Array 1 183197-181866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVJ010000006.1 Listeria seeligeri strain FSL L7-0723 NODE_6_length_193586_cov_29.733077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 183196 29 100.0 37 ............................. AAAATTTTCCACCTTTCTAGTTGTTATTGATAAAAGC 183130 29 100.0 37 ............................. AAAGCCGTTTACGATAAGTATACTACTTGGTACGAAC 183064 29 100.0 36 ............................. AAGACTTTTGAAGAGTTCAATACGTATGCCATTGTT 182999 29 100.0 37 ............................. GAGGGTAAATATTCACACTTTTTCCTAGAATCAAATT 182933 29 100.0 35 ............................. GTGTAAGAAGGCGCACCTGCCGTAATCGTAACTTT 182869 29 100.0 36 ............................. ATCAAATACGAAAATGGAAATCAACAGAAAAATGGT 182804 29 100.0 36 ............................. ATGGTCAAAGCCAAAAAGTTTGCTAAATTTGAAAAA 182739 29 100.0 35 ............................. GATGCCGCTTTTGCTGTTTGTGAGATAGGTGAAAT 182675 29 100.0 37 ............................. TAATGAATACGGGCATTTTCACAAAGATATAAGTAAA 182609 29 100.0 35 ............................. GAGGGAGAAGATGAGCTACTAAAGAGTCAAGCATT 182545 29 100.0 37 ............................. AGAGCTTATAGAGACACTACAAAAGCACAAAGGTCCT 182479 29 100.0 36 ............................. ACAAAAGAACGAGAAGACTTATATGTAAATCCTACG 182414 29 100.0 36 ............................. TAATTTCGGCCTCGGTCATACCCACTTGCTTTCCTT 182349 29 100.0 36 ............................. GAAGTTGATCAAGATATAGATTTGTATACAGATTCT 182284 29 100.0 34 ............................. CGCCTTGCCCTCCGCCTGTGTTTGTGTGTAATTC 182221 29 100.0 36 ............................. ATTGTTCGAAAAAAATTCAATTGTTGAGTAAGGACC 182156 29 93.1 37 ........................GG... TCTCCCGCTTTGCCAAAAGAACTATTATAAGGATCAA 182090 29 100.0 37 ............................. CATCGTCGCGGCTCGATAATGTGGGACACGGGAGGCG 182024 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 181959 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 181894 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAATACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAAAGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAAGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 193539-192989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVJ010000006.1 Listeria seeligeri strain FSL L7-0723 NODE_6_length_193586_cov_29.733077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 193538 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 193474 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 193410 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 193345 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 193282 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 193214 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 193148 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 193081 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 193018 29 86.2 0 ........C....C..A...........G | T [192991] ========== ====== ====== ====== ============================= ======================================= ================== 9 29 97.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TGAAATGTAAATTCGATTAGCGCAAATATAAGCTTCACACCTGCGTC # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATATGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1184-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVJ010000007.1 Listeria seeligeri strain FSL L7-0723 NODE_7_length_165320_cov_29.619397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1183 29 100.0 37 ............................. TTTCATGAGCCAGCCTCCTTTCTACGCATATTTTTCC 1117 29 100.0 35 ............................. CAATACAGCGAAGTTCCGTTTGAAATCATATTAAG 1053 29 100.0 37 ............................. ACCTGAGAAATTCACATTGGAAGAAGAAGGTTTGGAA 987 29 100.0 37 ............................. AGAAGGGAAATTGCCCCAATATGGTGATACAGTATCA 921 29 100.0 38 ............................. GCAACACCCACGGTTAAAGCTTGTTGTATGTCCTAAAA 854 29 100.0 37 ............................. TACATTAACACTTTTAACACGCAGAAAGTAACACAAC 788 29 100.0 36 ............................. GAATTTGGCAATAATGTACTTCCCAAAACAGCTAAT 723 29 100.0 37 ............................. ACACAGGTACGGTTAATATTATCGGTTAACGAGTATA 657 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 593 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 527 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 462 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 399 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 333 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 269 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 204 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 140 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTTGTTTTAACTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 8084-7406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVJ010000007.1 Listeria seeligeri strain FSL L7-0723 NODE_7_length_165320_cov_29.619397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 8083 29 96.6 36 ............T................ TAAATCAAAGTTTTTATGTTTGCGGTGTGAACGAAT 8018 29 96.6 34 ............T................ ATGCAAAAGGTTACTGACGAGTTCACTCAACTTA 7955 29 96.6 37 ............T................ ATTAATATTTTCTTTTTTTTATCCATATATCATTCTC 7889 29 96.6 35 ............T................ CGTGCTATTACGAATTAAATTATGACTAGCTCCGT 7825 29 100.0 36 ............................. GCAGCTGTAGGTGGTTTAATTAACAAAGATGATTTA 7760 29 100.0 36 ............................. TGTTGCCAGCCTGCTGCAACTTCTAATTGACTTGCT 7695 29 96.6 37 .........G................... AAATTTACATTGTTGGCGCGGCTCTTGAACAATCTTT 7629 29 100.0 36 ............................. GATTTATTCACTAGCAAAAAAATGTCTTTTTGCCGA 7564 29 100.0 36 ............................. TTAATTATCCAGCCATTCAGAGTTTCTTAAATCCTT 7499 29 100.0 36 ............................. CGAGAACAAAAACTATCATAAATATGATATAATTAT 7434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.5 36 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCATTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGTTTTAAGAGTTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCAATTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //