Array 1 644074-645085 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK736233.1 Enterobacter cloacae BWH 43 aedZM-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================ ================== 644074 28 100.0 32 ............................ AGGAAGGGGAATTGACCACGGTCAAAGAGGTA 644134 28 100.0 32 ............................ TTGACTTTAATCATTCTGCTTTCCGTGACGTC 644194 28 100.0 32 ............................ GCCAGCAGAATAAGGTTCAGACTCTAAATAAG 644254 28 100.0 32 ............................ CTGCCGGGGGCTGCTCTGGCGCCTGCGGCGCC 644314 28 100.0 32 ............................ AACAAGGTATTCCGCGGATGTTCTCAAGACAA 644374 28 100.0 33 ............................ TCTGCTGGCTGGCTAACAACCTGCATCATTGCC 644435 28 100.0 32 ............................ TCTTCATTTGGTCATAACCTCTTTTTTTAGTT 644495 28 100.0 32 ............................ TGGCCGCCGTCGCTAAGCAGCACGCTATCTCT 644555 28 100.0 32 ............................ GACCGGCTCCGTCGTGGACTGGGCGAAATGGT 644615 28 100.0 33 ............................ CTGAAGGTATGGGAGAAGAACGGTTATCGCCGC 644676 28 100.0 33 ............................ GGATTGGTCGGCACTTTCGGCGCAAACTGTGAT 644737 28 100.0 33 ............................ TGTCCAGCTCCAGTTCTCCCAGGATGGACTTGA 644798 28 100.0 32 ............................ CAGCGCGGTGCCGTACCACGTCAGCCGCAGCA 644858 28 100.0 32 ............................ GTACGAGACTGGTGGGCCTTCGCTGAGAAATT 644918 28 82.1 112 .....................AATC.C. CCTGGTTATGTCAAACACTGTGCCGCCTGATTATAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAAATAGCCAACATGGGGAAAGTAGGAACAGAGTCAATTAAGTTTT 645058 28 82.1 0 .....................AATC.C. | ========== ====== ====== ====== ============================ ================================================================================================================ ================== 16 28 97.8 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGGTTTGCACAAGCTTTTTGGCGGCGTGGGCTTTATTAGCGGCATGCTGGTGGAAAAAGGATTGCCGGGATTTATCGCCTACGGCGTGTTGGTTGGTGAAGTGGTTGCGCCGATCCTGATTATTATCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATTGTGGCGTGGCTGATGGTGGGAATGGGTGAAACGCTCGCCCTCGATAAGGTAGGTGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGTTTTGCGCTGGGGAAAGACCCGGCGTGGCGTTGAGGTTTGGGCTATGGCATGAAGGAAGGGGTCTACGGACCCTTTTTTATTGGTGATTTTTAACTCATTGATTTTATTGGGCTGAAATATATGCGAAGAAAAAGGGGTTGAGACGATTTTTTAGGTAATTTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : ACCTGGTTCTGTCAAACACTGCGCCCCCTGATTATAAACCCGGTGGCGCTGACGCTTACCGGGCCTACGAAGAGCCAACATGGGGAAAGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAACGGCGGCACCGCGTCAGATTATACGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCCGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACTACCTTCGTCTTACAGCAGCCGCACACGCCGGCGCGGCAGGCGGCCACGACAGGCACCTTGTTGCTTTCCAGCGCCTCCAGCAGCGTGGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGTAGCTTAGTGAACTGAATCCCGCTGGTTGCCGCCTCCGCCACGGGCGTGAAGAACAGCTCCTTGAAGAAGCGGGTCACGCCAAGCGCTTTCACTTCTTTCTCTACGCTGTCCATGTACGGC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 661936-663104 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK736233.1 Enterobacter cloacae BWH 43 aedZM-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 661936 28 100.0 33 ............................ CTGGGTTAAACTCCATGCCTCGCTTCTCTACGT 661997 28 100.0 32 ............................ TGAACTTCTTTACCGGCTATGATGCTGCCAGC 662057 28 100.0 32 ............................ GTAACCGGGATTAAAACGTCGCCGACCAGCTT 662117 28 100.0 32 ............................ CCAGGCTGATACTGCGTTACCAGTGCCGGACA 662177 28 100.0 32 ............................ GATACACCCAGGCATGGGGTTTCTATCGTGGT 662237 28 100.0 32 ............................ ACAACCATTTTTGATAATTCATTTTCTACCTC 662297 28 100.0 31 ............................ AAAAGCAAGCGGTGACGCGCAGAGCCAGGAG 662356 28 100.0 32 ............................ ATCACCGCAACAGCGAGAACGGCAAGTTAGCA 662416 28 100.0 32 ............................ TACTCGCTCAAGTTGTTTCGTTGATACGTGGT 662476 28 100.0 33 ............................ CCTGAACCAGTCAGCGCCGCTGTATGCCCCGAA 662537 28 100.0 33 ............................ AGTACAATACGGGGCCTGGCCAACACCGGCGAT 662598 28 100.0 32 ............................ CGCCGCTGGCGTTAATTGTAATTGTCATATTG 662658 28 100.0 32 ............................ CCCTCGTTTCTCTGCAATAACTTTGGCTATCC 662718 28 100.0 32 ............................ ATTCGAATCTCTGACTACAAGCGAAACATTGA 662778 28 100.0 31 ............................ TCGCACCACAACCCAATACGAGCCATAGCCT 662837 28 100.0 32 ............................ TGTCAAAACTCCAGTTTGAAACCAACGACAAG 662897 28 100.0 32 ............................ TGACCAGGCAGCTCGCCGCGCTGTCAGCTGAA 662957 28 92.9 32 ...T.............T.......... AATAACTGCTGCGCTCGATCGGCTGGTGGGTA 663017 28 100.0 32 ............................ ATCGAAACGAAACATCGACAACTGAGCGAAGT 663077 28 67.9 0 ...........C......T..CCCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCCCAAACGCATCCCGTATGCCGCTGTCTTGGAGCCTGGCTGGAAGAGGTGAAATCCGGGCTTACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGACGAAGTGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACCGAAACGAAATGCGACTACTGTCGGGCGTTAAACCATGTGCTGCTGGTGGCGAATTTTGACGGCGATATGTTGCCGCACATCACGGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGACGTTGTTGCCCCTCGAAATGCAGAACCGGTAATTCACATTATTTCCTGAGTTCGAGCCCAGGCGTCGGGGGCATTTCTCTGACGCCGTTGCTGTAACCCTTTTTTTTGATGTATACGTAACGTATTGATTTATATGATGAGGATTTACGTGCCAGAAAAAAGGGTTTTATACGTGTAAGTTGATTATTTTGTTTGCTAACAATAAGATGGCGTCGTTTCTTTCCA # Right flank : CAAACCAACCCACCGTATAATATTCACCAAACCAATTTAAAACCTAATCCCATCAAACCTGCACTCTCTATTTTCACAATAAATAAAAAACCCATTCATGCATGAATTATATTCTAACGAATATATTATTCGCAAAAATAATACTTCAGCTAAAAACATGATTTTCCACTTCATTATCACGGTGATTATTATTCATTTGATACCCGTCACATTTGTTTCCATCCGATGTTCGCTAACATATTGCGCATTCAACACCTTGAAATAAAAGCCCTTGCCATGTCCGTAAAGAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTATCTGGAGAAATGTCGTGTTCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGACAAGAGTCGTTTTACTGGAATATTCCCATCGCGAATACGACTGCGGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 672594-673337 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK736233.1 Enterobacter cloacae BWH 43 aedZM-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 672594 28 100.0 32 ............................ TCATCTTGTTTCGCTCGTTTACCAGGTCTACT 672654 28 100.0 32 ............................ GTGGGACAAGGTGACGCAGTCGGTACGCCATA 672714 28 100.0 32 ............................ ACTTTAGAGAGAATCTGGGTAAAGCCCGTCAT 672774 28 100.0 32 ............................ ATTGACCGTCTTTCTCGTTCAACGATGGACTT 672834 28 100.0 32 ............................ GAAAACGAAGCCGCCAGAGAGCTTACCATCAG 672894 28 100.0 32 ............................ TGATACAATCTTTCGGCAAATGTACCGATTAA 672954 28 100.0 32 ............................ GTCAGGGCATGGTGTGCAAACTAGCGGGGCGA 673014 28 100.0 32 ............................ TGCAATGCGACAGGGACCAGGAGAATATTCGG 673074 28 96.4 32 ...........A................ GCACGTTTGATGCCCGGACGCGACGCGCCCGC 673134 28 100.0 32 ............................ GACAGACGGGCGCGACTGCTTCGACTGATAGA 673194 28 92.9 30 ............G.........C..... AGGGAATGGTCACCATCACCACAGAAGAAA 673252 28 92.9 30 ..............CC............ ATAGAAAATAAGGTCTCTTCCCCTTACTTT C [673277] 673311 27 75.0 0 C.A.....T..A....A....C.-.... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTTTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCTACGTTACGTTCATTAATTCCGGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGGATATTGTCGAGCACGCTGACGGGTAACCCCTGATTGAGAAACTCAATCAGCCGCATACCCCTGTTTGCAGGTAAACCAGCGTACCGCCAAAGCGCGTTATCAGCAGGTTGTTGGGCGGGGATCCATGTTCTCATGTTACCTCCTGGTGAGTGTCATTTGTCATGGCTAAGTATAGTCATTTGTCAGGTGGAGTGGAATGGCGTTTTTTTATACTGGGTGGTTTAAGAGAAGATGGCGTTTGACCCTAATTTTTAGGGTGTTTGTAATGCATTGATATTAAATGGATATTTGAGAGGGTAAAAAAGAGGGTAAAAGAAGGGGTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGAAGATATTATTTCA # Right flank : ACGAACCGCCAAATAATTGTTCAAATAATCGACTGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCATTTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACGACAGGATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //