Array 1 822808-823202 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP059566.1 Neisseria sicca strain DSM 17713 chromosome, complete genome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ========================================== ==================
822808 36 100.0 34 .................................... AAAACCTCAAGCCACAGATTAGCAGCATTGAACA
822878 36 100.0 42 .................................... CAACCCATTCTGTTTTAAATAGTTTTACTCTTGGAATGTATC
822956 36 97.2 35 ...................G................ TCCAGCCAAATTTGCAGGAAGACAAAAGACTTTGC
823027 36 97.2 35 ...................G................ AGGATCCACACACGGGCATCAGGGACAGTATTGAG
823098 36 100.0 34 .................................... TATTTCTGATTTCAATATCCCACGCATCATCTAA
823168 35 88.9 0 ............A........G.......-...A.. |
========== ====== ====== ====== ==================================== ========================================== ==================
6 36 97.2 36 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC
# Left flank : AAACAAGGCACATGGCAGTTCCCCGAACCCAGCCGCTTCATAGACGAAATGCCGCAGGAAGACATCAAGATTTTAGGGCGCAAAGGCGGCGAGCCGATTGTGAGCAAGGAAGAGGGCAGAAGCCATCTGGCGGGGATGCTGGATATGTTGGCGGCGAAAGGGAAAGGCTGAAACGAGAGATGGACCAGCAAAAGGTCGTCTGAAATAGGTTGCACATGGTACTCTTCTTTAATTTGAAGTGTTCCGGATTCCTCCTGTCAGCCTGAAAGGACAACAAATCTGTGTCAGCCTCAATAATTCAAAAGCAGCGTTGTCGAATGTAAAATACATGGCTATAATCCGCATTACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGATTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACTGTATAGAAGATTGAAAATAATGAAATTTTTTGACCGAGTGCA
# Right flank : CTCAAACGGCCTTGATGATTCATCCCATCAAGGCCGTTTTTGCGTCATGCGTATTTTCAAGGTCTTAAAGAGGTCGTCTGAAAATGGCTTTAAGGGCATCTCAGGATATCGGTTTTCAGACGACCTTTTTCAACGATTTGAGGGTCGTCTGAAACGCCCGTCCTAGCAATAAGTAGCATATTCAAACTATTTCGTTTCGGGTATAGTATCGCCTGAACAGACTTTCAGGCAGGCTGACCGGTGCGGAAGCGACGTTTTATATGTTATCCCTAAAGATTCCCGCGCCGCCAATCGTCAGCCCGCCCTAAACCGTATGATGCGACATTGCTTTGGAGAAGCGCTGAAATGTTCAAACGTCCTGAAGAAATCATCGTCCTTGTCCTTGCCGTCATTTGGGTGGTGCTGACTTATTTCATCGCCGCCTTTCTCGGCGCCGATACTTACACCATCTTCCTGATTACCGGCCTGACGCTGGTATGGGCAGGCGTATGCTTCCGTCT
# Questionable array : NO Score: 3.12
# Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC
# Alternate repeat : GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [1.42,0 Confidence: HIGH]
# Array family : NA
//
Array 2 869647-870100 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP059566.1 Neisseria sicca strain DSM 17713 chromosome, complete genome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== =================================== ==================
869647 36 100.0 32 .................................... TCCATTGCCCAGTGATTGTGGTCGCCAACAGG
869715 36 97.2 34 ..T................................. CGCCAACGGTAAAACTCTATTTGAGTATTAGTTA
869785 36 91.7 32 ....A.....C.......G................. TGAGCCTCGTTGACTTTCCACAAGTCGCCGAT
869853 36 100.0 35 .................................... GAGATCGTAGTTCTTATTTTTGAGGTCTTTGAGCT
869924 36 94.4 34 .....G..............A............... ACCATTGTCTGCGCTCTTTTGAAGGTGTGTTGTA
869994 36 97.2 34 ...................T................ GGATCAACATCAGCCATAGTGACTGTTGCTTTAC
870064 36 86.1 0 ..T.........A.................C..AT. | A [870094]
========== ====== ====== ====== ==================================== =================================== ==================
7 36 95.2 34 GTCGGAAGACTTGCCCCACGTATCGGGGATTAAGAC
# Left flank : AACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCAAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTGATTGACCAAAGCCTCAACATGGGCAAAGTGCGCCGCGTCCTGATTTTGTCGCCCAAAATCCAGAATGATCACCAAAAAGACGAAAGTAAAAAACAAAAATGGACGGCATTCGAGCGCAACTGCGCCGCCAAAAATATCCAAATCATCATTGCCCACGATAAAGAAGCGCTGAAAGCCCTGACAAGCTGACATCGAAGTCTCTTGACCATGGAAACGTCGTCTGAAAATGTTAAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGTATCACAAGTTTTCCGACGGATAGCAAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGATTTTATTAAATAATGTTTTTGTTGGTTAAGGAAAAATGCTAAACTTTCTTAACTATATAAAATACTGAAAATAATGGAATTTTTTAACCGAGCGCA
# Right flank : CAAACAGCCTTGATGATTCGTTCCATCAAGGCTGTTTTTGCGTCGGGCGTGTGTTCAAGCGGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACGGTTTCCTTGCCCAAGTGCAGCCATTGCCCGATATACAGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAAGGCTGTTTTTGCGTCGGGCGTATGTTCAAGCGGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACCGTTTCTTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCGGGCGTAAGGCCGGTCAGCTCCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGGCGGTTGGAAAAACGGCGGTGTTCGTGCCATGAAAGCCGGGGCGGGACACCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTGGCATGATTGCCCCAA
# Questionable array : NO Score: 2.58
# Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGGAAGACTTGCCCCACGTATCGGGGATTAAGAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [1.42,0 Confidence: HIGH]
# Array family : NA
//
Array 3 1192992-1198425 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP059566.1 Neisseria sicca strain DSM 17713 chromosome, complete genome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ================================= ========================================= ==================
1192992 33 97.0 33 T................................ CAAACCACCCATCTTAGAATTACCCTGACCGGA
1193058 33 97.0 32 A................................ CGCCTGATATACACGCAACAGGATATTCAAGC
1193123 33 97.0 32 T................................ AGCCCAAGGAACGCCATTGAAAGAAGTCACTA
1193188 33 97.0 34 A................................ CATAAAGACACATTGGTAAAAATCGCCGGATGTC
1193255 33 100.0 34 ................................. GCCAGTAAGACGAACTGAAAATAATGTTTGCGGA
1193322 33 100.0 33 ................................. AAAATGGCTTGGTCTATGATTAAAGGCGTGAAA
1193388 33 97.0 35 T................................ GCTTCGGTTCGGCATTGTTTTGAACGTTGACAAAC
1193456 33 97.0 34 A................................ AGCCGGTTCAGACGACCTCTTGTTTGTGCGGACA
1193523 33 97.0 32 G................................ GTTTTAAGGAATCAGCATATAATCCCGACTTT
1193588 33 100.0 34 ................................. AAAAATGCCTGAAAACGTCGCCTTTTTGAACATA
1193655 33 100.0 34 ................................. CATAAAAGGTAGTCAGTCGAAAACCATAACCGCA
1193722 33 97.0 34 A................................ ACTTCGGCGGTCAACAAAATACCATCCTTTTCGA
1193789 33 97.0 33 A................................ ATCTGTGCCGCATCCATGCTCGCTGAAGAAGTT
1193855 33 97.0 34 T................................ CAAGTGAAAGAGCCTTACAACAAAAAGGCTACGA
1193922 33 100.0 33 ................................. CGAACATCACAAAATTTTCGGTCACGCACACGC
1193988 33 97.0 33 G................................ GGGTATTCCCGCGAGACCTAGCAAACCTATTAA
1194054 33 97.0 34 A................................ CAGACTGAAAGCCTTAAAAAAAAACAGTCGTACT
1194121 33 97.0 32 A................................ CATGTTTTCACGGAGGACTTGCCAAAGCTGGC
1194186 33 97.0 32 G................................ GCTATAAAAATCTTTTGCCACGTCGCAACGGG
1194251 33 97.0 33 T................................ AGTAGCCACCGATAGCCCTTCATACGAAACTAG
1194317 33 100.0 41 ................................. GCCGCCCTGATCCCTACGCTGGCGGTAACCACTTTGTGCGG
1194391 33 97.0 34 A................................ CGATATGTTAACGCGTTAACACGTTAAGTCAACA
1194458 33 97.0 33 A................................ AGACAATTCAGGGTATGCGGTCAGGTAATCGAA
1194524 33 100.0 33 ................................. CTACGGTTTGAGTTTTTTATGTCTGATGTTCAT
1194590 33 97.0 33 G................................ CGCCTCCCTCATCGGTACGGGAGGTGTCCCTTC
1194656 33 97.0 34 T................................ CGATGTTTTTCTGCAGGTATTGGAATTGGGAGGT
1194723 33 100.0 33 ................................. CATAACAAGGATACAACGCCTAACCGCTTGTCG
1194789 33 100.0 32 ................................. TGCTGCTGATTCTCTTGATTTTGATTTTGCTG
1194854 33 100.0 33 ................................. CTCGTCCAGACTTGAAACCAAATTCCACGCTCG
1194920 33 100.0 34 ................................. AAGAAAATTAAATTTGCATTGATTTATTTTCTTG
1194987 33 97.0 37 G................................ CTGGTTTGTTCACAGGATGCATTTCTTCGACCAACAA
1195057 33 97.0 34 A................................ AAGATGAGCGTCAGGATGACCTATTACAGAATCA
1195124 33 97.0 34 G................................ AATGAAAGACCTAGTAATAGATTTTGACAAGTTG
1195191 33 97.0 33 G................................ TGTAAAAGAAAAAATCATGTCAGATGGGAATGC
1195257 33 100.0 34 ................................. GATGCAACCCGTACTAAGACGCAACGTCAGCGCG
1195324 33 97.0 34 A................................ TTGGTATAAATGCGTGACGTCTCTGGACAATCCA
1195391 33 97.0 35 G................................ TTTCATCACTGCCTTTCTTAACACTACAAGATCCG
1195459 33 100.0 34 ................................. TGACCGACATCAACGGCAATCTCTTATGGTACGG
1195526 33 100.0 36 ................................. GACTGATATTTCATGGCGCATCCGCACCGCGCTGAA
1195595 33 97.0 34 T................................ CCTCGTGACAAGCTGTCCAACCGCACACCTCTCA
1195662 33 97.0 34 A................................ CACATAAACACCTTTTAAACGGTCTTTAGCAGCC
1195729 33 97.0 33 T................................ GTGGTCTTCGGAGCCAAAGCCACCAACCGCTCC
1195795 33 97.0 36 G................................ ACAAAGACGACCTTGCCGCGCAAAATACGCTACAAT
1195864 33 97.0 34 A................................ ACAACCCGACCCCAATCCTGACGGCAAGCCTGGC
1195931 33 97.0 32 T................................ AATACCTTCTGATTCGATGAAACGAGAACCTT
1195996 33 97.0 38 T................................ AGACTGGTAACAATCGGAACATTCAAACAAATTCCGAT
1196067 33 100.0 33 ................................. AGTTTATGGGAAAAAACTGTCTGATTCCGCTTG
1196133 33 97.0 33 A................................ CTTACGGATACCCCTTGACGCACGGACAAAGAA
1196199 33 97.0 36 A................................ CAGGGGAGGACAATTATGCGCGGGCAATGGTGTTGA
1196268 33 100.0 33 ................................. CGTTAAGGGAGCGTAAAACACATTTAGAACCCC
1196334 33 97.0 33 T................................ CTGAGAAAGCAATCAACCTAGAATTAAAACCGT
1196400 33 97.0 34 T................................ CTGAGCAACCGAAGCCACATCTATCAGAAGATGA
1196467 33 97.0 32 T................................ TGTTGATTTCGGTATTCTCGGTCGGTATCTGA
1196532 33 100.0 33 ................................. CATTTTCCCCGACTAGGATATTCTTATCCTTCA
1196598 33 97.0 34 G................................ GGCAATTGTATGGTTATCATCTTCAATCTCCGTT
1196665 33 100.0 34 ................................. ATTCTTGAAACTTGTTCAATTGCCTGAGCCGTAT
1196732 33 97.0 33 T................................ CCGAGCCGTCGGCGGCGAGACTGGGGGTGTGGG
1196798 33 97.0 33 G................................ TTTGGCTTTATCGTAAATACGGCAATAACAAGA
1196864 33 100.0 34 ................................. ATTGAAATGTTGAATAAGTGATGAAGCTCCTTTA
1196931 33 100.0 33 ................................. GCTGGCCACCTGCCGACATCAACGGTCAGCGTT
1196997 33 97.0 33 G................................ TTCGGCGGCGTGAAAAAACAACCTCAAGTCGTT
1197063 33 97.0 32 G................................ ATCGGATTGATACGGCCATGCAAGCGGCCAAA
1197128 33 100.0 33 ................................. ATGGCTTGGAAAGGCTACAACGTTTATCAAATC
1197194 33 97.0 33 T................................ AATAGCAATATTGCTTAAATAGCGGAGACCGAA
1197260 33 100.0 33 ................................. TAGTACGGCAAGGCGAGGCAACGCCGTACTGGT
1197326 33 97.0 33 T................................ CAGTTGTTCCCGTTCCAGTTGTTCCCGTTCCGG
1197392 33 97.0 31 T................................ ACCTCGATTTCACGTATCAAACGCGCCATTT
1197456 33 100.0 33 ................................. TGGGCATCAAGCCGTCGTCTGGCGTCGCACAAA
1197522 33 97.0 35 G................................ AATTGATGCCAATTTACCGCCACGTGTATATGAAT
1197590 33 100.0 33 ................................. TTTTATGGTAATTGATGTAATTTGATACGAAAT
1197656 33 97.0 37 G................................ GGCTGGGGAGAGGGTGGCTCTATGGGCGGCTGCACCA
1197726 33 97.0 33 G................................ CTCGGGGCGCGGGTTATCGACATCAACATGGGC
1197792 33 97.0 35 T................................ CCTGATATGAGCCAGCGGGAACAGGAAAATATCCT
1197860 33 97.0 34 G................................ TATGTCGTTGTTGCATTCGGCGACGCGGTAGAAA
1197927 33 97.0 34 T................................ GCCATCGGGCATCATATGATGATTGGTGAACTTA
1197994 33 100.0 34 ................................. CATCCATGAGGACACTTTTTCGCTTCTCGCCGGT
1198061 33 97.0 35 T................................ GAAGTTTGGGATGCAAAGAGTAGTCAATATGTTGA
1198129 33 100.0 33 ................................. CTTGATATCAATGTGGACATTATCAAGCTGCAA
1198195 33 97.0 34 G................................ GCCCACCCTAACCCAGTCAGCGGCAACCGCCTCA
1198262 33 97.0 32 A................................ CATAGGCGGTCTGCGGGGCTGTTTGTGGCTGT
1198327 33 97.0 33 T................................ ATACGCTTCGTTTTCGGTTTTTTGTTTCAAAGT
1198393 33 97.0 0 .........................A....... |
========== ====== ====== ====== ================================= ========================================= ==================
82 33 98.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Left flank : TGCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGTGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGATAGACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTAGGCAGCAAATGGCGACGTAAAGTAGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGAGAGTTTAGCGAAATCGGGGCTGCGAAGCCTGATGGAGCAAGGCTTTTGAGAGAGGC
# Right flank : CCTGAACGCGCTCAAAGAGCATAAGTCCATCTTCCCAGCCGCTTTCAGGCAGCTATATATCAGTACAACTCAGAGATTTCTTACGACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGTCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGACATCAGACAGATAGGTCAGCCGATTCGGGCATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCGCTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGGTCAGGGTGCATGCGGATGGATTCTGCCAGATATTGATAGCTGTCTGCGTCTTTGGCAATAAGTTTGCCCATGACCGGCAGCAGTTTGAAGGAATACAAATCGTATGCACCTTCCAGTGGCTTGTAGACTTTGGAAAATTCCAATACCAAGAGCGTTCCGCCCGGTTTGAGCACACGGTACATTTCTT
# Questionable array : NO Score: 5.56
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37
# Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-C [Matched known repeat from this family],
//