Array 1 13309-11571 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGTY01000018.1 Halorubrum sp. CGM5_25_10-8B NODE_18_length_56936_cov_26.548223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13308 30 100.0 36 .............................. TCCGGATCGAACTGGTTGCTCGGATCTTCGAGCAGG 13242 30 100.0 37 .............................. TCCCGGTCGGAGAGACTGGTATGATCCTCCCCGAACA 13175 30 100.0 36 .............................. GTCTACACGACCACCACGGACTCGACCGAATCGCTG 13109 30 100.0 34 .............................. GACCTCTTGAACCTCGGTCCAGTCCCCCCACGAG 13045 30 100.0 36 .............................. TCCCACAGCGTCGACGGCGCGTACTCCGTCTCGCGC 12979 30 100.0 34 .............................. ACGTAGTAGCACTCGTAGGCGGCATCGTCGACCG 12915 30 100.0 37 .............................. GACGAGGAGGTCGCCGGCCCGGCGAGTGAGACGATCG 12848 30 100.0 36 .............................. AGACACTCGCCTTGATAATGCTTTAAATAGCCTTAA 12782 30 100.0 37 .............................. TGATATATCCTCCGCCAAACTTTGCTCCGGCACAAAG 12715 30 100.0 37 .............................. TCCGTGCTGATGCGCATCCCGCTGTAGCCCTGACCAC 12648 30 100.0 35 .............................. ACCGAGGCCTCCGGCGAGGAATCGCTGGAAGCCGG 12583 30 100.0 34 .............................. ATCTTGGTCGTCAATTAGGCCAAAGATAAGGTCA 12519 30 100.0 36 .............................. GTGAAGTTGACGTACTCGTTGTAGTGGCGACGGTTA 12453 30 100.0 36 .............................. TATCTCATCTCATGGCTCCCGGGCCGCACGACGGGG 12387 30 100.0 35 .............................. CGCTACGCCTACCTCACGAAAGGCGACGGCGGCGA 12322 30 100.0 36 .............................. TGATCGTAAAACGAGTCGGGGATGCCGTCGCTCATC 12256 30 100.0 36 .............................. AACTTTGAGGCGGTCCAGAACGCGCGCGCCACGCTC 12190 30 100.0 36 .............................. ACCGTATCCTGTACCCCGCTCACCGCGTCGTCGACG 12124 30 100.0 35 .............................. GGTGACGATCACCTCGTCACGCATCCTCGCAACAC 12059 30 100.0 36 .............................. GACGTGATCGGCGTCGACGTCGTCGCTCACGACGCA 11993 30 100.0 36 .............................. GACGTGATCGGCGTCGACGTCGTCGCTCACGACGCA 11927 30 100.0 33 .............................. TTCATGGGAATTGTCCGCCTCGTGAGGGAAAGC 11864 30 100.0 37 .............................. GCGTCCGGCGCCGCACGCCGGAGCTCCCAGATGAAGT 11797 30 100.0 36 .............................. ACAACTCGGCCCCCTCGATCTCCGGCGTCAGCTCGC 11731 30 100.0 36 .............................. ACCGGATACTCGGTGTGATCCCGAAGGTTATCAGCC 11665 30 100.0 35 .............................. GTGACGCGCTCGAAAGGCCCGCAGCCGTGGGGGTG 11600 30 90.0 0 .................AG..C........ | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.6 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Left flank : CGCTGGCTCTTCAAGTGGTTCTTGAGCCGCGTTCCCGACTCGGGGCGGCTCACCATGTACAGGTGCGGGCCGATCTCGTCCGGAAGGTTCTCCGGCTCCTCGCCGATCTCCCGCAGCCGCTCCTCGTCGAGATCGCCGTCGAGCGAGAGGTCGCGGAGGTCGATCGCTCGGAGGTCGCTGTACCGGAACGCGAAGCGCCACATCAGGAGCATGACGACGTGGTCGCGGCTCGCGTACTCGAAGCGCTCCAGATGCGCGAGAATCTCCCGAGCCCGGTCCGGCGCGATCTTCTCGGTGTTGGTCTGCTCGTCGGCCGTCGCCGCCGGCTTGAGCAGTTGGACCTTGTCCGGCATCTCCGGCTCGGTCGCTTCGATCGCGACCAGGAACTCGAAGAACTTCTTGAGCGTCCCGAACTCGTTGTTCAGCGTCGTCTTGTTACACGACTCCTGCCGATGCGCGAGGTACTCCTGTAGCGTCCGGCCGTCGCGGCCTTTATCGTT # Right flank : GTCGAACTCTTCTGTGAATTCAGATTTTACTTTCTCAAACTCTGACTGAAGGACTTCTATTCTTCGTGCTTTCGTTCGTAACTCAGTAGCGTGGTTCTCGATGAGATCACGGAAGTACCGATCATCCTTGAGCTGAGAAGGAACGGCGGTGAATGCTTCTCCCGAATCAGTAAGAGAGAGGCTGGGATCCGCAGATTTGAACGATGCTCGACCAACCGAGGGGAGGTTATCGGATGGTGCGTCCAACGGATCCTCTTCAGTCAATTCCATTTCAATATTCCCGTGCCACTCTTGAACCCTCTCCCGAAGTATCTCTGTGTGCTTCTCCCGAACTCCACGGTTTAACTCCGCAGTGAGAAGCTCCTGCTGGGACTCTAAAACTTTGGACTGTCGAAAATAGAGAGTCGCCAGTATGGCCGTTAGAGCGACCGAACCTGTCGCATTGAGGGCCGGAAACCATTCTACCCCGTAGACCCGTTGGACGCCTGTTGCCGCAATCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 216478-212241 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGTY01000005.1 Halorubrum sp. CGM5_25_10-8B NODE_5_length_237402_cov_40.319882, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 216477 30 100.0 36 .............................. CTCCGGCGTGTGGTCCGACTACTTGCCGGAGGAGGA 216411 30 100.0 35 .............................. ACCCCGAACATCGACGAGCGCGACTTAGGCCGCGA 216346 30 100.0 36 .............................. GGGCCGTAGCCGGACGCACGCTTAAGGTTGCGGCGG 216280 30 100.0 35 .............................. GTCGAACTCCGCGCCCCATTGGCGCTTGTGTCGAA 216215 30 100.0 36 .............................. CACGAGGACGGCAGCACCGAGTCTATCCCGACCACG 216149 30 100.0 34 .............................. TGAAGGGGATGTTCGGGATGAGATTAAGCGCCTC 216085 30 100.0 33 .............................. CGGGCGGCGTCCTCGTCGGTCATGAGCGGTTCG 216022 30 100.0 35 .............................. GGTTTGCCCGTCCGTCGTGATCACGCCGCGCGATA 215957 30 100.0 36 .............................. GTCTGTTTGGACCCGACCATCCACACGTCCATATCA 215891 30 100.0 36 .............................. TGGACGTTACCGATCGCGTCGTCGACGCCGTCCGGA 215825 30 100.0 49 .............................. GCTCGTCCCGCTCGCAACTGTCTCCGTCTCGGTGCTGCCGACTCGGAGC 215746 30 100.0 35 .............................. CCCGGCGGCGTCGACCTCATGGAAGTGTCGATCGT 215681 30 100.0 35 .............................. GAGCCGCAAACCGACGAGACGGTCGAACTCGGCGA 215616 30 100.0 36 .............................. GAGCGACTCTTTGATCGAGTCGACATGGTAGCCGTA 215550 30 100.0 35 .............................. CGCGGACAGCATGAACTCCTCTACGTGGCGACCCG 215485 30 100.0 37 .............................. CTGACGGACGCGCCCGACGAGCCGATCGACGCGACGG 215418 30 100.0 35 .............................. CGGTTTGGCAAGGGCCGCGAGGAGACGAGCGGATG 215353 30 100.0 36 .............................. GCGGCGCGCAACGGGGCGGGCATCGTTGAGATACTG 215287 30 100.0 35 .............................. CACGTCAACGACGGTCCGGGTGGTGGCCTTACGTA 215222 30 100.0 36 .............................. GTGAGTCGGTACTCCACCACGTCCCACGTCTCGCCG 215156 30 100.0 36 .............................. CACCGGAGGTGGTCGGCGTGGTGGAGCGTGAACCGT 215090 30 100.0 36 .............................. CCGATGAACCAAAGGCGTCTATTTCGCTTGCGGGGC 215024 30 100.0 35 .............................. GGTCAGTACAGATAACCTCAATGGCGGGTATCCGT 214959 30 100.0 35 .............................. GATTAATCTGGAACCGACACAAGGCACGGTGCCGG 214894 30 100.0 36 .............................. GAGGGGCGAACACGACGCGCGCGAAGTTGACGAGGA 214828 30 100.0 35 .............................. CTCCTCGGTCAGTCCGTCGTCGTCGGTGTCGGTGT 214763 30 100.0 34 .............................. GCGCGGCACGCAGCCAGCGTCGCGTCCGGGGCCA 214699 30 100.0 35 .............................. GCGTGACGTGGGGCGAATAGGCGAACCGGAGGTTT 214634 30 100.0 36 .............................. ACTTCGCCGCCGCCGACGCCGTCCGCCACGACACCC 214568 30 100.0 34 .............................. ACGCTCCAAGAACTGAATACCGACGAGTACGCGG 214504 30 100.0 34 .............................. CACGAGTCCGCCGTCTCACTGCGGGAGGTGGACA 214440 30 100.0 36 .............................. ACGAACTCGTCATTAATGCCGCGGAGGTACGCGATT 214374 30 100.0 36 .............................. GACGTTATCGCTGCGGCCGCGAAGGGGCTCCTCCAG 214308 30 100.0 37 .............................. GCGGTCACGTCCCGCGCCGGCACGCGGGCGCTGGAGG 214241 30 100.0 35 .............................. CCCTCGGGGGCGCCGCCCGAGTCACCCACGTCGCC 214176 30 100.0 35 .............................. GTAGGTAATTACGTCCGCCTCGGGCTTCGGCTCGG 214111 30 100.0 36 .............................. CATCGGGCGTTACGCCGTCCGCGTCGTTGTGGCACC 214045 30 100.0 35 .............................. GCCTCCGACCATGGCCGCGCGGTCCATATAATAAC 213980 30 100.0 35 .............................. CCTGACCACTCCGCGAACGCGACCCGCCCGCGCGT 213915 30 100.0 36 .............................. AAAATCTGGGAGTTCTAACCCCGTCAACCCCTCCGC 213849 30 100.0 35 .............................. TTGCGCGGGCGGCACCCACCCACCCCACCACTCAT 213784 30 100.0 37 .............................. GCGACCTCCGACGCGAGCCGGTCGATGATCGTTTGGA 213717 30 100.0 36 .............................. AGTCGCACGATATGGGCGTCGCCGACGTGACGCCGC 213651 30 100.0 35 .............................. GGTCGTTCGCGTCCGTCACCGACGAGCCGGCGCTG 213586 30 100.0 36 .............................. CGCACGTCGGTCCCGTTAATCCCGAACAGGTCAATC 213520 30 100.0 37 .............................. GCACGACACGCGGTAAGCGTTGCGTCCGGCTCAACGT 213453 30 100.0 35 .............................. GGTCGCGCCGGGGAGGAGTACGTCCACGTCGACGC 213388 30 100.0 35 .............................. AACTTTGAGGCGGTCCAGAACGCGCGCGCCACGCT 213323 30 100.0 35 .............................. GCGCGGATGAACGCCACGGCGGGCGGACAACACTC 213258 30 100.0 36 .............................. CCGCGAATGGTGTGCGGCGACGTGCCGAACTCGAAG 213192 30 100.0 37 .............................. ATCATGCCTTCAACAAGCGCCGAGAGCTTCGCTTGTG 213125 30 100.0 35 .............................. GACGTAGTCTACTACAGTATCATCGTCAAACGTGT 213060 30 100.0 36 .............................. AACTGTAGCTGTTCGACCGCCGGAACAGGGTGTGTA 212994 30 100.0 35 .............................. GGCTTTGCTCCTAGACGAGATAGGAGCGGGAGCGG 212929 30 100.0 36 .............................. GATTCGTGACAGCTGTCACCGTAGTCGCACCGACGG 212863 30 100.0 36 .............................. CGCTGCCCGTTCGACGCCGCTCGGGCAACCGTCTCC 212797 30 100.0 35 .............................. AACCCGCACCACACGATCCCCGACGACGTGGCAGG 212732 30 100.0 36 .............................. GACAACGGCGCCGGGATGCTGCCGACCGAGTAACCG 212666 30 100.0 36 .............................. TACGACCAAGACGTCGAGACCTCGGTCGGCAACGAA 212600 30 100.0 36 .............................. AGCGGCGACACGATCGACCTCCGCAACGTCGACGCG 212534 30 100.0 37 .............................. GAGCAGCTGGGCGTAGCCAGCGAACGCCCCCGACCGC 212467 30 96.7 37 ..............T............... GGAATATCAGCTGTAATCCCGACTAGTTTCTCGGATA 212400 30 96.7 34 ............T................. GAACACCTCCGTGCCGCCGTCGGCCGTGGCGATG 212336 30 90.0 36 ..C...A..........C............ GATCGCAGAGCCGAGCTCGGGATCGAGCTGATCAGC 212270 30 93.3 0 ..............T..........A.... | ========== ====== ====== ====== ============================== ================================================= ================== 65 30 99.6 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : CTTGAACGAACGGTTGAACACCCTGATCTGAACCGCAAGGTTAGCTATCAGTACCTGATGAGGCTCGAAGCGTATAAACTTAAGAAACACTTGCTCACCGGTGAGGAATACGAGCCGTTCCAGCGGTGGTGGTGAGATGTACGTCGTGATGGTCTACGATCTTGAGGCCGAGCGGACACAGAAAGCACTCAAAATTGGGCGGCGGTATCTGACTCATGTCCAAAACTCCGTGCTCGAAGGCGAGATCTCTGAAGGTGATCTCACCAAGCTCAAAAATGAGATCGATGACCTGCTGAAACCCGGGGAGTCGACAATCATCTACGAACTATCTTCTGATACACTGCTCAATCGGACGGTCTACGGTGACGACCCAACTGAAGATCAGCGATTTCTGTAATCGACTCCGTCAACCCCATGGGGGACACTGCCTATTGACGGTTGACGGAAGGACTTTATTGTAACCAGGCGTTAGAATGCCTATGCTCCGTATATCGGGCATG # Right flank : GAGCAAGACGTCGAGTTCTTCTCCATGTTAGATCCGGTCTCAGAAGAGCCCTACATGTCGAGATAGGGGCCGTAAGCCCGAAACGTGGGACGGTAGCTGATTATCATAAACATTGAATTTCAGTACCAGATTTAAATGCTTAGCAGATAGCAATTTTGTATGGCTGGAGTTCAAGCAATCTTGCTTGCTATCTGCTTCCCAGTTCTTGCGATAGGACTCCACGAACTGACCCACCTAGCAGTCGCCCGGATTGCCTGCCCGCTTTCGATTGAACAGACCTCGTGGGTCCCGTTCCGACTTCGCCTTGATTTTGAGAGACTGCCGGCAAAAGCCACACTCCGGATGATTGCACTTGCTCCTCTATTTGTCGGCGGCGTGGCTGCTGCCATCGCTCTTCAAGCTGGAATTTGGCAACAGATTAAAATCGCTGATCCGTACTATCTCCATCACCTTATGATAGTGTACTGGTTCCTCTATATTATTCCCAGCCCTGCAGATAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //