Array 1 52-324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCZ010000112.1 Klebsiella pneumoniae strain MRSN499958 MRSN499958_contig00112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. TTATTATATCTTCACGGTGAGGGAATGGTCCC 113 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 174 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 235 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGCCGAAATGGATACCGCCGCGATTGAGTATTCGG # Right flank : GTTGGTAATTACTGCTGTGTGTTACGGATAAAGTGTTCCCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226617-229787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCZ010000013.1 Klebsiella pneumoniae strain MRSN499958 MRSN499958_contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226617 29 100.0 32 ............................. CGATGCCGGATCCCGAGTTTATCCCCGCCGGT 226678 29 100.0 32 ............................. ATATTAAAGGTTTTAATGCGATCTACCTTTAC 226739 29 100.0 32 ............................. ACGGATCAGTAGTTACTGACGGATCGCCCCCA 226800 29 100.0 32 ............................. CTGTGCGAGTTCGGCATGACACCGGCCAGCCG 226861 29 100.0 32 ............................. GAGGGGGCCGAGGGAGCAGTGATCAGCAACGT 226922 29 100.0 32 ............................. CCAAACACAGATTTTCGTAACGTTATCCGGGT 226983 29 100.0 32 ............................. TTTTTTTTCGATCCCCTCCCCACCACTAAACG 227044 29 100.0 32 ............................. CGCCGTTATCCAGAGCAAATGACTGAGTAACC 227105 29 100.0 32 ............................. GCCAGAGCGGTGAAGCGCCAGCGCCGCGCCCG 227166 29 100.0 32 ............................. TCGCTCACCCTGAGCCGCCAGACCGGCACGTG 227227 29 100.0 32 ............................. GGCCCCAAAGGCGAAGAGGCACCGGCCTACGG 227288 29 100.0 32 ............................. CAATGGTGATGGACTATGACCGATAGCAGCGT 227349 29 100.0 32 ............................. CAATATATGGTGTGCTGACGGGCTGTAAAAAT 227410 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 227471 29 100.0 32 ............................. GTATTGATAACCTTTAGGATTTATAGAAATGG 227532 29 100.0 32 ............................. TGCTTCCAGCATTTCCGGTGCTGAGGCGATTA 227593 29 100.0 33 ............................. TGGTGCCGCTGAAATTAGCGCCGCTTACCAGGC 227655 29 100.0 32 ............................. CCCTGCGGTGCGCCAGTTCCCTTATTGGTGGC 227716 29 100.0 32 ............................. GCGCAACTTAAACTGTGGGTCTTCTCTGGACA 227777 29 100.0 32 ............................. ATCAACTGATTCGCTCAGCCTGGGAAGATGCA 227838 29 100.0 32 ............................. AATCTGGCACTCGCTTCCGGTGATATTCTCTA 227899 29 100.0 32 ............................. CAGAAAGTCACTTAGCATCGCCTTTCTCCTGT 227960 29 100.0 32 ............................. TCCTATCAGACCAGGATTAACCCGCCTTTCCT 228021 29 100.0 32 ............................. GAATTTCAGTCCAGAAATATTTATCCAGAGGA 228082 29 100.0 32 ............................. CTGGTGGAGCGCGCAGAACTGTATTCGACAAC 228143 29 100.0 32 ............................. GTGGCCTTTCATGACCGTTTCCGAGCATGGAC 228204 29 100.0 32 ............................. CACAGTCTGTTTTCCAGAATGTGCATGGTGCA 228265 29 100.0 32 ............................. TCATCCAGCAGGACAAAGCCAGAAAACTCTTC 228326 29 100.0 32 ............................. CAACTCCGCAGCGCCTGGGAGGGGTTTCGGAT 228387 29 100.0 32 ............................. CTGGTCCCTTTCTTGAATCCGCCGGATGCTGG 228448 29 100.0 0 ............................. - Deletion [228477] 228477 28 86.2 32 ...G.-G.G.................... TACACAAAAACGTTTTACAGTTGCGCAGCGCT C,A [228480,228488] 228539 29 100.0 32 ............................. TGCGCGGCAGAATCGTCGCCGTCCCGCCCGGT 228600 29 100.0 32 ............................. CAGGTCATGATGAAGACCTATCCGCTGGCCGA 228661 29 100.0 32 ............................. GGATTCACCTCGACCTGCTACGACGGACAGTA 228722 29 100.0 32 ............................. GCGACGGCGTGGATAGTCGGGATTTCACGCTA 228783 29 100.0 32 ............................. CCGGTTGACCGCACGGCGCCAGCGCGCCCCTT 228844 29 100.0 32 ............................. GCCGGCAATTTCTCGTTGAGGGCGCAGTTCAG 228905 29 100.0 32 ............................. TTGAACGATTCGGTTACCATCGCCTCCTGCGA 228966 29 100.0 32 ............................. ACACCCGAGATTTACCTGTCAGCCAGCGGCGG 229027 29 100.0 32 ............................. TAATGAATAGCAATTATCCATTTTTAGTAGGG 229088 29 100.0 32 ............................. GCTGCGTTGCCGTATTTACTCGCAGCGGTGGT 229149 29 100.0 32 ............................. CTGTCGGCCCGCCAGCGCTCAATAGGCGCTAC 229210 29 100.0 32 ............................. TGTTAGCTGAGTGTCGCCGGCACCGATATATT 229271 29 100.0 32 ............................. GGAAACCAGTTGCCGATATGCCCCGTAAACGC 229332 29 100.0 32 ............................. AACTCATGACGGGCAAGCGGGTCGCCACCGTT 229393 29 100.0 32 ............................. CGCTCTCTGGTATGTACTGCAACGTGCGATTC 229454 29 100.0 32 ............................. GTAAATAACGATTATGCACTAGAGGAGTTGTC 229515 29 100.0 32 ............................. TCATGCAGCAGATACAGAAAAAGGCTGGGCCG 229576 29 96.6 32 ............................A TATGCAGGCCGCAATTGCCTGTAGCTGCTGCC 229637 29 100.0 32 ............................. GGTGGAACCAATGTCGCCAAAGCAATCGGAGT 229698 29 100.0 32 ............................. AACTGTCCGACGTGGTCGCCGGTCGTGATATG 229759 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GGGATAATCTCAGAGTGTAAGTCATTGTCACAGTGTTCCCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYCZ010000014.1 Klebsiella pneumoniae strain MRSN499958 MRSN499958_contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 52 29 100.0 32 ............................. CTGATCCCCTCCAACAACACGCCAGGCACAGC 113 29 100.0 32 ............................. CGGTTAGCAATCCCGGGCACGCTATGGATACC 174 29 100.0 32 ............................. CGGGGATCAAAAGTTGCCACACCGTCAAAATG 235 29 100.0 32 ............................. GGGCTGAATGGCGAAAATATTGGCGATCTGTT 296 29 100.0 32 ............................. TCGACGGTAACCCGTGGAGCAAACTGGAGCCG 357 29 100.0 32 ............................. GAGGCACTGGGTGAATTATATGTTGAGATTGA 418 29 100.0 32 ............................. CAGGAAAAGGCGATACAAAAGGCAGTGAGCGA 479 29 100.0 30 ............................. TGCGGCATCGCTCTTCATGACTGGCGATAT 538 29 96.6 32 .....T....................... AGCTACTGGCCGCCAGCCACTGGATGACGTTG G [542] 600 29 100.0 32 ............................. CCGTGAGCCGTGCTCCTCGGTCGCCATCCCCA 661 29 100.0 34 ............................. CGAACCAATAAGCGCCCCTTGCCGAGTGACTCCC 724 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 785 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 843 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================== ================== 14 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGTGCTAACCGGCACGTTTACCCGGACGAACACCG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGACCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //