Array 1 94493-94765 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUM01000020.1 Escherichia coli strain STEC 3098 STEC3098_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94493 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 94554 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 94615 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 94676 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 94737 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120467-122753 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUM01000020.1 Escherichia coli strain STEC 3098 STEC3098_contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120467 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 120528 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 120589 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 120650 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 120711 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 120772 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 120833 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 120894 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 120955 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 121016 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 121077 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 121139 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 121200 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 121261 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 121322 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 121383 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 121444 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 121505 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 121566 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 121627 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 121688 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 121749 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 121810 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 121871 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 121932 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 121993 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 122054 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 122115 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 122176 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 122237 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 122298 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 122359 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 122420 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 122481 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 122542 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 122603 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 122664 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 122725 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACTTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //