Array 1 60879-64932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYG01000008.1 Haematobacter massiliensis strain CCUG 47968 contig8_scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60879 29 100.0 32 ............................. AGCATAGTGGACGCCGTGAAACGGGCGCTGCA 60940 29 100.0 32 ............................. TCGTCGGCGGATTTCGACCTGACCGTTGTGCC 61001 29 100.0 32 ............................. GTTTCCAGATCTTCGGCGCCAAGGAACGCGAG 61062 29 100.0 32 ............................. ACGTCTCATATCCGGAACATCCTGACGGCAAG 61123 29 100.0 32 ............................. TAGGCCAGATCAACCAAGGCGCATCCGCCTCA 61184 29 100.0 32 ............................. GCGGTTCTTGTGCAGCTCCTCATGCGCCGCAA 61245 29 100.0 32 ............................. ACAGCCACGCCGCGAGTTTTCCGGAACCGTTC 61306 29 100.0 32 ............................. GCGAAACTGTCGGACTCCGAACTTATGCAGAA 61367 29 100.0 32 ............................. ACGCCCGAGGATATCACGATCCGCCGCAACAT 61428 29 100.0 32 ............................. GACTTATCGGCGCGGATGTTGACGCGATCTAC 61489 29 100.0 32 ............................. GCGGTGGCTGCGGCTGCGGTCACTCTGAAGCG 61550 29 96.6 32 ............................T GTTGATCTGCGGCCTGTTTGTTGCACGAAACC 61611 29 100.0 32 ............................. CGGGTAGCACACCCCATTCCGCATCATACCCG 61672 29 100.0 32 ............................. CCATGTCCCCGATCATCGCGGCGCTTGGCGGT 61733 29 100.0 32 ............................. CCAGTTCATAATGCCATCGCGTTCAGCGTACA 61794 29 100.0 32 ............................. TCACGCCTCGGTCGCGTCTCATCACCGCCTAT 61855 29 100.0 32 ............................. CCGCAGGTGCCTGAGAGTGGCGACGGCGGCGA 61916 29 100.0 31 ............................. GCATGGGTGCGCTGAGGAATAGGCGCGCTAC 61976 29 100.0 32 ............................. CGATATGCCCAGTTAGTTTAAGGGTGATAAAT 62037 29 100.0 32 ............................. GTCATACCTATGCCTTGCTGCCTCCCTCTTTA 62098 29 100.0 32 ............................. AAATTCACCAATAAGAACACCCCTTGACACCC 62159 29 100.0 32 ............................. GACCAGAGAAATTCGCCAAACCATTCACCAGG 62220 29 100.0 32 ............................. ATGGTGCACCGAATACGTCTATGGACGGATGG 62281 29 100.0 32 ............................. AGATTGGGGCTAAGGTGGGGGATGTGGTGGAG 62342 29 100.0 32 ............................. TCCAGCAGGACATTTGTAGCGAGTCAATGCGC 62403 29 100.0 32 ............................. GTGACAGGCCAGCGCTTCGATTGGCACCCCCG 62464 29 100.0 32 ............................. TATTACAAAACCCGTGATGGTCGGACGGTCGG 62525 29 100.0 32 ............................. CGTGCGATGCATAATTCAACGAAACGCAAACG 62586 29 100.0 32 ............................. GAAGTCCGGTTGACCATAGGTTTCGCGTTCAT 62647 29 100.0 32 ............................. CTCAGCGAACTGATCGAGGCGATGCAGCGCAC 62708 29 100.0 32 ............................. TTGCGTGATGCATCCCCGGATACCGGCGCTGA 62769 29 100.0 32 ............................. ATGCCGGCCCTTTTCGCCGCCTCTCCTTCGCG 62830 29 100.0 32 ............................. CATCGCATCGACAACCAACCCAGCGCGCTTGT 62891 29 100.0 32 ............................. CTCCCGGACCGGATAACAGTTTTCTGGTGGGC 62952 29 100.0 32 ............................. GACAAGCTGGCGCAGGTGCAGCTAATCGCACT 63013 29 100.0 32 ............................. GTGTCCACGCTCGTCTATAGTCGCCGGGTAGG 63074 29 100.0 32 ............................. TAATACTCTCACGCCGCGATGCAGCATCAATC 63135 29 100.0 32 ............................. GTGGACGTGCTGTTCTGCCCCCCGGATGCTCG 63196 29 100.0 32 ............................. GCTCCATCCCTCCACAGTTTCTCCACTACGGA 63257 29 100.0 32 ............................. ACACTAATGGATTCGATGTCGGCTACGTCTCG 63318 29 100.0 32 ............................. CGGACGTCAATTCGTCAATGGTGCATCTGGCA 63379 29 100.0 32 ............................. CATAACTCCGCTAAATTCTATGAAAATGGAGA 63440 29 100.0 32 ............................. GTCTGTTCTCCGCTGCGTATTTGGCATGAGTA 63501 29 100.0 32 ............................. CAGGGACTGGCAGAACGCCGTCCATATAGCGG 63562 29 100.0 32 ............................. CGATTTGCTGAATTCGTCGCTAATGACCCCAA 63623 29 100.0 32 ............................. CCAATCGTAGCATTTCCCGGAAAAGACCAGAT 63684 29 96.6 32 ............................A CGGTCGCAGACGCAGCCGCGCCGGTCCAGACC 63745 29 100.0 32 ............................. GCGCACCGCTGCCCGCCCGCCTGACGTGCCGC 63806 29 100.0 32 ............................. GCCCCGTCAGTCGTCTGGCGGGGCCGCCACGT 63867 29 100.0 32 ............................. TCAACGGTTTCCGGGACGAACGGTGGCTTCGG 63928 29 100.0 32 ............................. CGGAAATAGAGGCAGCCGAACTGGCTGCTAAA 63989 29 100.0 32 ............................. GCAACCCAATACCGGGTGAATGTCTGGGCGCT 64050 29 100.0 32 ............................. CGGCAGCAACGATCCGAAGATGCCGGATGGCT 64111 29 100.0 32 ............................. ACGTTGCCACCGGCTGGTTTTATACCACGCCC 64172 29 100.0 32 ............................. CTTTCGGCGGCGGGTCGGGAGAGGCTCTTCGC 64233 29 100.0 32 ............................. GCTTTCGACAGCTCGCTCGGGTCTTCGAGCCG 64294 29 100.0 32 ............................. AGTTGACTTTCCTGCGCCTTTCTCCCCAGTCA 64355 29 100.0 32 ............................. AACCCGAGCCGCTTCGGATAGCCGGGCACTTT 64416 29 96.6 32 ............................C GGCACGGTGGGCAGCGAGCCGGTGACGATCTC 64477 29 100.0 32 ............................. GCTCTCTTTAACACTAAGGGAGCTAGGTTGGC 64538 29 100.0 32 ............................. ACGGTCAGGCTTCCTCAACCAGATCAGCATCG 64599 29 100.0 32 ............................. GACCGCGTGTCAGCGGATCGGCGAAGAGCAGC 64660 29 100.0 32 ............................. GGCGCGCGCAACCGGGACTACCTGACTTCTGA 64721 29 100.0 32 ............................. CAGTCATCAGTTGGCGGAGAACAGGCGGATGG 64782 29 100.0 32 ............................. AACGCCAACTACACGGGTGGTGGTCTGAACAC 64843 29 100.0 32 ............................. GTGCGCGCCGGTGAGAGGGCGCTGTTTCGGGA 64904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 67 29 99.8 32 CCGTTCCCCGCTCGCGCGGGGATGAACCG # Left flank : CTCCTGTCGAAGATCATCCCCGGCATCGAGGCCGTGCTCGAGGCGGGCGAACTTCCCCGCCCCGATCCGCCACCGGAGGCGCTCGGCCCCGCCTTTCCCGACCAGGCCTCCGGTGATGAGGGCCACCGCGGATGATGGTGGTGGTGGTGACAAACGCCCCGCCGCGGCTGAGAGGGCGGCTCGCCGCCTGGTTGCTGGAGGTGCGCGCCGGGGTCTATGTCGGCGACTATTCCGCCCGGACGCGCGAGATGATCTGGGGCCAGGTCATCTCCTATATCGACGAAGGCGATGCGGTGATGGTCTGGCGCGCACAGACCGACCAGGGTTTCGACTTCCTGACAACGGGCCGGAACCGGCGGATGCCGGTGGATTTCGACGGGCTGAAGCTGGTGAGCTTTCGCCCGCGTGATACCGAAAGCTGAGCGGCGAAAGAGGCCTTAGGCATCGGTGCGTTCTTTGACAATCGAATAGTTTTGATGAATCAAATGTCTGCAGGAAGA # Right flank : GCTGGGGACGTCGTCGTTCCGAAGGGATATGCGGTGGCGCCTGTCGATTTCGAAAAGGATCAGACGGTGAAGGTCACCCCTTGCTGACCGGGCTCTTTATCCAAAAGCAGAATTATACGGTGGGTCTGGCCAGGGTGGCGTCGGACGAGGCGTATTCCTGCCAGCTGGGGTCATGCTGGGCCTCACTCTGCTAATTCTGGGGAGGACGTAGTGCAGAATTCGCGATCTTGGGAAGCCGTTCAGCCAACCCCTATGCAGCTTGGGCAAGGCGCGCGTCGCGGCTGTCGGTTACGATTCCGCTACCTCGGGGAGACGTCCCGCAGGTACCGCCCATTAGGTCTAGAAGCTTCCGAACCACGTTCCCAGCAGGATCACGGCGATCAGAGCCAGCAATGCGCCAATGACCGCGACCATGACGACATCGCGATAGCTCTGCCGGGCTGTGACGCCGCAGACCGACAGCAGCGTTACCACAGCGCCGCTATGAGGGAGGCTGTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCTCGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //