Array 1 1925504-1925672 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1925504 32 100.0 37 ................................ TTGTCCCGGCATCCTACGGACGGGTTGGGACAATACA 1925573 32 100.0 36 ................................ GGCTCTACGGGAATCGGGTCGATGGGGGCAAGATGC 1925641 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 100.0 37 CTTTTAAAGCTTCCTTTAGCAGGGTTGGAAAC # Left flank : GAAGCACATTCTGGGCGACGCACCCTACGAGCCCTTTGTGAGCAGGTGGTGAGGTGTTTGTCCTGATGTTCTATGACGTGGGGGAGAAGCGCGTCGGCAAGGTCCTGAAGACGGCGCGGCGCTACCTCACGTGGATTCAGAACTCGGTGTTGGAGGGGGAATTGACGCCCGCTTCCATGGCCGCACTGAAGATGGACGTACACAAGGTGCTGGACCTGCAATATGATAGCGTGCTATTCTACATGTGGCGCACGGAGCGCTATATGTCGCGCGAGGTCCTTGGCGTGGAGCGCGGAGAGACGGATTTTCTGGTGTAGTGGGCGGGAACGGGCTGGAGCGAGCTGAAACAATCCAGCCCTTTTGAGGTCCTGCGGCGCAAATTGACAACTTCACAGCAGGTTTCAATTTCTGCGTCGCCCCTGATGGATAAAAGGGCAGGGGCCGGCGCAGTTGACTGATTGGTCGAATTGAAAGAAACGGTTTCCGCCTTGATGCAACGG # Right flank : CCGGCAAGGACACCTCCTTCCGCGATATTCTGCCAGCTTTTTTAAAGAGGGTGGAACTTGATCTCCAACGATAGGGCCATCCGAGCGTATTTGGATGTACAATGGAATAGGATTGAAGGCGGCGCTGCCGGCGTGCGTGTTTCGGCACGGGGATGGCGTACCGTGCTGCTGTAGAAGCTCGGTCCTTGTGCCATTTTTTGATGGAGCAGCGCTTCGTTGAGCGCATCCTGAACGTGTTTGAAGCGCATGACGAGAGCGGTTTTTGCCCGTGTCCCGTGCCCTTTAGGGCTGAAAAGTTACATAATCAGCCTTAAGGCTTATTCTGCAAATTGACAACTTCACAGCAGGTTTCAATTTCTGCGTCGCCCCATGATAGTGTAAAAGGCCTGGAGGGGCGACGCAGGTTTAAAAACATCGTTGACCCTTGTTACAGCAGTGTTGATTTTTAATTTTGATCCAGCCGGATATCGGCATAGTGTGGTACAATCTCTTAAAGAAGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAAAGCTTCCTTTAGCAGGGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1926195-1934005 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1926195 30 100.0 35 .............................. TTGTTGGGATGGTGGACAATATAATATCCACCAGT 1926260 30 100.0 36 .............................. GACAGCTCGCAGGTCCCCGCCAGGTATGCCGGGACC 1926326 30 100.0 37 .............................. TACATCGTCCTCGACCTCCTCGTCGTGTCGTGCCCAG 1926393 30 100.0 36 .............................. AAGGATGACCATACAAGCGACAGGAGGTGCTCCATG 1926459 30 100.0 36 .............................. TGGTGGCCCTGTCGAGGTGCGGGCAAACAGGCGGAA 1926525 30 100.0 36 .............................. CGGATTCCTGAATGCGAATCGGATGCCGCTTCGTGC 1926591 30 100.0 37 .............................. AAGGGCTCCGAAGACCTTCTCCCTCAAAACCCCATCC 1926658 30 100.0 37 .............................. GGTAATCGGCCTCGACTTTCACCGACAAGGTTTTCTT 1926725 30 100.0 37 .............................. AGGTCAAGCTTACGCGAAAGATAAACGTCCAGATCGA 1926792 30 100.0 38 .............................. TACCCACACTCCCTAAGCGCATAGGCGATATGGCGCCA 1926860 30 100.0 37 .............................. GTCGAACGCGAACGAAGAACGCAAGACGCGCTGGAGC 1926927 30 100.0 37 .............................. TCCGCGCCTCTGGCGGAACTTCATCAAGGAGGCGGAG 1926994 30 100.0 36 .............................. AAGATACGAGTGTTCCACGTTCGCCTCAGGGGCGTT 1927060 30 100.0 38 .............................. CAGGGCTCGCCCTGCAGAGCCTCCTGGAGCACGGGGTT 1927128 30 100.0 37 .............................. AGTATTGTGAGATGGCGAAGAAGAGGCTTGAGGAGCT 1927195 30 100.0 35 .............................. ATGACGATCCTCTCCGGGAACACATCGATTCGCTC 1927260 30 100.0 37 .............................. TAGCCCATATCCCTTGATACAATATCCGTATTCCCAA 1927327 30 100.0 37 .............................. AGGAGAAAATTTCGGAACTTCGGGAGAACGCTGAGGC 1927394 30 100.0 37 .............................. TCCGTGGAGCTGCAGAGGCCCTCCAGAATCAGCCCCG 1927461 30 100.0 38 .............................. GTAAAAAAACTGCAAAAATGGGCTCTCAGAGCGTCACC 1927529 30 100.0 36 .............................. CCTTCTCTTTTGTAGTCATTTTTGTTCCTCCTATTT 1927595 30 100.0 37 .............................. TCTGCATGGGGACAGGGTGTATCTACCTTCCCTATAT 1927662 30 100.0 37 .............................. AGTACTTGAAAACACTCGTCTTCTTTGACTTGGGGCT 1927729 30 100.0 37 .............................. TGAGGAAGCAGGGATCGGTGTAAACACAGACAGTGAC 1927796 30 100.0 37 .............................. CTGAGTCTTCCCGTGGTAGGCGTCATAAACACTGATT 1927863 30 100.0 35 .............................. TTCATTCTGCAGCCTCCTCACTCGATTACAGTTCC 1927928 30 100.0 36 .............................. ATGGGGGACAGGAAGATGCGGGCGAAGGCTTCGATG 1927994 30 100.0 37 .............................. TCGCAGACGATTGGGATATGAGGTCCCGGCCTGCAGC 1928061 30 100.0 37 .............................. GCATTTGCAACACTTTCCTCAAGTGCTAAGAGAAAAC 1928128 30 100.0 38 .............................. GGGAACATGGGATAGATAGATCGGAAAAGTGCAGGCTA 1928196 30 100.0 37 .............................. TAAGGTGAGTCATAGCAACGGTTTTGCGGACCCAATT 1928263 30 100.0 35 .............................. TTCAGGAAGGCGACGAAGGCCTCCCCGATTTCCAT 1928328 30 100.0 37 .............................. TCCGTAGAGCTGTAGAGGCCCTCCAAGATCAATCCTG 1928395 30 100.0 35 .............................. ATGCAGAAGTGGCCGCAGAGCTCGCGGCGATCGAG 1928460 30 100.0 36 .............................. TTTCCCGGAGACCGCCAAGCTGTCGAGACCGGCGTG 1928526 30 100.0 38 .............................. ACAAACTCCATTGTGCACACATATCCGTACCACAGGCC 1928594 30 100.0 35 .............................. CAGAATGTGGGCGACTCCGAAGGCCGGGGACGCAA 1928659 30 100.0 36 .............................. CCCGGTGTGGCCAGCGTGTACGGGAGCCTGGACCTT 1928725 30 100.0 38 .............................. TTTTCCTTCCCTTCATAAGCCCTCTTGGAGCTTGGATT 1928793 30 100.0 37 .............................. AAATGAGCTCTGAGGAAGTGGACGCCCGGCTGCGGCA 1928860 30 100.0 37 .............................. TGATGTGGGCGCAGCCTTCGAGACTGGAATTGTACAC 1928927 30 100.0 37 .............................. CAGTCTCGCCGGACGGTCGTACGCTGTCGGGGAAACT 1928994 30 100.0 38 .............................. ATGCCATTCGTCTGTATCACAGGCTGCACGGCTTTAAC 1929062 30 100.0 36 .............................. AGGTCCACGATGCGGGAAGCAAGCCGTACCATGGTC 1929128 30 100.0 36 .............................. TAAATATAGGTCCTGCAAGGGACCACACAAAATGAA 1929194 30 100.0 36 .............................. ATCCTGATATTTTCCCTCAGCGACAACACTTTACGC 1929260 30 100.0 38 .............................. TAGGTAGCTGTAAGACCGGTCGTACCAACGGTTTAGCT 1929328 30 100.0 35 .............................. TCGTAAGCGATAGCCCTTTCAAGCCAATCCCACTC 1929393 30 100.0 38 .............................. TCGCTACTGCCATGCGACGGAAGAGTCGAGGCGGGGCA 1929461 30 100.0 36 .............................. GCGCAAAGGTTAACAGAGGAATATCCCCCTGGCTTA 1929527 30 100.0 36 .............................. TCAAGGTCTTCGGCGAGGTGTTTGAGGCTATGGCTA 1929593 30 100.0 35 .............................. CAAGCTCGCCTCCGCCCCAGGACAAAAGCGGACAC 1929658 30 100.0 35 .............................. CCGGAGGTGAATGACACCAGCACGGCATCACCGGG 1929723 30 100.0 37 .............................. GATGGCGCTTTCGTCTTCCTTCGGGGCCTCCAGCCAG 1929790 30 100.0 35 .............................. CCATTGCCGGAAGGGGCGCCCAAACCGCTCGCCGA 1929855 30 100.0 35 .............................. CAGAGTACCTCAATGCCCACTCTGGGATGGCCGGG 1929920 30 100.0 37 .............................. CAGAAAAGGCAGCGGCAATGAAGGGCTCCCAGGTTAA 1929987 30 100.0 37 .............................. AAGATATGATTTTTTCAGCAAAAACAAGAGGTTTTTC 1930054 30 100.0 37 .............................. GGGTCTTGGTATTCGCTGCGCTTTGGGAGCATCTCTG 1930121 30 100.0 37 .............................. CTGTCCTCGTAGGTGGCGGAATACTCGTAAAGCTCGC 1930188 30 100.0 36 .............................. CCGCAGTCGGCGGGGTCGTGCAGGTCCCCGGAGACG 1930254 30 100.0 38 .............................. GTACTGGGTTGACTGGCTGGACCTGCCCCCCATCCACC 1930322 30 100.0 37 .............................. GCGTCGCCCCGGCCTTCATAATTTTGGATACGACATC 1930389 30 100.0 35 .............................. CAAAACAGCAAAGGAGACGCCCCACAAAGAAACCG 1930454 30 100.0 37 .............................. CGGATATCTTCAACAACGCCTCGAATCAATCCGCCTT 1930521 30 100.0 36 .............................. CGGATGAACTGCCGATTCGACGGCGGAAGCCGCCCT 1930587 30 100.0 36 .............................. TACGCCGCTGGAACGAACGGCACGCGGCATCGAGGA 1930653 30 100.0 35 .............................. GCTGAACGCTTCGCGGCCCTCGTCCTCGCTAAGTG 1930718 30 100.0 37 .............................. GCTGAACGCTTCGCGGCCCTCGTCCTCGCTAAGTGCT 1930785 30 100.0 37 .............................. AACATGGCCTCATAGGTCCCGGTCATGTTCGGATGGG 1930852 30 100.0 36 .............................. TGGCTACGAGTTCAGGTCTGCCGGTATCTTTTCCTT 1930918 30 100.0 37 .............................. CAGATACTCGGCGGCGCCGCAACAAGCGTCATGAACG 1930985 30 100.0 37 .............................. CGCCGACGCCTCGGCGGACGAGGCATGGCACATCCCG 1931052 30 100.0 38 .............................. CGATACTCCGCAGCGTCGCCCTCCCAGAAGATACGAGG 1931120 30 100.0 37 .............................. GACAACCGAGTGTCCACGAAAAGCACCCAGTCGCCAT 1931187 30 100.0 36 .............................. CGCATGAATTCACTCCCGGCTATGGCCGCGATGCGG 1931253 30 100.0 37 .............................. TGATGGGGAGGCGGAACCCGACGAGGAGGAACCTTCG 1931320 30 100.0 35 .............................. TTACATTCGCCACGGCTCGTCTAAACGCGCTCACG 1931385 30 100.0 36 .............................. TCGTAGGGGGTGATGCGAAGTCGGGAGACAATTCTC 1931451 30 100.0 39 .............................. CACCTGCGACCCTGATGTCTTCGCCCAACGTCGCAGGCT 1931520 30 100.0 37 .............................. TACAGGGCATCACTAACAGCATCGGGCCATTCATGTC 1931587 30 100.0 36 .............................. CGTCATGGGGAATCTGACGGGCAGTGGACCGAGGAA 1931653 30 100.0 36 .............................. ATGCGCCGGTCGTCGTGCGAGAACTCCCCGATCTTG 1931719 30 100.0 36 .............................. GAATGCTGGTGGCAGGAATCCTGTTTGATGCGGTAC 1931785 30 100.0 37 .............................. CGAGGATATCACTGCTCTGGCTGAGCAATTCGGCATC 1931852 30 100.0 37 .............................. GGCTGAAACGGTCGGAGTCCGGAGGCGGGGTCGGCAT 1931919 30 100.0 36 .............................. ACGATTTTGTGCCTCGTTTTGTGCCTCATCAATGAA 1931985 30 100.0 36 .............................. TAGCTCTATCACGGCAGAGCGCAGGCCAACGCGTGG 1932051 30 100.0 37 .............................. AGCGTCTTGGAGGCGATCTGCGTCTCTCCTATCCACG 1932118 30 100.0 36 .............................. GTCGGCCCCCCGCGATCAGCCCGCGACCTCGGCTTC 1932184 30 100.0 37 .............................. CGCTGAGGGGCATACGCTCCAGCAGGTCGGCGAAGTA 1932251 30 100.0 35 .............................. CGTTGACCGGCATCCTGGGTGGAGATGTCGTATCC 1932316 30 100.0 36 .............................. AAGGTCGATGAGATTGGAATAGGGCGTGGAGTTGTC 1932382 30 100.0 37 .............................. CGACTACGCGCAGCATGTGGCCATTGGAGAAAGCCTC 1932449 30 100.0 36 .............................. CACGCTTCCTTCCCCCGCTACATCCAAGGGGCTGTC 1932515 30 100.0 36 .............................. TCGCTGCCGGGCTCGGTGTCCGAGGAAGCCATGAAG 1932581 30 100.0 35 .............................. TTTACCCAGCGTAACGGTTTAAGGAGGTGTCGTCG 1932646 30 100.0 37 .............................. TGCCAAGCAGGGACCTCCCGGCCCGCGGGGCCCTGTG 1932713 30 100.0 37 .............................. ATGCATGATCAACGAAATTCTTAAGTGTTTGTTTGCG 1932780 30 100.0 37 .............................. GCAGGACACCATACTTCTTGCCTTGCCAGCTCTTCGG 1932847 30 100.0 35 .............................. ATCTGATTCGGACGAAGGACAAGGACGGGCGCGGG 1932912 30 100.0 36 .............................. ATACGTCGCCAGTGAACACCAGGTAATCCTGCTCGC 1932978 30 100.0 37 .............................. CAAGCCCCTTGAATGCCTGGGGGAATCGCTGAAACGC 1933045 30 100.0 35 .............................. TGCTGTGGGGGATAGTAAAGTGGCGACCTCCCTAG 1933110 30 100.0 36 .............................. AGCAGCGCCAGGGCGTCCTCGTCCGCCTCCAGCACG 1933176 30 100.0 37 .............................. CCAGGCGTTCCATCAGAACCGCGAGGCGTGGGACCTG 1933243 30 100.0 37 .............................. ATCGTTTCCATGGTCTTCTCCTCCTGCGGCCCGTGGC 1933310 30 100.0 37 .............................. CCTGGGCGCGCAGAAGCTGGCGATCAAGCCGCCACTC 1933377 30 100.0 35 .............................. GTCGTCGGAGCTGAGGTTGTTCTGTGCTGTGGGGG 1933442 30 100.0 36 .............................. AGGCTGGGAAGCTGCCCAACCTGGCGTACTGCAAGC 1933508 30 100.0 36 .............................. ATGTGGTGCTCTGCGCAGAACTGCGAGCTGCTCTTC 1933574 30 100.0 37 .............................. GATGACGCCTGAGCCGGGCGTCTGGGGCGATCTGGAG 1933641 30 100.0 37 .............................. TCCCAGACCTACGGGCTGGACCCGTTCGCCAAGGAAA 1933708 30 100.0 38 .............................. AAAAAATCCGAAGGGGGTTGGGGTTATGAGCGAAGAAC 1933776 30 100.0 37 .............................. CGAGCCCCTGCGGTTCCAGTTTACCGGTGAGGGCGAA 1933843 30 100.0 37 .............................. AGCCCTTGTGCCAGATACCCACCAGGTCCTGAACGGA 1933910 30 100.0 36 .............................. CCTAAAAATCAATGACCATTTGGGCGTTGTTTTTAC 1933976 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 118 30 100.0 37 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Left flank : GATATTCTGCCAGCTTTTTTAAAGAGGGTGGAACTTGATCTCCAACGATAGGGCCATCCGAGCGTATTTGGATGTACAATGGAATAGGATTGAAGGCGGCGCTGCCGGCGTGCGTGTTTCGGCACGGGGATGGCGTACCGTGCTGCTGTAGAAGCTCGGTCCTTGTGCCATTTTTTGATGGAGCAGCGCTTCGTTGAGCGCATCCTGAACGTGTTTGAAGCGCATGACGAGAGCGGTTTTTGCCCGTGTCCCGTGCCCTTTAGGGCTGAAAAGTTACATAATCAGCCTTAAGGCTTATTCTGCAAATTGACAACTTCACAGCAGGTTTCAATTTCTGCGTCGCCCCATGATAGTGTAAAAGGCCTGGAGGGGCGACGCAGGTTTAAAAACATCGTTGACCCTTGTTACAGCAGTGTTGATTTTTAATTTTGATCCAGCCGGATATCGGCATAGTGTGGTACAATCTCTTAAAGAAGCTTGTTCCTGTCTTGACGTAACGG # Right flank : CCACCGATCATTTCCATCCCCCCCTACGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 1938692-1935136 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1938691 30 100.0 38 .............................. CCGGAGGAACGCCGCAGAGCGGGGGCCTGCTGGGCGGA 1938623 30 100.0 38 .............................. GTGCGCTCGGCGCATCCAGCCGGAGATTGGACGGACGA 1938555 30 100.0 37 .............................. CAGGTCCCACGCCTCGCGGTTCCGATGAAACGCCTGA 1938488 30 100.0 37 .............................. GGCGTTCGGCGGGGACCGGTGCGTGGTGTTCCTCCGG 1938421 30 100.0 36 .............................. CCCTCACAACCCTGGCGGCCGGGATGCAGGGCGGGC 1938355 30 100.0 38 .............................. GGAGGCGGGGTCATTATACCCCGTCTCCTCCGAAAGAA 1938287 30 100.0 35 .............................. CGCATAGTGTCTCGACTTCGTATCACTCCCAACGA 1938222 30 100.0 37 .............................. ACGCGGACCTGTTCCTCATGCTGGCGTCGAGCGACGT 1938155 30 100.0 36 .............................. GACGATGCCGAGCCGAATCAGGGGGACCGAAAGGAC 1938089 30 100.0 37 .............................. GAGAAGATCACAAATTCCTGCCTAGCGTAAAACTCAG 1938022 30 100.0 36 .............................. CCGCTGCCAGCCGCACACGCTGCTCGTCGCTATCCG 1937956 30 100.0 35 .............................. GACAAATCAACATATCCCCTAAAGTTGGACAGTTT 1937891 30 100.0 37 .............................. ATGGGGCCGGTCGGGGTGGAGTGCCGGTTCATCAGCG 1937824 30 100.0 36 .............................. AGGCTTTACCACTTTAATGCGAGTGGTACAACCTTA 1937758 30 100.0 35 .............................. CATGTTCCACCACTTCCGGATATGGCAGGCACCGA 1937693 30 100.0 35 .............................. CGCACTACGACCGCGTTCAGGGGCCTCCGCATCCC 1937628 30 100.0 37 .............................. TCCATATGGATCAGGATATCCCTGTCCCTCCTGTATA 1937561 30 100.0 38 .............................. AGGGACAGGGATATATTCTGGTGGTCCATATGCACAGG 1937493 30 100.0 37 .............................. GGGCGAGAACAGGGCCGCAGAATGGGCAGAATTTACG 1937426 30 100.0 37 .............................. GCGAATGAGGTGTGTCTTGCCTGCCCCCGCCTGCCCG 1937359 30 100.0 36 .............................. GGCGAGGTGACGCCGATCTTCGGCGAGCTCTACGCG 1937293 30 100.0 36 .............................. AAGCCCTCGTCCTGGTTTCAGAACTTATTTCTTCGA 1937227 30 100.0 37 .............................. GCTTCGCGTCCCGCTGTCGGATGCAACATTGATATCC 1937160 30 100.0 36 .............................. TCAGCTGCTTAACCTCTCCGCCTTCACCCTCACCGG 1937094 30 100.0 37 .............................. GCGTCGGCGTCCTGATGAACGGCATCCTTGACGCCTT 1937027 30 100.0 36 .............................. AGCCCATCATCCAACATAGCGGCGACAGATTCAGCA 1936961 30 100.0 37 .............................. GGCCCCAGCACCACCAACTCCACCTTGACGTATTGGC 1936894 30 100.0 37 .............................. GCGTCGGCGTCCTGATGAACGGCATCCTTGACGCCTT 1936827 30 100.0 37 .............................. GCGTCTGGAACGCATCGAAAACCTCGAAGAGGATATC 1936760 30 100.0 35 .............................. CTCCTCATGGCAGATGGGACACTCCACGCGCTCTC 1936695 30 100.0 35 .............................. GACCATCGACATCAGGTCCGGCGACGAGACCCCCG 1936630 30 100.0 37 .............................. GGAATCTATTGTTGAGGCTTAGTATCGCCGCAGATAT 1936563 30 96.7 37 .........................T.... GACGAAATTACAGCGGCAGGTTGGTATTTCGTCAGTG 1936496 30 100.0 37 .............................. TGTGCGGCCATGCGGGTCTTGTTGATATCGCTCGCCG 1936429 30 100.0 36 .............................. AAGAAGAGGAGCGGCTTTCGCCGCCCCCCTCTCGTT 1936363 30 100.0 38 .............................. GATCGAGGCAGGGAACCGCTTAATAGAGGACGCCGCGC 1936295 30 100.0 37 .............................. GCCTCGCGGCGCTTCCGCCTGCTCGTCAGCACCTCGA 1936228 30 100.0 37 .............................. CCATGGGTGGCGGCAGGGGGTCGTCCTTGCCTCTGTG 1936161 30 100.0 36 .............................. AACGAGACGAACCTCGTGAAGGTCGCCGAAGACAAG 1936095 30 100.0 38 .............................. GAGAGATACCTTTATCCTGCCTTCGGAGGACGCGACGT 1936027 30 100.0 37 .............................. GGGACCTTCGGGCTTCACCGAAAGGCCCACTACTTGT 1935960 30 100.0 36 .............................. TCAACGCAATGATTGAGGAGTTGAGGTCACAGGGCT 1935894 30 100.0 36 .............................. AGGCGGCGCAGACGGCCCAGCAGGGGGCCGGGGCCG 1935828 30 96.7 37 .........................A.... GAGGCGTAAAACGCACCGTGGAGGAGATACGGAGCTA 1935761 30 100.0 38 .............................. AGGAAGCACCTTGTCCTATATGGCCATGTCGAGACAGG 1935693 30 100.0 36 .............................. GCGCCAAGCGGAGAGTCGTGGTGGTCCACGTTCCCG 1935627 30 100.0 35 .............................. CCGTGGATGTCGCTTGGCTGTGCGCTCCTGAAAGA 1935562 30 100.0 36 .............................. TCGGGCCTTTGATATCTATTACCCGATCAGGGTAGA 1935496 30 100.0 36 .............................. GGCGAAAGCGTGAATCGATTCCCGGCTCCTGGCCCG 1935430 30 100.0 38 .............................. GACGAGACCTGCGTGTTTGAGGTGGAGGAGGGGAGCTA 1935362 30 100.0 35 .............................. TCGACTGGCGGGACTCAGCCTGAGGCGAGTTAGCG 1935297 30 100.0 36 .............................. CCTGGGGAGAACCAGGCCCAAAGACCGCGGCATTCG 1935231 30 100.0 36 .............................. TCGAATAGCTAGGAGGACCTTTATTGTATCACGAGA 1935165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 99.9 37 GTTTCCATCCCTCTAAGGAAGTTTAGGAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAATACCCTATTCCGTTCTACATTGT # Right flank : GCCACTGACGTTGACGAAGACCGTCCCGTCGTCATGCAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGAAGTTTAGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 1940120-1945597 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1940120 30 100.0 36 .............................. CCGTTATTTACGTTCCAATCAGCCGGCAGTTTCATC 1940186 30 100.0 38 .............................. GAGCGTAGCGTCGCCAGATACCCGCGCGCCACAAGCTC 1940254 30 100.0 37 .............................. AGGGCGGCATCCGGGGAATACGGAGTGTGGCGTAACA 1940321 30 100.0 37 .............................. TTCAGCGAGGAGGCGTCCAGCCCCTGGTTGTACCGGG 1940388 30 100.0 35 .............................. ACGATGTTGTAATTCGCAAACAGCTTACGTCCCTG 1940453 30 100.0 35 .............................. CTGAACCTTCTCAGTGGCCATGTCGAACAGCTCCA 1940518 30 100.0 35 .............................. ACACTGAGAAAATCTCTATATCCCTGAGAGGTCAA 1940583 30 100.0 36 .............................. CCCGGAGCGCCGGGCACGAGCCGAACGCCTGATGGA 1940649 30 100.0 35 .............................. CGGCAATGTCCCTGTTTTAAGGGGCGGGGGGAGGC 1940714 30 100.0 37 .............................. CTCTGTCAGGAAGCGGTCGGCCGCTTCGATCAGCTTC 1940781 30 100.0 36 .............................. GACCGATGGGCTGCACTTCCTTCCCTGGAAGACCTA 1940847 30 100.0 37 .............................. ATTTGAACATGCATAGCGCTAACGACCTCCCGCCGGA 1940914 30 100.0 36 .............................. CGAGCACTCGTGCGGGCTGTAGGGGCTCTTGGTCAT 1940980 30 100.0 36 .............................. CAGTAGTGTTCTGCCACTCCCGCCCCTGTTGGGTTT 1941046 30 100.0 36 .............................. TAGCGCCCCTTGCGCCCTTTTCAAGGGCCCGGTTCG 1941112 30 100.0 37 .............................. GCAACCCGCCATGGCGAGCTTCCCAATCCGCAACATG 1941179 30 100.0 37 .............................. CAGGCAAATCAAGAAGGAGGCGACGGCATGATGCGGG 1941246 30 100.0 37 .............................. TCCGTGGCGCCGACTCCAAGAAACAGGACTCTGGCGG 1941313 30 100.0 37 .............................. TCTCGTGCTAACTTAGCAGAAAAGCTGGAAGTGGGCC 1941380 30 100.0 37 .............................. CCTACCCAAGAAACACCCCGTCAAAGATGGGCGGAAA 1941447 30 100.0 37 .............................. TAGATTGGCTGCCATATCCAATCGAGGCGCTCGGTGG 1941514 30 100.0 36 .............................. CTAAAAAGTCCCAATATGGGAAGATTAATACATGGG 1941580 30 100.0 37 .............................. CGTTCGCGTCGAAATACGGCAGTCCGAAGGGGATATC 1941647 30 100.0 37 .............................. GTCGATCGTCGGCGCAGGCGGCGGCGTCTCCACCTTC 1941714 30 100.0 37 .............................. TCCGATACCTGGGGTTCTGAAAACTGCGCGGACGATT 1941781 30 100.0 38 .............................. GTCGCCCCGCTGGTATGGAACCGGCGAACGGGAACGCT 1941849 30 100.0 38 .............................. GGGTTTGCGGAGTTTTTAAAAATGCTGCTGTGGCAGCC 1941917 30 100.0 37 .............................. CGTCAAGAAATTGCCCATCTTAAGGCGGCACTTGAGG 1941984 30 100.0 37 .............................. CGCGCCATGAAGCGTCAGGAAGACGCTATCGTGTATC 1942051 30 100.0 36 .............................. CGGGCACGGCGGACGACTTCGCAGGAGGGGCCTTCG 1942117 30 100.0 37 .............................. AGCAAGGCTCCCATCTTCTCATCCATAACGGCGTGCA 1942184 30 100.0 38 .............................. AGGCGAACCTCGATACCCTGCGGATGCTCGACCCGTCC 1942252 30 100.0 36 .............................. TCCGAACTCGTGACCGCCGATCAGCTCGGAGACGGC 1942318 30 100.0 36 .............................. CGATGTAGAGCGTCGTCGGCCCAGCTCGTGGCGGGG 1942384 30 100.0 36 .............................. TCAGAAGATCTACTCTGCCAGGGCGTGTAAACACAG 1942450 30 100.0 36 .............................. CGGTAGGTGTAGCGGCCCTCGATGCCGCAGGGCTCG 1942516 30 100.0 35 .............................. CCGAGACACTCAAAAGGAGTACGGAGGAAATCCTG 1942581 30 100.0 37 .............................. ATCCCGTACTGCTTCGCCAAGCGAATGCATGTTTCAA 1942648 30 100.0 36 .............................. CAGCAGTGAAGTACAAACTGACGGGGCGCGGGCAGG 1942714 30 100.0 39 .............................. CGGCATAGGGGCCGTGATGCAGAGGTCCGGGATGGGGCC 1942783 30 100.0 36 .............................. TATGTGTGGATTGCTGGGCCACAGGGGAAGCGATAG 1942849 30 100.0 35 .............................. AGTGCCTTGAGATACGATTCGCTGACATTCCGCCA 1942914 30 100.0 35 .............................. AGCCATTGTACTGGCCACTGCCGGCCATACTTCTC 1942979 30 100.0 35 .............................. TAAAAACCCAGAGCCGCCTTCATTTCCTCATCCTG 1943044 30 100.0 36 .............................. GCACTCAATACGCCCACGCCGAACATGACGGCAGCC 1943110 30 100.0 35 .............................. TATGCATTCCATCGTTCACTGTCGCCATTTATCTC 1943175 30 100.0 37 .............................. TTCCTCACCCAGAACCTGAAAGAACTCTCAGCGAACA 1943242 30 100.0 37 .............................. AGAAGGAGTGTCATTTCAAGATGAAACTGTACTGTTC 1943309 30 100.0 37 .............................. CTCAGCTAGTCATCGTGCCCTGCTTCTTCCCTACGCC 1943376 30 100.0 35 .............................. TACGAAGGTCGCGTAATACTCGATGGGGAACGGGC 1943441 30 100.0 37 .............................. ACCATGCAGACTTCCTCCTCAGCAGTGACAAAGCGGT 1943508 30 100.0 37 .............................. CGACCTGCGCGTCCTGAACAAGCTGTTCCACACGGAC 1943575 30 100.0 35 .............................. CCATCCCTTCATTCATGGAAATGACGCCTTGGCAA 1943640 30 100.0 35 .............................. ATTCGGCTCAGGAGTGGATGAACGAGCGCATCCCG 1943705 30 100.0 36 .............................. TCATTCCGACCTGCGCCCTTCCCTTGAGTTCTTTCA 1943771 30 100.0 36 .............................. AAAGAACTCTCAGCGAACATGACGCCGAGGACCAGC 1943837 30 100.0 36 .............................. GGTTTATGCAGGAAGTGGATATCGAATGGCGGAGGG 1943903 30 100.0 37 .............................. AGCGTGATCTTCCCGGTCGTAGCATCGACCGTATCCA 1943970 30 100.0 38 .............................. CTTTCGCAGTTCCTCGTGTGTCATGCCATTTCCTCACC 1944038 30 100.0 38 .............................. CGATGATGACGGGCATTCACAGGACTTCTGGCTGTATG 1944106 30 100.0 38 .............................. TCCAGGTCCCACCTCCGCCGGTCGGCGGTCCGGAATAC 1944174 30 100.0 36 .............................. ACGAGGGGCAGCTCAATGTGCAGGGTCTGCATCTTG 1944240 30 100.0 37 .............................. TAGTCCAGCCCTTCCGGCCCCATGATGGACTCCACCC 1944307 30 100.0 35 .............................. CACCATCAGGGGAGGTCGCCGCCTTGTTGCCGCTT 1944372 30 100.0 37 .............................. TCTCCCACAGCGCAGAATACCCCCTGTTCCGGCGACC 1944439 30 100.0 36 .............................. CTGTAAACCTCAAGCCGCTCGATACGTTGCCCCCGG 1944505 30 100.0 36 .............................. GATAGGAGTGGCGAATCCGCCAAATCAAAATTCAGA 1944571 30 100.0 37 .............................. GCTGTTCACGGGGGCATGTTTACAACGTTGAAAGCGG 1944638 30 100.0 36 .............................. TGCCATGCGGCGGCAACTCATCTATCGGGCCTTTGA 1944704 30 100.0 38 .............................. TACTCCCCAAGCCTGTAACCCCAAGCCTCAAGGCTGTG 1944772 30 100.0 36 .............................. CCTCGTCCTTCCCAAAAGGAACGCGAAGTGTCCTCG 1944838 30 100.0 37 .............................. GAAATCGTCGTTTTCTTCATCCGTCGTTTGCTCCTTC 1944905 30 100.0 36 .............................. AATCGGCGGCCGAGGAGTACGTCGTTATCGACGACC 1944971 30 100.0 36 .............................. AGGTTTTAGGGCTTAAAGGTGCGTCCGAAGGGCTCG 1945037 30 100.0 37 .............................. ACAACCAGGACGCCGGGATGTACAGGACCTTCATCAA 1945104 30 100.0 36 .............................. GGGTTCGACCCGCTTCCGGAGGGCGAGTACACGGTG 1945170 30 100.0 37 .............................. GTCTCCATCGAGCAAATACAACGCAACACCGGCTGCC 1945237 30 100.0 35 .............................. TGTTGGGTTGATACCATTGTGGGGTAGAGCGGGCC 1945302 30 100.0 35 .............................. AAGTGGTGGATGACGACCCCAATAATCCCTTCCCC 1945367 30 100.0 37 .............................. CGTGCGACAGGACGATGATGCGGCGGTCTTCGTGCCC 1945434 30 100.0 37 .............................. ACCAATCCCAGCACGTCACATACGTCTTTCGCCACCC 1945501 30 100.0 37 .............................. ACGTCCAGCCGGACGTCCGTGAACTTGGAGCGCAGCG 1945568 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 83 30 100.0 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTTGGGCTTCCTTAGAGGGATGGAAACACACAAGAAAAGAAGGTAGAATAGTGTCTTCGCTGCG # Right flank : CCCGCTCCCGGTGGGCGCCACGATGCAGAGGTCCCCCCTTCCTAAACTTCCTTAGAGGGATGGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 5 1946324-1952269 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1946324 30 100.0 36 .............................. TCGAAGAAATAAGTGCTGAAACTAGGACGAGGGCTC 1946390 30 100.0 36 .............................. GCAGGCGAAGGACCGAAGCGGGCGCCTGGACACGTG 1946456 30 100.0 37 .............................. CAGGACCAGCTCCGGCCTGACCGTCATCGTCTCCGAG 1946523 30 100.0 37 .............................. CCCGATAGCCTATTGGCGCAAGGAAGACGTCATGGAC 1946590 30 100.0 37 .............................. AAGAAGAACTCAGCCTGTTCCTCCGGTTTGTAGTCCA 1946657 30 100.0 37 .............................. AAGAAGAACTCAGCCTGTTCCTCCGGTTTGTAGTCCA 1946724 30 100.0 38 .............................. CGGAGATAGAAAGGGAGGTGAACACATGAGCCATACGC 1946792 30 100.0 38 .............................. ATGAGTGTTTCATCTACAACAGCCCGCCACTGGTTCGA 1946860 30 100.0 37 .............................. GTAAACCACGGTGGCGTTATAGCATCTTGCAAACCAT 1946927 30 100.0 35 .............................. AGTGAAGCGGGTGCGCACTGAAGGTGCTTAGTGTT 1946992 30 100.0 38 .............................. GCCGATGCTTCCAAGGTATTCGGAGAGCGCGCAGCCAA 1947060 30 100.0 36 .............................. CGATATCAAGAGCAAGACGGTCTGGCGCGGGGACCA 1947126 30 100.0 35 .............................. AGGTTTCCTCGTCATATCTTCTGGGCGAAACTGAC 1947191 30 100.0 37 .............................. TTTCTTTGGAGGAGACGGGGTATAATGACCCCGCCTC 1947258 30 100.0 33 .............................. AAAAATCCGAAGGGGTTGGGGTTATGAGCGAAG 1947321 30 100.0 36 .............................. CTGGTCGAGATAGTCCCAGTCCTCGACAGGTTTCCC 1947387 30 100.0 37 .............................. GAGAGCTCCAGCACGTCGCACACGTCCTTCGCCACCC 1947454 30 100.0 38 .............................. CAAGTGCTGCTGAAGGTTCTGGATTCGAGATCGGCGAC 1947522 30 100.0 38 .............................. AGCTGCCTCTTGTCAGCGAAGCCTGCATGTACGGCGGG 1947590 30 100.0 36 .............................. TGGTCTCCCGCGGGGATCAGTCTGGCTTGGCTCTCC 1947656 30 100.0 36 .............................. GACTGGCTTGACGAGGAATCCTACAGAAACGGGGGC 1947722 30 100.0 37 .............................. CGGTCCCGGACCTCCTCTCTCCGTCCGTCCAGCTCAC 1947789 30 100.0 36 .............................. TGGTCTCCCGCGGGGATCAGTCTGGCTTGGCTCTCC 1947855 30 100.0 36 .............................. GACTGGCTTGACGAGGAATCCTACAGAAACGGGGGC 1947921 30 100.0 36 .............................. ACAGAACACGAGGTACTTCCCGCTCCCTTCCGGTGA 1947987 30 100.0 37 .............................. CGGTCCCGGACCTCCTCTCTCCGTCCGTCCAGCTCAC 1948054 30 100.0 37 .............................. TGGAACGGCCTGCATGAGAGGATTGCCTATCACGGCA 1948121 30 100.0 37 .............................. GTCTCATCAGGCACCGCCTCACGGTGCGACGCCCCCG 1948188 30 100.0 36 .............................. CTACGACGGCGGGACCGCATCTATCCGGCAGATCGG 1948254 30 100.0 36 .............................. TTCTTTCGGAGGAGACGGGGTATAATGACCCCGCCT 1948320 30 100.0 37 .............................. AGCTGACACAAGAGCATATTTCGGGCAAGGGGTTCTC 1948387 30 100.0 37 .............................. TCGGCTGGTCGAGGAAGCTCAGAATATTTTGTGCCGC 1948454 30 100.0 37 .............................. CCCATACTCCCCCTGTGGCCCCGTAACCACAGGAGGA 1948521 30 100.0 35 .............................. CACCAACACGCCCTCCAGCACGATCTGACGCAGGG 1948586 30 100.0 36 .............................. GTACAAACCGCTTTTCCATCTCAATTCCCTCCTATG 1948652 30 100.0 36 .............................. AAACATCTGGTAGGCTCTATCTCTCTTGTCCCTTCA 1948718 30 96.7 37 .............................A CGTGCAGCTCCTGCGGGAGGAGTTCGGGATTTCGGTC 1948785 30 100.0 36 .............................. GGTAAACAATTCAAAACAGCAACAACATGGGGATGG 1948851 30 100.0 37 .............................. AGCTTCGTCCACGAGCCATTCCACAAACTGCGCGAGC 1948918 30 100.0 36 .............................. TCTGATCCCCGCGTCCGTGGCTGGAGTAGCCTCTGG 1948984 30 100.0 37 .............................. ACAAGTAGGGGCCCTTTCGGTGAAGATTCCGAAGGGC 1949051 30 100.0 35 .............................. CACGACTGGACGGAGCATAACGATTGGGCATCAAA 1949116 30 100.0 36 .............................. TCAATATGACCATACTTGAGCATGCTCAAGCATGGT 1949182 30 100.0 35 .............................. ACCCACAGTCTTCCCGGACGGCGGACGTTTCTCGA 1949247 30 100.0 38 .............................. TCGGGCGCTGTTCCTGCCGTCCCTGTTGGGAAGCGGGG 1949315 30 100.0 35 .............................. TGGTGCGCATCACGCGCCCAGGGCTGGAGATCATC 1949380 30 100.0 37 .............................. TCGGCGTGCGCCACGCTCATGTGTAGCAGGGGGACGT 1949447 30 100.0 37 .............................. CTCGTACGTGAGGTCCGGCCGAACGACCGGCGCCGAT 1949514 30 100.0 35 .............................. AATAAAAATAACAACCCAATTTCAACATTTAATTG 1949579 30 100.0 37 .............................. CATTGAAGCGTGAGGCGCTCCCTGTGAAGTGGTCCCA 1949646 30 100.0 37 .............................. ACTGAGGCTGCCGTCGTGTTCAGCATGAGCGTATTGG 1949713 30 100.0 35 .............................. GTGTTTCCGACGACGTATTTCCAGATGGAAATACC 1949778 30 100.0 37 .............................. CGTGAGCTCCCTGCCGCCTAAGACCCGGTATGAAGCC 1949845 30 100.0 37 .............................. CGTCCTCACCGGGGCTCCGGGGACCATGAAGACGAGC 1949912 30 100.0 37 .............................. GCTCTACTGATAGCTAAATCCTTGGTACTGCTGGACT 1949979 30 100.0 36 .............................. TATCCAGGGACACACGCCATCGTCCTGACAATCAGC 1950045 30 100.0 37 .............................. GGGCTCAACCCCACCCGGAAGTACGAGCAGGACGAGG 1950112 30 100.0 38 .............................. CGCATCGTCAACAGACGCGAAAATCTACGAACGAACGG 1950180 30 100.0 36 .............................. GTATAGCGCGTTTTCGTCGGCGATAAAGGAGGTCAC 1950246 30 100.0 35 .............................. TGTGGGTTCTGGTGTTTCAGGAAATTGGGAATCCA 1950311 30 100.0 37 .............................. CCGGTGAGGGCGAAAGACGGTCCTGCGTGGCCTGGAC 1950378 30 100.0 35 .............................. TCCAAGTCCGGGCGTCCGGTGGGCCGGATGATTCC 1950443 30 100.0 35 .............................. CAGAAGCAAGGAACGCGTTGCCGGCGGGAGAGGAA 1950508 30 100.0 37 .............................. TGATAATCTCCCCAAACAACACCCATTTTCTTACCAC 1950575 30 100.0 36 .............................. CCGTGAGGTACTACGAGCGCAGGGGCTTTCGCCCCG 1950641 30 100.0 37 .............................. ATGTTCAAGGCAGAGAAGTTGACCGAAGGCAAGCATA 1950708 30 100.0 36 .............................. AATATTTCATTACTGCCACCCTTTGCGACGGGGATA 1950774 30 100.0 38 .............................. ACAGTTTCTTGAAAACCATTAACAGGAGTACCATATAT 1950842 30 100.0 37 .............................. TCTGGTTCATCTTGTAATGGTAAATAGGAAATATTAG 1950909 30 100.0 35 .............................. TGAAAGGTGAGAATTGTGTGGGGAAAATTGTCACA 1950974 30 100.0 37 .............................. AAAAGGAAAATTTAAAAAACAAATTGAAGATTGGGCA 1951041 30 100.0 36 .............................. AATGGACTGGAAATTATCCTTGTCTTTGTTATGGTA 1951107 30 100.0 37 .............................. CTCCTTTCATCAGGCCAGTGCCCATCTCCAAGTAACC 1951174 30 100.0 38 .............................. CGGGGACGCAGAGCGGGGCGAACCTGCAGCTGAGCGCG 1951242 30 100.0 37 .............................. GGTCGTAGACCTCATTGTGTCGGATGCCCGTCTCGCC 1951309 30 100.0 37 .............................. CCACAGGCCGGACGTACCGGTTCAATCCAAAAAATCA 1951376 30 100.0 36 .............................. ATGAGTGTTTCATCTACAACAGCCCGCCACTGATTC 1951442 30 96.7 35 ..................G........... CAGCTCCCGCAAGTACTCGCCCATGCTTTGCCCCG 1951507 30 100.0 39 .............................. AGCACGCCTTTTCGGAGAATAAAATCGAGGTGGGAAATG 1951576 30 100.0 37 .............................. TCGACGGGCTCGTGCACGACGTGAAGCCCGCGACCCT 1951643 30 100.0 37 .............................. TCGTCCGAGAGACGGAACGAAAGGTGGTGACGGTACG 1951710 30 100.0 36 .............................. TGTGGCCAGCGGCACGATGTGCGGGCGGCGCATCTT 1951776 30 100.0 38 .............................. CGGCTGTGATGAGGATTCAGTACAACGATGGTTCCAGC 1951844 30 100.0 35 .............................. GGCTCACGAGCCAACAGGGCCAGTATTCCATCATG 1951909 30 100.0 38 .............................. CGTCGCCCCCGAAAAATCCTTCCTCCAGCCGCGATTTC 1951977 30 100.0 36 .............................. CAGAAGTTGTCCATTCTTCTTTACCGCGCTGATAGT 1952043 30 100.0 35 .............................. ATGCGGTTCTGCGCGCCGTACTGATCGTTCCCCTC 1952108 30 100.0 36 .............................. CTCAAGGTCCGTACTTTGTTGGCGGAACAGACGAAG 1952174 30 100.0 36 .............................. TAGAAGTACTCCGGAGCGCACAGGTCGTCCTCGATG 1952240 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 90 30 99.9 36 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGGGGCAGGCCAACGCGCGCCTGATCGCCGCCG # Right flank : CGTACGACTGAGTTTTTCCATGGTAGGCGTCATAAACCCTTCCTAAACTGGCTCCTCGCTAGAAGGAGTGGGTGGTTTATAAAAGGCTACCATTATGATATCCTTGGAACATTATGAAGGACATCGAACTGTTTCAAATAGCGCTTGGGATATCGTCGCCGTGGTTTGTCAAATCCCTGGAGTTGGACCCTGCAGCTAAGAGGCTTGATATCCACCTGGACTTTCAAAAGGGCTCTAAATTCACCTGTCCCGAATGCGGGGCAGAGGGTCGGAAAGTTCACGATACTGCGGAAAAGACCTGGAGACATCTCAATTTCTTTCAGTATGAGGCTTACCTTACGGCCAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1955025-1955660 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1955025 30 90.0 37 GCC........................... TCACGAGGAGGCGGGGCATTACACCGCCTCCTCCAAA 1955092 30 100.0 37 .............................. GAGGAGAGGGATAAGGTAATCGGGCAGAAGGTAAAGA 1955159 30 100.0 35 .............................. AATCGAGCCAATGAAAACATCACCGGAAAATCTTG 1955224 30 100.0 37 .............................. CCTCCTGTGCCGTTCGGTGTGTCATAGAACCCATCCA 1955291 30 100.0 37 .............................. TAGCGCGGCAGATTATGCCGCTATGGGAACGCTGTGC 1955358 30 100.0 37 .............................. ACGGGACGGTACCCAGCCCACGACCGCATCAGCTCCA 1955425 30 100.0 39 .............................. TGTTTCGCGGCGGGGGGTGGCGCCCGGACCGTCGGGGTC 1955494 30 100.0 37 .............................. CGATATCAAGAGCAAGACGGTCTGGCGCGGGGACCAG 1955561 30 100.0 37 .............................. ATGCGCTGCCAGTGGACACCGGGCAGCCCCACCCGCA 1955628 30 96.7 0 T............................. | AGA [1955643] ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 37 CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Left flank : GTGAACGATGCGGTGGACAGCGTCCGTCGCGAGGAGCGCAAGGAGGACCCGAGCCTGGCGCACACCCGTTATCTTTGGCTGAAGAACCCTCACAACCTGACGGAGAGGCAAAAAGAGCGGCTAGGGGAGCTGAGTCTGAGGAAGCACAATCGAAAGACCGCGCGAGCCTATCAGATGAAGCTGAGTTTCCAGGAGATTTTCAAGAGATTTCGCCATCGTGAAGAAGGGGAGCTGTTACTGAAGAAATGGTATTTCTGGGCTACGCACAGTCGTCTGAGTGCGATGATTGGCGCGGCTCGCACGATCAGGCATCATTGGGATGGAGTTCTTCAGTGGTTTGAGTCGCATATCAACAACGGCATTCTCGAGGGGATCAACAGCTCGATCCAGGCCTGTAAGGCGAGGGCCAGGGGCTACAGGAGCAAGGAGAACCTCATCTCAATGATTTACCTCATCGCAGGAAAACTACAGATAGGGCTACCCACTTAAAAAAGCGAGGA # Right flank : CAGCAGAATCCGCCGCGCTGGCGTACAAGCCCTGGCGCTTCTGAAACTTCCTTAGCTTAACACTGTTTTTGCAAACAGTCCCTGCAAGGTGCTATTTTTTTGCCCGCGGTTTGGGGGAGGGCGGCCGGCGGCGCCCGTCCGGCAAAAGTTAAGGAAACAAAAGTCGGAGCGGGGGGAGACAAAAGGACGAAAAAAGAGATACAATAAAAAATGCTGCAAAAAATTCGGGAGGGCACGCCGCGCGCCGGAGGTGGACGATGAAGAACGAGCTGGACTACATTCAAATCGAGGACGGGCTTGGGGGGAATCAGGACTGGTTCCCGGAGTGGGACATGTACCACGGCGGGTGTGCGGCGGTGACGGCGTGCGACCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCTAAACTTCCTTAGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 7 2094345-2091101 **** Predicted by CRISPRDetect 2.4 *** >NC_021038.1 Fretibacterium fastidiosum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2094344 36 100.0 35 .................................... CCGGGTGGTCAAACGGCACACCATCCCACTGGCAG 2094273 36 100.0 35 .................................... CATACTGACCGGCCTCCTCGTCCATTCGCGAAATG 2094202 36 100.0 33 .................................... TTACCCAGCTTTCCGGTTGGAAGAACTGGGTAT 2094133 36 100.0 34 .................................... GCTAAAATGGCTATGGAGTATCATCTTAATAGTA 2094063 36 100.0 35 .................................... GAATTCCATAGTAATTAATCGCCTGCAGGCAACTT 2093992 36 100.0 33 .................................... ACAATCAACCAGCTATATGATCCTTCCCCCGTT 2093923 36 100.0 33 .................................... AGTAGTGAAAGGCCTCTTGGGCCTGCTCGAGAG 2093854 36 100.0 34 .................................... ATCGCTAGATTCAGTTACTGCCTCCAACTGTTAC 2093784 36 100.0 33 .................................... AATTCCTCGACCTGATCTTTCGGGATTAGGCCC 2093715 36 100.0 32 .................................... GATCCACTGAACCACTCGATGAGTTTGATGAG 2093647 36 100.0 34 .................................... CTTTGACTGTGGCTCATAGTAGATCCTAAGAGCC 2093577 36 100.0 33 .................................... TCAACCCGTCCAGTAGCACTCGTATGATCAAAA 2093508 36 100.0 34 .................................... TAGCACGGTGAAGTTTCGTTTTCAATAAAGTAAA 2093438 36 100.0 33 .................................... AAGATGAAGACGCTGATGCCTCTTGAGTAAAAT 2093369 36 100.0 35 .................................... CTGCCTGTCCTGATAGGGACGATCTTCTTCAAAAA 2093298 36 100.0 34 .................................... TCTTCGTGGATTCTGAGGGAGAGCCGATCGAAAA 2093228 36 100.0 36 .................................... AGTAGGGTATCGCCAGCAAATTCCCAGACGATACCC 2093156 36 100.0 34 .................................... CTGTGACGCGGATAAAGGCGCCACGCCGGTTCAT 2093086 36 100.0 34 .................................... GGCTAGGTCCGAGATTAGTCCAGTAATACTCCCA 2093016 36 100.0 33 .................................... TCCCTATTCGGGCAGGCGCTCTTCACGAGCTGA 2092947 36 100.0 35 .................................... TCGGATGGGGCGTCATGTTAATGACGCTCATTGCT 2092876 36 100.0 34 .................................... CAGGAGGCCAAAAGCTTCGTACTTCCTGCATGGC 2092806 36 100.0 33 .................................... TGTTTATGGAAGTAAGAGCTCTTCCGTTAACAT 2092737 36 100.0 36 .................................... GTCACGTACCTCATTCAACTTGTAATTGACGAGGCC 2092665 36 100.0 31 .................................... CCATCAACTTCTTCACAAGAAGCGCGCCCAC 2092598 36 100.0 32 .................................... ACGGGCTTGAGCGTGACTTCATTGCCACGCCC 2092530 36 100.0 33 .................................... CTTGGTGCCGGTGTCGCCGGCACCGTGGTCCTT 2092461 36 100.0 33 .................................... TCCCGGGTTATTATTCATAACCCGGGCAGCCGC 2092392 36 100.0 34 .................................... ACCTCCGCCGGGACAAGGAGATCGGCCCCATACT 2092322 36 100.0 33 .................................... ACTGCCCCAGGGACTGGCAGTAGAGAATTTTGC 2092253 36 100.0 34 .................................... CCCCTCGGAATCCGAGGGGGAGGTTTCCTCCGTT 2092183 36 100.0 33 .................................... AGATAGTTGTTTCGGCCTATCTCCAGTAGGCGT 2092114 36 100.0 34 .................................... CCTTTTCAGAATCGTCACGTACCTCGTTCAACTT 2092044 36 100.0 33 .................................... AAACTATATCTTCTTGCACATCTCCATCAATCG 2091975 36 100.0 35 .................................... CCCGCTCTCCCTTTTTCTTAGGATAGTCATAAAAT 2091904 36 100.0 33 .................................... GCTATTCGCCAAGAGAGCGGCACCCGATGATGG 2091835 36 100.0 33 .................................... CTGTTGAAAACTAAACTTCATCATCCTCTTCAC 2091766 36 100.0 33 .................................... TCAGGAGAAAGTCTACCCCAAAAGATCTTCTCG 2091697 36 100.0 33 .................................... GAAGGTATACTTCTCTCTTCCTGTTGTACCTTT 2091628 36 100.0 33 .................................... ACCCCGACTGCTGGGTCATTACGATCTTCCTCC 2091559 36 100.0 34 .................................... CCAAGCTCTTTCCACGTAATCATTTCCTGATTCT 2091489 36 97.2 35 .....T.............................. AGGGAACATCACCGCAGCAATACCGTACTTATTGC 2091418 36 97.2 35 .....T.............................. AGGGAACATCACCGCAGCAATACCGTACTTATTGC 2091347 36 97.2 34 .....T.............................. ACGGTCTGGTCGGTCGCCTTCGCGCTGGTAATGT 2091277 36 97.2 35 .....T.............................. ATCTGGGCGCTTCCTACGATGTTTTGTAGGAAGAT 2091206 36 97.2 34 .....T.............................. GTCGATAGAGGAGTAAATCTTATTTCATTTAGAG 2091136 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 47 36 99.7 34 CTCAGCACGTCGGAAACCTCGGAAGGGGATTGAAAC # Left flank : TGCTGTCTCTCGTCCGTTTTTTTGACCTCGTCCATGTGGATTTGCCTCCGTTCCCGCTCAATGTCGATGGAGCGTAACAGTTCCTCCGAACGCTCCGCCGTGTTCTTGTTCTCGAGAGATCTCTTTCATCATCACGTTCCTTATTTTATCGTATAACACTCCGCTGTGCACCTGGCCCCCGATAAGACTCATGACTCGTGTGGTGTGATGGCGCAAAGTATGCCGGAGGAGATGAACGTCTTTGGCTTTGGAAACGGTGTTTTTCACCGGTCCCTTCTTTGGCGTTTGTTCTGCCATCCTTGGTGTGTTCGATACATGGGGTGCAGGGCTTTGTGCTGCACCCCGCAGAGGGGATGGGGTGAAAAAACGGCAGGGACAATGCGGCATGGCTTCTGAGTGGCATGAAAAAGCATCGAAAAAACGATTTTTTGAGAGGCCGGGGAGGGGGTGAAAAAAAGAGGGCTTAAAGAAGCTTGCTCAACGTATTTTTTCGTGATACA # Right flank : GCAACTAGTGCCGCAACCCTTTTTGTCCGTGTTCTCAGTGTCAGTGCGTCCAGTGACGCGCCCTGGGTGCGAGAGGGCTGGTTTGCTATAATGAGACCAGGAGCTGAAGGGATGGGGGGATGGTGCGGATGCTGGTCAACACGCCCTACGACGACGTGTTCCGAACGCTTCTGAACGATTGTTCGAGCCTCATTATTCCTATAGTAAACGAAATCTTTCACGAGTCGTACTCCGGGGACGAGGCGGTGGAGTTCTACTCGAACGAGCACTTTATCAACGGTCAGGATGGCAAAGAGCGTGAGCGCATCACGGACTCGTGCTTCGGGATACGGGGCAGGTCGCTGAAGAAGTACCACATCGAGTGCCAGAGCACGTCGGACGACACGATGTTGGTCCGGATGTTCGAGTACGACGCGCAGATCGCGCTGGATGCGGGCGAGGTCAACGATGGTGTGTTGACGGTGCGTTTCCCCGCGTCTGCGATCCTGTACCTTCGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGCACGTCGGAAACCTCGGAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA //