Array 1 15262-10242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWC010000217.1 Halomicronema sp. CCY15110 CCY15110_217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 15261 36 100.0 37 .................................... GAAAAGTCGATGCGATACGGATCACCATCAACGGTGA 15188 36 100.0 36 .................................... CAGTACTTTAACCAGTGGTACCCTATTTAATAATTA 15116 36 100.0 35 .................................... TTGACGCAAACTCTGCAAAGCTGGAAAGAAGCGAC 15045 36 100.0 38 .................................... CTCACGGTCTATCTGAATAGCGAAGCCACGCTAGACGA 14971 36 100.0 37 .................................... TGTAAATGATTAGGTGATCGAAGCGACTGGCTTCTTG 14898 36 100.0 34 .................................... TCCTGAGAAATCGCCGCTTGCAACTGCCCGTTAT 14828 36 100.0 36 .................................... ACCTGATTTGGTGTGGGGTTTGTCAGGCATTACTTT 14756 36 100.0 38 .................................... TTCGGTTAGATGTTCCCACAACCCTTTGCGCGTCTTGG 14682 36 100.0 35 .................................... TTGAGGTTAGAATCTCAGGTATTGAGAAACGTCAA 14611 36 100.0 38 .................................... TCGAAACGCATTGAACTGTCTCGCGGTGCCCAGGTCAA 14537 36 100.0 37 .................................... ATAGTCAAATCAAAAGGGGCGATGAAAAATGCTTTAT 14464 36 100.0 36 .................................... TACAGATGCGACGATGGCGGCGGCGGTTCTTTTTGG 14392 36 100.0 39 .................................... TGAGTAACCTTGGCGGTCTCAAGACCTCCTAAACACGAG 14317 36 100.0 38 .................................... TAATGCCGCCACTGATGGTCGGTACTTATTCCGCGTAA 14243 36 100.0 38 .................................... TCACGATAAAAACCGCACAACGCTGCTCGGTCAGCGTC 14169 36 100.0 37 .................................... TTGTAAAAAGAAACCGATAAAATGCCGCCGTTTGGAA 14096 36 100.0 37 .................................... TCTATATAAATCTCAAGAGCCCGTGAAGAGCTTCCGC 14023 36 100.0 34 .................................... CCCTGCGCGATCGGCGCTTGCAAAATTGCTACGC 13953 36 100.0 41 .................................... GCGGACTTGTTTTACGCCCCGCTGTCCCCATCGCCCAACAA 13876 36 100.0 37 .................................... ATCGTGGCGTCGTCAGTTAGCGACAAATCGCCGTTCG 13803 36 100.0 37 .................................... TTAGAGACATCTGCGGTACCGCCACCACCTAAGCCGC 13730 36 100.0 34 .................................... GTACCGCAATCCCGAGGTTCCTTCATGATTTTGT 13660 36 100.0 37 .................................... TGAATCTCAGTAAGTACATCGGGGACTAAACCCTCAA 13587 36 100.0 38 .................................... TTTGATATTCCCGAAGCGTATATTTACCTTTGTTATAA 13513 36 100.0 36 .................................... CGTTGGCGGTCAACTGGGCACCAGGAAAATTATCGA 13441 36 100.0 39 .................................... TCACCTGCTCAATCAAGTATTTGCCATCCATCCGGCCCA 13366 36 100.0 38 .................................... ATTAGTGTAATTAACCACAAGATTAACACTGCTACAAG 13292 36 100.0 36 .................................... TGCTGGAGGCATTCGCGGGTGTGTTGCAGTTCGTAG 13220 36 100.0 38 .................................... TCGTTGTATAACCTCAGTGTCGAAAAATTTATAGAAAA 13146 36 100.0 40 .................................... TCAAGGCTTGAGACTTCCGCATGGGGCAACAAGACGCCAT 13070 36 100.0 34 .................................... TAGTCGAATCGTGGCACTCCACCGGGTATCATCA 13000 36 100.0 37 .................................... ACTTCGACGTTCTTCTGAGTGAAATAGTATTGCAGGG 12927 36 100.0 38 .................................... GTTTCTAGTTGAGGCTGGATAGAAGCGTGGGCATTTAC 12853 36 100.0 36 .................................... TCTTGATTGCGCTCTTTTTCGGTGGAGGTATTTGAA 12781 36 100.0 36 .................................... GGAGCTTCTTTAGCTACTGCAGCAGGACTTTTACAA 12709 36 100.0 43 .................................... TCACTGAGGATGTCTAGGCTAGATTCTGCCAAGCAAAGTTCAA 12630 36 100.0 35 .................................... CCATCGATTGATACTTTTTGTCGAAGTCTGCGCGG 12559 36 100.0 38 .................................... TCACCCTCACAGACAATCTGATCGACAAACTCGAATCC 12485 36 100.0 38 .................................... GCCGCTCCGTTTCTTGCTGATATTCCAGCGCCAGATGG 12411 36 97.2 37 ....................T............... GGCTGGAACTGGGTGCCGGTACCGGCGGGCACGTACT 12338 36 100.0 40 .................................... CTGGTTTTGATACCAGTCGATCAATAGCTCACGATTATAG 12262 36 100.0 40 .................................... TTCTGGGCGCATCAAAGCAATAGCAGTCTTTTCCGTAATT 12186 36 100.0 36 .................................... TGGGGCTGACGGGCCGTATTCCAATCGCAGTTTTCG 12114 36 100.0 34 .................................... TGAACCCCGACATTACGCCTGACTCTGTGATAGT 12044 36 100.0 36 .................................... ACATCAACGCCATAATCAAGTAAATCTTCGTCTAGC 11972 36 100.0 38 .................................... TTTACCGTAAATCTCTTTAGCCAGTTCTGACAATTCCT 11898 36 100.0 36 .................................... CGGAAATGTTTATGGCAATCTCGGTAAGAAAGTGAA 11826 36 100.0 38 .................................... CCTTGCATCGTTCACGAGAAACTGACGGGTTTTTTGGA 11752 36 100.0 38 .................................... TTGGTGTGTATGGGTTCATCGTCGTTCTCCTTTGCTAA 11678 36 100.0 39 .................................... TCACATCGCCTGATTCAACCGTCGATGATTTTGGCACAT 11603 36 100.0 40 .................................... TTGCTTAATAGCAGTTCGCCAGTATTTTAGATGTTCGGGA 11527 36 100.0 38 .................................... AAAAATGCCTATTGTGGCTCCAGCAAGCATAAAGATCC 11453 36 100.0 37 .................................... TTGTGATCAATCTCCAGCGCCTGCAACGTATGCTCAA 11380 36 100.0 41 .................................... AAATGGTTTTCGGGTTTAGCTTATAGCCAACTTCCTCCTCA 11303 36 100.0 39 .................................... TGATTCAGAAATTTAGCCATGTGGCGGATCAGCACTTGT 11228 36 100.0 37 .................................... TCCTCAACGGACTCTCGCTGCTTGTCTTTGGCTGTAG 11155 36 100.0 36 .................................... TAAGTGGAATAATAGCGAAGTAGTGAAACCCAAGAC 11083 36 100.0 37 .................................... TCCACCGGGCCAGCGAGGTCACACAGTAACGAGGTGA 11010 36 100.0 37 .................................... TTCCCAGATAATCGCAGGCGGCGCGAACCGCTCTCAG 10937 36 100.0 36 .................................... CTAGATAAACTGCTTGCGTCTCCGATTACCCAACGA 10865 36 100.0 38 .................................... CTTTAACTTTCTTTTGCGTTAGCGGAATAATAGGCATG 10791 36 97.2 41 ....................T............... GACGAGATACCGATGCCTTGCCAGTCAGTTGACCTGCTTGG 10714 36 100.0 36 .................................... CCCTTCGGTTCAGAATCTTCTAGGGAATTTAGGTAA 10642 36 100.0 36 .................................... GGAAATTAACTCGTTGTTATAAAGGGAAATTTCATA 10570 36 100.0 35 .................................... GAGCCCGCACTGCAAGATTGGCCCTGTACTAAGGA 10499 36 100.0 37 .................................... AGGAATTTCTACCCAAACGGTTCCTAAATCTTGACGT 10426 36 100.0 39 .................................... TCGATATAGCTACTGCCGTCAGGGTCAAACCGCTTGACG 10351 36 100.0 38 .................................... CCAGAAGCAATCGCTCAGACCGACCAGCGCCAATTTTA 10277 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 69 36 99.9 37 GTCTCTACTTGTTAGAGAAACCAATTGAATGGAAAC # Left flank : TCGCATTCGTTAATTGGGGGCGCATATGTTGTTGTATTTGGTAACCTATGACATTCCCTGCAATCGTCGTCGCAAAAAGGTGTCTGATATTTTGGAAGGCTATGGTCGGCGGGTGCAATACAGTGTGTTTGAATGCCGACTTCCGGCCAAAAAGTATCGGGAAATGCGGCAGCGCTTGCTCAAGTTAATCGATCCTGAAGAGGATGGTTTTCGGGTTTATCCTATCTCTGGGCACACAGTCGAACAGATCGAAATTTGGTGTGGTTCTCCGCTCACTGAATTTCCTGCCTCGACCATCATTTGATCAGTCTTGATCGTGTCTGCGATGGATTACTTGCCCCCCAGCTTTAGTTGAGTTTACGTTGAATGGCTCGATCCTTTGCCCTATCTGCTTTTCGTCAGCTTAAGATAGTCGGCTACTGCCCCCAGCAGCCGACCTTGGGCGGTTCCTCGCAATGCGCCGCTGTACCCCTTGGCCTCACTAGGTTACAATAGAGGCC # Right flank : TGGTAAAGGGCTTGTCAATCTAATGCCAGTGATGAAGGATTCAGAGTGTGACAGATAGGTCAGAACCCTATTAGACGACCACAAATGAGATTGTTAGGGTACATTCCTAATAAAAACCGCCCGATTTGTTCCCTAACAGTCATTTGGAAGCCAGTGACGCCACCTGCGAGTGGTAAAGGTACGTCATCAACTGATGCTCATGCCGCTTCCAGATGCGATTGCGCCTCTGGAAATGCTCGGCCAAAAACTGGTGTACCTCTGCCAATGACCATTGGAGACCTCCCAAATTGAACGATTGGGCGGTGCTGTTAGCACCCTTCATGGCTAGACTCCGGTTATTGAATTGGAAAAGGGTTGGTCAATGGTGTGAAGTGGAACAGGTTGAAGGTGAAGAGAATCAGTCCACAATAAGAATTTTGGGAATGTGGTGATAGCCCAGCGTCGGGTTCAGGCCGCTGTGGCATCTGATTCAGCACTGATTGGAATGCACCAACAAACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTTGTTAGAGAAACCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2827-3079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWC010000117.1 Halomicronema sp. CCY15110 CCY15110_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2827 35 100.0 37 ................................... CACAGGAGCGATCCAGCAGTTGAGCAAATTGAGAATG 2899 35 100.0 38 ................................... GGTTGAACTGTGTGTTCTTCCAGTTCGGAAAAATCGTC 2972 35 97.1 38 ..............A.................... TGTAGGCCTTGGGAATAGCGAGACAGATTGATCATCGC 3045 35 94.3 0 ..........................G.....G.. | ========== ====== ====== ====== =================================== ====================================== ================== 4 35 97.9 38 CCCAAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : CCTGCAAAAGACCCACTACCGCACCGCTAAAATTGCCGCGATTACAACTCTAATTGGGGCAATTTTAATCACCATTGCTACGCCCATTTTTTATCAAGCAGCGCGAACTCGGCTGTTTAGCCCACCTTTGATCTATGTCTTTGCGGTGATTCCGGTACTCGGTATAGTGCTGGTTGGGCTGTTACTGCGCAGCCTGAATCGGGAGGAAGAAGCCACGCCCTTTATCTGGACGATTTTGATCTTTCTGCTCACCTTTATTGGCTTGGGGCTGATTGTGTTTCCCTACATCATTCCCACCCAGATCACTATTTACCAGGCGGCGGCAGCCCCCAGCGCCCTGGTGTTCATGCTCACGTTCATCGGAGTGCTGATACCCATCATGCTGTTCTACAACATTTACAACTATGTGGTCTTTCGGGGCAAGGTCATTAACGGTGACTAAGGCTAGAGGGGTGTGGCAACGATCCTGTTAACGGTTAAGTTGAAAGGGATTGCTGCGA # Right flank : CAGACAGCTATATCATGATTCAACTGTCCGTTTCCATATCTTTAAAGCCCAAAATATCAACTTGTGCGGTCTAACAGCGCTAACGACTCCGCTGGCGATCGCTGAATGCTTAGGGGAGAAATGCGATCGCCCCCATACCAACCATCAAGATCAACCGCTGGCATGATTGTTGCCCTCTTGCTTGTCCCAGTCTGCCCACAACCCTCCCGCAGGCGCTAGAGTAGAAGCCACGTTTAGCAAAGAGGAAACGATGTCGCCAGCCCCCATTGTCTTGCTTGAAACGGACTATGAAACAATCGATGCCGCCATCGCTGCCAAAGATGAACAGGCGGCTCAACTAACTGACCAAGGCATTTCCTTTAAGCAACAAACCCTCTATCGTGCTACCGATGGTGCGCGGCTATTCCTCATCACACCCATCGATCTCGAACTGGAAGCAGACGAACCCAGTCGAGCCTCATCCAAACCCAGAACCCGGCGCACCAACCCGCAAAAACGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 38846-40709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWC010000425.1 Halomicronema sp. CCY15110 CCY15110_425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 38846 37 100.0 34 ..................................... TGGGGCGAGAACATTTAGCAAAGGAGAACCAAGA 38917 37 100.0 35 ..................................... CTTTGGCCGTGACTCTAAGGTGGCGGGCAAGCTCA 38989 37 100.0 35 ..................................... GACTGGGAAAAGTTTAAGCGATTGATCGAAATTGG 39061 37 100.0 43 ..................................... CCATTCCTCAGCAGCCGGTGGGCTGTTCTCGCCAGGGTTGCGA 39141 37 100.0 36 ..................................... ATGCCAGAAACCGAAGTTGTCGAAGTGGTGGACGAC 39214 37 100.0 36 ..................................... AGCAGATCATCGGATGGTACGGCTGATATCTGATCG 39287 37 100.0 35 ..................................... CAGGCTCAGCAATTCAGAACTCTGAACGCTTCCTA 39359 37 100.0 38 ..................................... AATATTGGCGATCGCTATGTGGTGGTGATCTATGGCCC 39434 37 100.0 36 ..................................... GTTTTCCCTGGATTTACATCAGCCTCAATGAGTGAA 39507 37 100.0 35 ..................................... CTTCAGTCGTGGGCGGCATCCTACGGCGCTTTTTG 39579 37 100.0 34 ..................................... AGCTACATCGTAACCGAGTGACGCGATAAAGCGA 39650 37 100.0 34 ..................................... GATTGGGCAATCAATTTCTCGCGCCAACTGTTTG 39721 37 100.0 37 ..................................... CTTCAGTATGGGCTCACCATCTTTGCGGCCCGCTCGC 39795 37 100.0 34 ..................................... TAGTGTGGCCGGTAGTGCCGGGGCCTACGAGTTT 39866 37 100.0 37 ..................................... GGATGGCTCAACTATGAGCCGCACTGGGAAGCGTTTA 39940 37 100.0 34 ..................................... GTCGCATAAATCCTAATCGTATGTTTTCCCCCAG 40011 37 100.0 41 ..................................... GCGTAATGGCCCACGAATTCCACGAAGGCAACGCCCGCGAC 40089 37 100.0 39 ..................................... AACAGTTCAAGGCTTAGGCAGTGGGCGGATCGATTTGGA 40165 37 100.0 35 ..................................... CCCCAAATCGCCGCCCGTGGCGGCGAGCGGGACGG 40237 37 100.0 35 ..................................... GAGCAGCGACGGCAGCTTGAGATCAGAGAACGTAT 40309 37 100.0 35 ..................................... CACACTTGGTCTAGGTCAATTCTCTACAAAAAAAA 40381 37 100.0 36 ..................................... GTTTTGTTGGCAATGGTCGCAAGGGCACCCTTACGC 40454 37 100.0 36 ..................................... CTATTCTGCTAGGACTCTTCCTTCCAATACTCCCGG 40527 37 100.0 36 ..................................... GAACCCGAACAGGGCTTTGGTGGCTTCGTTGAGCAA 40600 37 100.0 36 ..................................... TCGCTCGCTTGCGGAATGCAGTTGCCGTAGGGAGTC 40673 37 97.3 0 ............................G........ | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.9 36 GCTGAAATCCCTCTGCTACGAGGGACTGAATTGAAAC # Left flank : TAAAAGGAGAAGCTCATTATAGGGAGCATGATCAAGGGCTAGCGCTTTATTTAAACAATGCTCTAGCAGCAGTGGTTTCCTGTGAACCGTTTCCACAATTTTGGGAATGGGCTGCGGACAGAAATCCAGATAAAACGGAGCAACCAAAGGGTAAAAAGGTTGGACGGATCGGGTATCGCGTTTACCTGAGTTTTACTGAGCCTGTGAAGGGTCCGATCTTGTTGGGGTATGCAGCTCATTATGGATTGGGAGCGATGCAGCCTATGCGCGAGCGGGTAGGTGTTCAGGGGCCAATTGAGCAGAACGTAACTTGTACAGTGGTTTTGGCTGATTAGCGCTGTAATGATCCGCGCAATCTCTAAAACCCCTATAGGAAAAGCGATGTAGTGACGCAAGTGACTTTTATTTTTGTAGCGCTTTGAGATGATTGACTTAGTTTTTAGGGATTCGCGCACTTGTACCTTGAAAACCAAATACATTAAGGCTTCTGGATGCCAGCC # Right flank : CAAAGGTGAGGGAGCTTGAGATATTTTTCAAAAGCCTATACCTAGACTGCACTTCTGTATTGATGCTGCCAAGGCATAACACTAGGCTGAAATTTTGTAGTGTAAGTCTTTGTGTAATATTCAACCCCCTCCTAACCTGAGTCGGAGTGATCGGTGCCCAGCGATATTCATGTCAAGGACACTTACACTATACTTACACTAAATTTTTACCTACCTTGCTGCGCCTTCCCCAGATACTTAGACCGCAGCTTGCCTCCCTGCCAGTAGCGCAGATAAAGGTACGGCCCATGCCTCTTATTGCCACGGGGAATGTACTTCGCTTCAATGTGGCCTCTCGATCCTTGCGGCGATCGCTGTTTGGGTTCATCTCTGCTGCCGTCGCCCTCCGATTCAGGTTCAGAGGGTTCTTGGGGCGTTTCCAGGGCTTCGATCAGTCCTCCCAGTGCAGCCTGAAGTTCCCGCAGGTCGGCCAGTTTCCAGGCAGCGAGGGAGGGGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAAATCCCTCTGCTACGAGGGACTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 1429-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWC010000073.1 Halomicronema sp. CCY15110 CCY15110_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1428 37 100.0 38 ..................................... ATCGGAATGCCGTAATAAGGCACCTGAAAGCGCTGTAA 1353 37 100.0 35 ..................................... TCCTATCTTAAGCTTACTCGTAGGTTACTCGCATA 1281 37 100.0 34 ..................................... ATTGCTTCAATCCAGCAATGCGAGCAGGCGGCTG 1210 37 100.0 35 ..................................... AACCTCTTTACGGGTAAAGAGGTTTACGCTAATGT 1138 37 100.0 36 ..................................... ATCGCTACAGTCGCATCCGCCAAGGCGCTCAACTAA 1065 37 100.0 34 ..................................... AGGATTAATACCCTGAAGATTGACCCGGCAGAGG 994 37 100.0 35 ..................................... ATCAAGGCTCGGTAGCGGGCGCTGGTGGGGGCAAG 922 37 100.0 40 ..................................... ACCGCAACAGCCACAAAGACAACAGGCATCCCGACCGCAG 845 37 100.0 35 ..................................... ACTGCCCTGACGCTTTACCGGCCTTTGCGACAAGG 773 37 100.0 39 ..................................... TGGAACAATTCGGGATCCCAGTCGGGTATGGTGCCGGAA 697 37 100.0 36 ..................................... TGAATCTCCACAGCCTCAGATTGCCAAAGAGATTGC 624 37 97.3 37 .........G........................... GCAGACCAATGCTACAGCTGGTTGTTATCGATAAAAA 550 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.6 36 GTCGCCCAAAGCATTTCAGGGCAGGGCGGATTGAAAG # Left flank : GCAAGGAACTTCTCAAGAAAAAGCGAGAAATTTAGCGATCGCTGCTTACGAATCACGTACAGTCGTCCAAAGAGCTTGACAGGTTCGTATGTACCACTAAAATAAATGCAGCGCCTAAGCTCATGCCGTCAAAGGTCTCTGTGCTTAGAAAAAGGGCTAGTTTGACGGTCTGAACACCGTCCTGCTTTCTGGCCTAGATAACTGTCCATCCCCGAAGTTGTAAGGCGCACGCAGCAAGAGGGCACGGGTTCTGGAGCGATGGTTATCAAATTCACCTCCGAGCAAGGAGGAATCCACCCAAATCTTAAATTTGGCAAACCTAAGCGAGGTCAAAATCCCTAGTAGGTTTGCCAAAAGGCTGAAGCTCTTAATCTACGAAGGTTTGAGTTGACTGGCTTATCCAAATTGCCGGTCTTCTAACAGAATCCGCTAGAACTAGATTGAGCTTTGCCAAATTCAGCTCTGAAAAGCTTGCAGGGTATACCTTTCCAATGGCAAGG # Right flank : CAGTAGAGGCTGATTATGCTCAGCGTATTTCAGAGCAGTGCGACCGAAATCCCAGAATATTTGTACTTAATTCAATGTCGGCGCTAATCTATATACAGGTGGATTGAAAGGCGCACTTCGTTCGGGAAAGTACACCTTATCTTTGATAAGGCCTTTTTAGATGCGAACTCATCCGACGACAACATTGTGTGATCAGTCGCATTTAGCAACCAAACGACACAAATGTGTGAATGACGACAGAGAAACAGTTATGACGACACGAATTAGTGATCGACGACAAATAACTTGTTACTCGACACAAAAGAATCGGGATGAGAGGATTCGAACCTCCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCAGTAATCAAGTTATAAATTAGCACAGAGGCGCGATCGCTGTTCATCTTTTGTAAATTGGTAATTGCTCAACCAGGTTGACTCAAGCGATGAGCTAGCAGAGGATGTTAGGCTTTGGTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCAAAGCATTTCAGGGCAGGGCGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //