Array 1 1729-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMG01000281.1 Escherichia coli strain WCHEC1613 NODE_281_length_2936_cov_39.6355_ID_47589, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1728 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1667 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1606 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 1545 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 1484 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 1423 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1362 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1301 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 1240 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1179 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1118 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1057 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [1031] Deletion [1017] 1015 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 954 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 893 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 832 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 771 29 96.6 32 .........A................... TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 710 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 649 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 588 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 527 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 466 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 405 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 343 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 282 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 221 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60150-59206 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMG01000008.1 Escherichia coli strain WCHEC1613 NODE_8_length_82313_cov_55.1188_ID_47043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60149 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 60088 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60027 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 59966 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 59905 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 59844 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 59783 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 59722 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 59661 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59600 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59539 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59478 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 59417 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 59356 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59295 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59234 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //