTCGAGACGAGGTCCATCCACTCGG 188845 30 100.0 36 .............................. GCAGAACGACCAGACGCAGGCGTGGCCGACCGGGTC 188779 30 100.0 35 .............................. TCCGTGAGCAGGGACGAGGGCCGGACGGCTACCGA 188714 30 100.0 34 .............................. GACGAGGCGAGTTCGGAACTCACGGCTCAGAACG 188650 30 100.0 37 .............................. CACTCACGCCTCCCGGAAGGCCCGGTCCCGGACGAAC 188583 30 100.0 36 .............................. CCGAGGATGCGCCCATCCCCGACGATATTGCCACGT 188517 30 100.0 36 .............................. ATCGTCTCCGAGGAGTTCACGAACGCGTCGACCGGC 188451 30 100.0 36 .............................. CGCACCGGGCCGGTTGTGTGTGCCTGCTCGGCAAAT 188385 30 100.0 38 .............................. TCCTGTTGCCACTCGGGTACGTTATGCCCATAGCTGGG 188317 30 100.0 38 .............................. TACTGCGAGCTTTGCGAGGCCAACGTCGACATGTCGGG 188249 30 100.0 36 .............................. CGTCGACGAGTCGCGGACCTCAAAACGCGACTCGTC 188183 30 100.0 36 .............................. CTCCCACGTCTCCGATGGCACGAATCGGTAGACGTA 188117 30 100.0 36 .............................. CGCTGTTGCTGTAAAACAGCTTGCAGTGCGTGCAGC 188051 30 100.0 36 .............................. CGCTGTTGCTGTAAAACAGCTTGCAGTGCGTGCAGC 187985 30 100.0 35 .............................. GACGAAGAGACACCAAACGATGACGGTGGCCTCGA 187920 30 100.0 35 .............................. CCGAAGCGCAGGCGGTCGCCGGCGCTGACGAGATG 187855 30 100.0 34 .............................. GATGACTTCGAGTCCGAACCCCGGCATTACATCG 187791 30 100.0 36 .............................. GCAGCCTCGTCGGCGGCGATGGTCCGGATGGCGCGT 187725 30 100.0 37 .............................. TGGGTCGAACTCGCAAATGACGGCTCCACGTTCACGC 187658 30 90.0 0 ...............C..A.C......... | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.8 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGTCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGATTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGCTACGCCCGTGATTTCGGGACG # Right flank : AGAGAAACCACCCAACGAAAACAATCACCCGAACAGTCAATCCTGGTTTCAATTATTGCTGACCCGTCAAACTACGGGCATAATTTTATGTCGGGGAGCAAACAATCACAGGTACAACAATGAGTAGAGAAGGAGGTATCGGATAACGTGCGAATCATGGCACACTTATCAGCGCGTTCCGATGCTGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGGCCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGGTTCGCTTACTCGAATCCGTTTCCGCCTCGAGATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAGGAACTACTCGCAAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCAGGGACCAGGGGGACGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //