Array 1 409866-406227 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG315691.1 Halopiger goleimassiliensis strain IIH3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 409865 37 100.0 36 ..................................... AACAGCCTCGAGCGACCGCACCCGACCGTGACCGCG 409792 37 100.0 37 ..................................... TCGGGCGGAACGATGCTCGCCGCCGGGGTGGTCGCTG 409718 37 100.0 38 ..................................... ACCGACAATGACGGGGGAGCAGGAGCTATCGAAGGATG 409643 37 100.0 35 ..................................... ATCGCCAGCGGTTCCTGGTGATCCATCCCCGCCAC 409571 37 100.0 37 ..................................... CGGCCGGATCAACTCGTAGAACGTGAGGTTTGCTTCT 409497 37 100.0 35 ..................................... AGCCAGATCGCTGCGCCGAATGCCACCGTCCACTG 409425 37 100.0 36 ..................................... ATCAATCGTCACCATACGCAGTGATCGACGTACCCG 409352 37 100.0 36 ..................................... ACAAGTACTACGCGAAACTGAAGGCCCTCGAACGTC 409279 37 100.0 36 ..................................... AACACTACGGCCGGGGCGAGCGCTCGAGCACGCCCG 409206 37 100.0 37 ..................................... CCCGATCGCGTCGAGATCGTCAGCGTTCGCGTCGAGG 409132 37 100.0 37 ..................................... TCGATCCACTGGTCTCCGTCGAGCGGGCCGACACGCG 409058 37 100.0 35 ..................................... GACGGCCCGAATCCCTACCCTGTCAATGGCGGCGG 408986 37 100.0 36 ..................................... CCGACGACGAGGTCTTCGAGAACGTCGCGAAGCGCC 408913 37 100.0 47 ..................................... AGCAGCAGCGGCGATCGCCCCGGCGGGGGTCGCGATCGAGCCGCCGG 408829 37 100.0 36 ..................................... GAGCTGCCCGGCGGCGAGATCGTCGGCGACCTCGAG 408756 37 100.0 35 ..................................... CACTATCCGGCGGATGTCCTCGTCGGGTGGGCTGT 408684 37 100.0 37 ..................................... GCGTTTGCCGTATGTGGGGCCAACGACGTACTCGGAC 408610 37 100.0 37 ..................................... CTGAATGAGGCCGTTGCCGAACCAGCGGTCGCGGTCT 408536 37 100.0 36 ..................................... GATCTCGGGAAGGCCGAACCCCTCGGTGAGAGCGCG 408463 37 100.0 34 ..................................... CTATTCGTCGTCGCCGAGGTATTCGTCGGCGTGT 408392 37 100.0 53 ..................................... AGTGTCGTCTGCCGGACCCGCGATTTGGTCGGAGACGTTAAACGTCCCGTCCT 408302 37 100.0 36 ..................................... ATCACGCGCCAACTCAACGCGGCCGCCAACGGTGAC 408229 37 100.0 37 ..................................... AGCGCGAAGTCGGTCTTTCCGCGCCCCATGAGCGCCG 408155 37 100.0 35 ..................................... GATCTCCGTGCTGGCGGCGGGCGACGCGCAAGAGG 408083 37 100.0 36 ..................................... GTCGCAGCCAACCAGATCATGGGATGGTTCGGCAAC 408010 37 100.0 36 ..................................... TATTGTTAGCGTCGGTGGTGTTCCAACTCATCTACC 407937 37 100.0 35 ..................................... GATCAAACGCGGTGGCTCGATTTTCGGCGACGACG 407865 37 100.0 36 ..................................... AGCCCGCTCTGCGCCGACCGCGTCGGACTCCGAGTC 407792 37 100.0 36 ..................................... GATCCCGAACAGCAGGATGATCGACACGACCACGAG 407719 37 100.0 35 ..................................... CCCGGAGGTATCGAGGTACGACGGAGTATCGTCTC 407647 37 100.0 35 ..................................... GAGGATCGCTCGCGATCGTCTCCGCTCGACGAGGA 407575 37 100.0 37 ..................................... GAGGACGATGACTGACGAGACCTCAAAGTCGGTTCAG 407501 37 100.0 37 ..................................... AGGACGGTCGCCCGATCCTCCCCGATGGAACGGTTGG 407427 37 100.0 35 ..................................... GTTGCGGTTAACGACGCGGTCTCCGTACGGAATTT 407355 37 100.0 36 ..................................... GATCAGTTTACACTGCTCCGAGTGGATCAACCAGTC 407282 37 100.0 36 ..................................... TCGGCCTGGGGACTTCGATCCTGTCCGTGTCGGAGC 407209 37 100.0 36 ..................................... AATCCGAGCCCATTACGCCACACCTCCGGATCTTGG 407136 37 100.0 36 ..................................... ATCCGCGACGAGAGCGGGGATCCGGTCGCGGCCTTC 407063 37 100.0 36 ..................................... ACGACCTTGTCCCGGTTCTCGTCGTAGTACGTCCAG 406990 37 100.0 35 ..................................... GCTATCGACCAGACGAAAGGCCACCCGTGGACGGG 406918 37 100.0 36 ..................................... AAGTTGAGCCACCGGAAGTCGGTTATCTCGAGTCCC 406845 37 100.0 34 ..................................... AAACGGTCCTCGAGGCCCTCGACGAGTCCAAGCT 406774 37 100.0 40 ..................................... GAATTTGAGACAGTCGAATGTACGTCATGCGAACAGGACG 406697 37 100.0 36 ..................................... AGTCATCGACTGCGCGGACACGACTTCCGTCCCGTC 406624 37 100.0 34 ..................................... GCGCTGGTTATCGCGGTCGCGATTAGGGAGGCGT 406553 37 100.0 33 ..................................... GTTAGCTACCCGCTTTCATCCGGATCCCCGAGC 406483 37 100.0 36 ..................................... TTTACCGCCTAACACGTCGTGCCACGCCTCTTTTGC 406410 37 100.0 38 ..................................... GCATAGAATGTCGCTGCCGGTGTAGGACCACCGGCAAC 406335 37 100.0 35 ..................................... CCGGAGGGGCCGGTAGGCCGGGTGACGGTTCTGGT 406263 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 50 37 100.0 37 GTCGCAGCGGTCAGAAAACCCAGGACGGGATTGAAAC # Left flank : CTGACGGGTCAGTGATCGTGAACTTCGGCGGTGGGGCGCGTGAGGTGTTCCTGCCGCTCTCGATGGCCGCCGCGATGTACGCCCATCGTATCGAGCAGGCGTTCCAGTACACCGATATCGACCAACAGGTGACCGAGATCGACCTGCCACATCTCACCGCGACGGTTCCGGGCCACACACGCCCAACGTTGCGGGCGCTCGCGAGGGCCGACCGACAGTTATCGATTTCCGAACTCGCCCGTAAGACCGAACACGACTCGAGTACGATAGCCAGACACGTCGACGTGCTCGAGGACAGCGGGCTGGTCACAACCCAAAGCAGCGGCCGGGCGAAGTACGTAGACGTAACCCCAACCGGGTGGCTGCTCTCGAAAGCCACTCACGGGTAAGTTTTCGTCGACCTTTTTGAATCCCGTGTACGACCCCGGTCGACGAACTGCCGGCCGAAAATGATGTATCGATAGACCGTTATAGCTCACATAGCCGCGTTTCGCCCCCCT # Right flank : CGCTCGAGTTCGTCTCGATCGTGATGCTCGTCCTCGTTACAGGAACCAGAAAATCCAGTATAAGAGAGGATCTAAACCTCGAAAATCCTTTATGACAGCTATCGAACGAAGCGTCGAAGTTGAATTTATTCACGACGGAACCCACTCTCGTTGGCTTCTGACGAACGAATCGCGCCGAAGCGTACTATCTGGACGGATTCCTGACGCACGATCGGGTGTTGTCTATCGTCGAAAGAACGATTCACGTTCCACATACGTCGTTGATCTCGCGAATATTCGTCATGAGCGTCTCTGTGTATGATCCGTTCGTAACAACGTGATCCCTTGAATTAGCCGGCATCGAGTACAAACGATCAGCCGGTACTACCGTAGCGGGACGGATGTACGCGTTCGTCTCTCTGTTGGTCATCATCTCGCTGTCGGTGCTCGTCGTTCGGGTGGGGACCGTCGCGTTGACGATGACCGGGCTCTCGAGGGAGGTGGCCTCGTTCCAGTCGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGGTCAGAAAACCCAGGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 419596-421530 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG315691.1 Halopiger goleimassiliensis strain IIH3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 419596 37 100.0 36 ..................................... CTGGTCGGCTTTCGGTCCGACCGGCGCGCCTAACGT 419669 37 100.0 36 ..................................... CACGACGCCCCAAATCTCATCGACCTGTAGATCCGG 419742 37 100.0 34 ..................................... GCAACTACGCGATTTTCGAGCGGTCAGTGGATCT 419813 37 100.0 36 ..................................... GGCAGAGTCACAAGATCGAGGAGTGGATGCAGCCAT 419886 37 100.0 37 ..................................... CGGAAGCGAGAGTAGCACAATATCGCCGTCGCGTCTT 419960 37 100.0 36 ..................................... TCCTTCAGGGAGCGCAGCTTCGCGCTCGTGAAGCCG 420033 37 100.0 37 ..................................... GCTGAACGGTACGATTTTGGCCGCCTCACGGGTTGAC 420107 37 100.0 36 ..................................... GGTCGGCTGCGATCGGATGTCGCGCTCGGTCGTCTC 420180 37 100.0 33 ..................................... CGAGCCACACCGCCATCGACGCGGTCCTCGCAC 420250 37 100.0 37 ..................................... CCGGTCGAGACCGAGCTGGACGTGATGCAGCTCGCGT 420324 37 100.0 37 ..................................... AGGGCCCCTTGACTGCGGAGGATGTCGGCGACGCGGC 420398 37 100.0 35 ..................................... AGAGTGAGTAGTCCTCGCAGAACGCGTCAATCCCC 420470 37 100.0 34 ..................................... ACGGTGAGCCGCCGCAGGCTCACACTTTCGTCGA 420541 37 100.0 34 ..................................... TAGGCCTCGAGCCACGCGAGATAGGTTTCGGCAT 420612 37 100.0 38 ..................................... GAAGTTCATCACGTCAACAGCGTGACGGACGACCTCGA 420687 37 100.0 37 ..................................... GTGGAGAACGGCCACGTCGTCGTTCTGTAGCGGCACG 420761 37 100.0 33 ..................................... GACAAGGACACCTATCTCCCGCCCTCAGAGGGG 420831 37 100.0 36 ..................................... CGCGTCGGAAACTGCTCTGCAACCCGCTGTGGTCGA 420904 37 100.0 37 ..................................... AGAACGCCACTTTCGAAACTGAAACCTCCGTGATTGC 420978 37 100.0 34 ..................................... ACTGCAATTGGACACGGAGCAGTCGAGGACCTGT 421049 37 100.0 38 ..................................... GCCGTTCGACTTCGGCCAATCCGATTCGCGATCGACGT 421124 37 100.0 36 ..................................... TACCGACGCACCCACTCGAGATACGGGGCGAGTGGT 421197 37 100.0 39 ..................................... CCGTGGATCTGCTCGCCGTCCGCGTTGTGCAGTTGGGCG 421273 37 100.0 36 ..................................... ACGGCAAGCTTGAGGAAATCCAGCAGGACATTCTCG 421346 37 100.0 38 ..................................... AGCCGGTCGCCGAGTTCTACGTCGTTCAGAACCGTCGT 421421 37 100.0 36 ..................................... GCGGATGCCCGGCTTCGGAGCCGGTTGCTCGCCGGC 421494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 100.0 36 GTCGCAGGGACCAGAAAACCCAGAACGGGATTGAAAC # Left flank : GAGTACACTGTCACGCGGCGGAAAGCGATCCGCCAGCAAGCGATTCTCCTGCGGAAGGCGATCACTGGAGAACTGGACGAGTATCACCCGCTTTCGTTCGCCCGATAACCATGCGCCTTGCGATTGCCTACGACATCAGCGACGATACGAACCGCCGTCGCGTGTACCGGACGCTCCAGCGATACGGCGCCTGGCGGCAGTACAGCGTGTTCGAACTCGAGATCGACAAGACCCAGCGTGTCGAACTCGAAGACGAACTCGAGTCACACATCGAGCCGAGCGATGGGGACCGAATTCGGATATACCGGCTCTGTAGTGCTTGCCAGGATGCGACGACCGATATTGGGGACGAACCACCCGACGAACAGTCGAACGTGATCTGACGGTTCCCCTTCATCGACCTTTTTGAATACCGTGTACAGCCCCGGTCGACGAACTCGAGTGAGAATTTTAGCGTCCAGGAAACGTTTTTGTCCCTTCTCGCCGTATCTCGACCCCCT # Right flank : CGTCGTCCTCGAGGCGTACGCCCATCGGCTCGTCAGGTCACAGCAGTCAGAAACCTAGGACGAGGTCAAAATCGCACACCGACACGGTCACCAACTGGAGCTGAGTTGCAGAAATCAGAAACCGTGAATCACTAGTCAGTCAGTGGTCGGTAGTCCTCTCGAAATCGATTCGAAGGTCGCTACGAATGCAATAAATCTATCATTCGAAGGGGCTACTCGAGCCGCTCCAGCACCGCCTCTTTCTCGTAGGCGAGCGTCAGCGACCGCGAGCGGCCCCGTCCCTCGACGTCCGCGTAGTCGGCGTCGATCAGCCCCAGTTGGTCGAGTTTGTTGACGATCTCCGAGTAGCGGGTGTATCCCAGATCCGTCCGCTCGTGGAACGCCTCGTAGACCTCGCCGGCCTGCTCGCCGTCGTGGTGGGCGATCACCTCGAGTAACGTCCGCTCGGTGTCGGTCAGCCCCGACAGCGACCGCGAGAGGTTGATGTACTTGGACTTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGACCAGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 1 119886-119068 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG315690.1 Halopiger goleimassiliensis strain IIH3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 119885 30 100.0 36 .............................. ATTTTGTACCGACGGACGCCGTAGGCCATGCCGACG 119819 30 100.0 34 .............................. CCCGACCGACCTCGGTCCAGGAGGAGACGATCGA 119755 30 100.0 36 .............................. TCCATCCCACTCACGCGCCCGAAGTACACGCCAGCC 119689 30 100.0 36 .............................. TCACAAGTTACTGACCCGCTGGGTCAATCGAGAATG 119623 30 100.0 35 .............................. ACAGGGTGGAGGCACTAACCGCATGACTGCGCCGG 119558 30 100.0 36 .............................. TCGACTACACGCTGACGACGGGTCACGCGACTGCTG 119492 30 100.0 36 .............................. CCCTATACTGGCAATCCAGTACAAGGGAATGACAGA 119426 30 100.0 37 .............................. AAATCACCGTCTGCTCGATCGAGCGAAATCCATGGGG 119359 30 100.0 34 .............................. AACCGTGAGATCGACGTCACCATAGCCTGTATTG 119295 30 100.0 39 .............................. GCTTGTCGATCTACGAAGGGATACAGAGCCTCAAGGCCG 119226 30 100.0 34 .............................. GGCGGCTACAACCTCGCGGACCCGATCTGGACGG 119162 30 100.0 35 .............................. CGTCGTGGACGATCGACTGGCTTGCCCCGCTCACG 119097 30 93.3 0 ........T...G................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : GGCCCCGTCGAACGGGTCGACGTACGAGGGGTGGTTGTGGCTCTCGATCCCGAGCGTAATGTACGTCTCCGCGTCGCTCTCGGCGTCCTCGCCATTCGGTAGCGCGACGACCGCCGCATCGTCACCCGGCCCGACGACGACCTGCTCGCCCTCGCTCTCGAACGCGGAGAGGAGGGGTCTCGAGGAGCGGTACGCGCAGTGTTCGCTCCAGAGGTTCTCGAACAGCGCCGCCTCGGCTGGGGTCGGCTCACGCCCCAGTTCCTCGACGACGAGTTCGCGATCCGACTCGGCAAGACTCATTCATGTCGGTGGTGGAAGTCGGGGGGTAAAGGGGTTTCCATATGCACATTTGTGTATTCACTAGTCGAACTGAATTCTGGTTTCTCTCGGTGGTCCCTTCATTCCATCGACCCCCCGGGAGTGACCTGCTATTGCAGGTCGACGGAAAGCCTTTGAGGAATGCGGCCTTTAGCCAGCCTGACGGCCCGAAATCGGCCATG # Right flank : TAAAAACAGTGATCTTCCATTCTTCCCGGACCCCCATCGTTTCAGTCGGATATTCATTGAAAGAGTCAAGGACTAATCCATCAGTTCGATCACAGTCGCCAGCGGTTCAGATGAATCGATGGCCGAGCGCGATCCGGGTCGAGCGAGCAGCAGTCGGTGATCCGATTTCGCGAGCCAACGGTCGGACCGGGGCGCTTTTCATCAGGCGTGATAAACGAACGGGTGTGCTGTCGGTCGAACTCCACGCCCACTCCGAGCTGTCGTACGACGGCCGTGACCCCGTCGAACTCATCCTCGAGCAGGCACAGGCGGTCGGCCTCGACGCGATCGCGATCACCGATCACGACGAAATCGACGCGAGCCTCGAGGCCGCTGCCCTGGCCCCGGAGTACGACCTCGTCGGAATCCCCGGGATGGAGATCTCGAGCAAGGCCGGCCACGTGCTCGGACTGGGCATCGAGGAACCTATCCCGCCCGGCCTCTCCTTCGAGACGACGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2170308-2169626 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG315690.1 Halopiger goleimassiliensis strain IIH3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2170307 30 100.0 36 .............................. GTTTACCGCGGCCGACCGGACGTTGCCAGCGGGATT 2170241 30 100.0 32 .............................. ATGCTCTCCCTCCAATTGCTTTGACCCAGACG 2170179 30 100.0 34 .............................. TCCAAGCCACACTCATGAGTCAATCACAACAGCA 2170115 30 100.0 35 .............................. GACCGTGGTGGCCGTCTCACCGGCCATGAACCCCT 2170050 30 100.0 37 .............................. TCGGTGGAGAGTCTCCATACCGGGTGTTTGACGACTC 2169983 30 100.0 36 .............................. CCATCCGGGTCTGGTCGGTGATCGGGAGGCGGCAGA 2169917 30 100.0 34 .............................. ATCGGCGACGAGTTCTCGAGCAACGCGTCGGGAA 2169853 30 100.0 36 .............................. CGGGGACGGTGCCCGCGGATGAGGCTCGGGACGATC 2169787 30 100.0 35 .............................. GTTTTCAGGTCCGCGGACATCCAGATCGTCAACCG 2169722 30 100.0 37 .............................. GGCTGCTGTCCCCCGAGGCGAAGCTACGGATCGTCGC 2169655 30 93.3 0 ......................A.....T. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 99.4 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AACGAACTCGAGGTCCACCGGGAGGGTGATCGGGGCTACGAGACGATCCTGGTCACCGACGAGGACGATCCCTACGTCGACCACTGGTGGCCCCCGGGCCACGTGCTGGGCTGGGAGCACACCTTCGTCCACGAGAACTACGAGTTCCTCTCGACGGTGGCGAGCGAGGCGTCTCGAACCGGAGGCAGTGAAACCGCCGACGACGGGGGGTTCGCGCCCAGTTTCGAGGACGGGCTGGCGGCCCAGCGGGTCCTCGCCGCCATCGAGGAGAGCGACGAGCGCGGCGAGTGGGTGACCCTCGAGTAAGCGCGGACTGAGGCCGATTTCGACGGGTCCGGATCGGCATTGCAATAGATTCGACGTAATTCGTCAGTCGCGTTCATCGATCGGTCGTGGCCTCGCTCCATCGACCCCCCAGGGTTTCCTGGGTATTGTCGGTCGACGGAAATGGATATGTGCGAGTAATGCCTATGGACGCTCAGCGCCGGATATCCGGCATG # Right flank : GAGTATGTCTCGAGTACGGAACCGCAAGTTCGTTCTGGAGGACGATGATGGGAACTAGCGGCGGGAAACGCTCGATTTACGGGTGGTTCGTATCGAGCAACGTCAGCGTCTCGATCTCGTCGTAGCGGACGCTCTTGCCGTCTAGGGGTTCGCCGTCGAGCTCGAGGTAGCCGGGGGAGACGTCGGTCACCTCGCCCGTCACGGCGTGGTCGTCGCTGCCGGTCCGTTCGGCCTCTCGTACCTCGACGTCGTCCCCCACGTCGACGTGATCCGAGATCAGTTCGGCGGCGCGCTGTTCGTCGGCCTCGGGCGGGATGGTGAGTTCGGTCATCGTCGGAGGAGTAGAGGGCCACGGGGATAACGGCGGACGCGTCAGGTGACGGGTGCTTTTGACGGCCGGGTCCCCGACGCCGGTCACTCGAAGTACGCCGCAAGTCGCTCGGCGGCCTCCTCGACGCGGGGCGTGACCAGCGCGAACCGGAACCAGTCGCGCCGCGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //