Array 1 69543-69270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000002.1 Gilliamella sp. W8126 NODE_2_length_686626_cov_326.876157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69542 29 100.0 32 ............................. TTCTTTTCTTTTTTTATTGTATTCTAATTCTT 69481 29 100.0 32 ............................. TACCTTTGTTTTTTTGTTTAATTTCGACCATT 69420 29 100.0 32 ............................. CGTCTTGCTAGTTCGGTTTGAGTGAGTTTTGC 69359 29 100.0 32 ............................. CCCAATTAGGGCTTTTGGTGCCTCGGTTGGAT 69298 29 86.2 0 ............C.T............AA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : AAGCTCACAAGCTAAAAGTATCACATTAAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCTACCCGTTTATCAAAGGATAATGTTGATCTTTATTTAGCATATCAACATGAAGATAAAATTCTGCCTTACTCAAGTAGTAGTGAGTATGCTTGGGAACAAAGTCATCTTACAATTAGTGCATCTAAATGGGCTAGGGTTAAAAATGACATTCCACAACTTGATCAACAACATCTAGAAAAATTAAGACAACAAATACATAGATCTAATGCAATAATTGTTTTAATTAAGTTAGAAAAAGAATCTTCCTTTTATACTAAAGAATTAGGTTTTTATCTTAATTAATTTAATCCACATTTAAAAAGTAATAATTCTATCTTCTAATAAATTGATTAAAATTTAAACAAATAAAATCGGTAAAAAATGACGTCTGTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : AGAGTTAGCAATTAGTTAGAATCAAATATTAATTAGCTTTGATTAACCAAAGCCAAAATATTTTGGATGGCTGTTTTAGCTTGATGGCTATTTTTCCAACATGATGATCCTGTTAGTAAAGCACCTTTGTTAAGAATTTCATCTAACGAGGCATTGCGTAATTTATCAAAAGAATCAAGTTGCATCTCTTCAAGTCTTTCAATAATTTTAGTGCCAACAAATTTTAATTCTAATAATTGTTGGCGTTCGGTTTCTGAAAAGGCCATTTTTTCTGTCCATTTTAAAAAATTGTTATGATGTTACTAATGCGAATTTAGTTTTTTCCATTTCCTGATTTTAGTTCTAAAGGATTTAAATGGTGCAACTGAATTAATGTGGATAAATCGTGCCACAGGCCACGCTGAAGGATAAGGCTTAGTCCAATTGCGAGCATCTTTAGTAAAAAGCGTATTATCATCTAATGACTCAATCCAGCTATTCCAAGTAGCTAGTTTCTGTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 353285-353732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000002.1 Gilliamella sp. W8126 NODE_2_length_686626_cov_326.876157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 353285 28 100.0 32 ............................ GAATCGTGTAATTTTGAGTTATCAGGGCGATG 353345 28 100.0 32 ............................ TGACCGTATGACGTTGATGTTAAATCGTAGTC 353405 28 100.0 32 ............................ TCGCCATTAGCATCGATTATCGTTGGCTCGAC 353465 28 100.0 32 ............................ AAAAGCTTGACCAACAATTGGAGCAATAACAC 353525 28 100.0 32 ............................ TAGAATGAACCGAACCCAACGGCCATGCTTGG 353585 28 100.0 32 ............................ AATGCTGAAAGACATCCCGTTGCTTGAGAGAA 353645 28 100.0 32 ............................ CAACATTTAAGAGCGATTCATGTTGATAGTTA 353705 28 89.3 0 .........................TGC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCAACGCCGTATAGGTGGTTTAGAAA # Left flank : AGTACTCAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGCGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATTGGCGCAAGATTAGGTGCAAAAATGGTTATAGCTAAAGGACGAAAATTAATAAGACCAATGTTAATTACCGTTTCAACCATTATGAGTTTCAAATTAATCTATGAAAACTTCTTTTAATCATCGCTAATAAAATTTAGAATCAGTTTTAGTACAATCAATAAGCTAACAACCAAGAATACATTAGCCAATTAAAAACCCCGTTCCTCAAAATTTTGAGGAACGGGGTTTTTGCATTTCCCAAAGTCTATATTTTAAATCAATAATAAACCCTTTTTTTTACATCAAAATTAATCTGATAAAAATCAGATAGTTGAAATTAACCGCAAAAAAAGGGTTTTTAATATCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : CTATTGCTAAATAAGCTAAAAAACTGAACTCATATGTTCAGTTTTTTTGTATACTAACTTTTTGTATTCACTCGATAAGAGAAAATATAGGCTATAACAGCAATAATGCCAAATACAAGAGATAGAAAAAACATTGTCTGATAGGCGCAATTTACTGAAATTATTTGATCTAGAGTTAGGTTGATTAATATTCCTGATAATACGCTTCCAAATGCACCTCCAATTTGCTGTATCACACGAGTGATAGCACTTGTATCCTTAATCTGATTTTTTTCACAAAACTCAAATGGAGAAGAGAGAACAGCAATCGTAGCAACACCTAATCCGGAGCCTCGAACAGTAAAACCGATGATTTCAGAGGCATTTCCACCTACTTGAATTATTAATATACTTATTGCTGATATTATTAGACCTATACCAATAATTAGAAATGAATTTATCTCACTTAAAGATTTATAAATAAATTTTCTCGCCAACCAAGCTCCTACACCTTGTAAGGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 365987-366193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000002.1 Gilliamella sp. W8126 NODE_2_length_686626_cov_326.876157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 365987 27 100.0 33 ........................... TGAACTAATAAAAGCGGCTCAAGCGCTTTATTC 366047 27 100.0 33 ........................... TGATACAAAGTCATACAGATCACTAGTTTTTCC 366107 27 100.0 33 ........................... AGTTGTTAGGAAAATTTAATAAACATAGAGAGT 366167 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 100.0 33 TTCAAGGCTGCATAAGCCGTTTAGAAA # Left flank : CCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCGTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACTGGGCAACACTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTGAAGGAACATTTAATAGTTACGGACTCAGCAAAACAGCAACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTGCCAATAATTAACAATATTAACGGCACAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGTTTTTAAAACCTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAAATTTTTAAAAATCAATTAATTGAAAAGCCTCCAAAAAAAAGGTTTTTGCAAAGTAAAATAGACTTTGCCTTTTGCACAACAATGTTTATAGTATTTGGGGTTCTAC # Right flank : AATGTAAATAACTTTATCTTAACCAGCTATAACATCAGCTAGGGCCAATAATAAAAGTTTTTTATCAATCAGTTTAGTGCTTCTCATTTAGCGACTTTAGCAATGTGCTGACAACTGAGTGAGATTAGCATGACAAACAGGGATGTTTGACAAGGCTGCTCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCAATTACATCGTAACCACTTGCGAGGTTGCCGCGGGAGTTGGTAAAGATGATTCGCGTAAACCCACTTTACTCGGACGTTATCGCCGTAAAGAACTAGCTACCAAACAACAAAACGTCCGAAACTCACCGAATAAAAAAATTTGAGGAGCGGGGTTTTTTAAGAGTAAAATCCATCCGATAAATCACTAAAACCAGCGATAACATCAGCTAGGGCCAATAATAAAAGTTTATTTTTATCAATCAGTTTAGTGCTTCTCATTTAGCGACATTAGCAAAGTGCTGACAACGGAGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 34720-35166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34720 28 100.0 32 ............................ GCCTAGCCACTGGATAGCTTCATCGAATTTAG 34780 28 100.0 32 ............................ AGATCATGTTTGTCTAGACGCTCCGAAAAACG 34840 28 100.0 32 ............................ CAATAGGTTCACGAAACGATAGGCTAACAGCA 34900 28 100.0 32 ............................ TGTTGGCGTTGGTCCTCGCCCACCTCTTCATT 34960 28 100.0 32 ............................ CGGCGTCGTAACCGACGAACAAAATACAGCAC 35020 28 100.0 32 ............................ GTAAAACTATGATCGGGGTTTTGCGTCGGTTT 35080 28 100.0 32 ............................ GCGGAGATTTAGAGCCGATTTTTGAAGATGAA 35140 27 92.9 0 ....................A...-... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AATCAGCTAGTGACAATAATAAAAGTTTATTTTTATCAATCAGTTCGGTAAATTTTATCTAGCGACATGAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGACAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATACAGCCGATGCGTTAATAGCGAACGATGGCGGAAGGCCGTCACATAGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGTAAACCCTCTTTGCTCGGACGTAATCGCCGTATAGGAATAGCCACAAAAGCGCAAAACGTCCGAAACTCAAAGAATAAAAAAATTTGAGGAACGGGGTTTTTTGAGCTTAAAATCCATCCCATCACTAACCCTTTTTTTTGACTTAAGATAAAATATTTAAAAATCAATAGGTTGAAAAATGGCTCAAAAAAAGGGTTTTGACTGGTAAAAATAGACTTTGCCTTTTTGCCAATAACATTTATAGTATATGGGATTCTA # Right flank : ATTAGTTAAAGTTATAACGCTCGAAATCCACCAAACTAGAAACGTTTAGCAAAGGAGTTTTTTAAGGTGAATAAACTTATCACATGCTATAATTGTTTTCACTCATAATTAAACTTTACACCTATTGTGAATAATAATTCAATTGACAACAAACTAAATGAAAAAATGGTGCTTATTTTCAAAGCACTCTCTGATCCAGTTAGAATTGAAATAATTAAATACTTAAAAAACATAAGAACTGAGGTCATTTGTGGTGAAATAGGCCAAGCGGTTGGTATCAGTAAACCTTCGGGAACTTATCATTTTAGGTTATTACAACAAGCTGAATTAATTAATGTAAGAAAAAGTGCTAGAGAAAAATATATAGGACTGAATAAATCAACATTTGATAAATATATTACAGGCTTTTTTGATAGTCTTTAATATATTTAAATGTTGATTTAATCTTGAGTTTACTACTGGATGTTTATTAACTATTATAATTTGCGCCTTGTCGTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 390302-390629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 390302 28 100.0 32 ............................ GTGAATTAAATCATTTGCTGATTCGATCGCCT 390362 28 100.0 32 ............................ TATTTCCTGTAATCGAACAAATTTACCGATAC 390422 28 100.0 32 ............................ TACGGCTTAGAAGTGCCTTAATATACTAAAAT 390482 28 100.0 32 ............................ TGTCATTGTATCGCCCGATTTTTTTACCGCTC 390542 28 100.0 32 ............................ CGATTAACACATATTTAATGGATAAAAATTCA 390602 27 92.9 0 ........................-..T | A [390622] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : CACAGCGATAGACGATAGCATGTCAGACACAATTAAGAACGGGGACACATTGTTGGTTAGTATTCACAATGATACAGAACAATCAAAAGTGCTAGATGGTATTTATATTATATTATTCAATGGCGTTATAATGGTAAAAAGACTGCAATATAATCCAGTCCAAGCATCGTATAACGTTATAAGTGATAATCAGCATTACGACACATTTACCGTAACCCCAAAAGAAGAACCAAGCTTTAAAGTAATTGCAAAACTAGAAAGAGTATTATCAAAAAAATAGATTTTTAAATTATTTTTAAATGCAATTTAAACGGCTGACTCGCTTTACTATATTCAACGAAAATTCAAGCCGTTTTATATTCTATTTTCATTTTGACTTTTTAGCCGTTTTATTTTTTTCAATTCTCTACAATCCCTTTCACCACCAAGCTTAATCCCATTTATTCCCGCAAATTTTTATATATTCCCTAATTTTTATTATCAGTGAATCATTACATCTA # Right flank : TTTTAAGTCATTACATTATGTTGACGAAAGAGATTGAAGGTCATGTCAAATATGCTTTTTTGACAAGGCTATTTATGTTCTAAAACAAATAATTGATAATCTATAAATAATTAACGTGAAAAAAACTAGTCGCGTAATGACCAGCTAGTTTCGCTGTCGATGGCAAAAACTAGTGGCTGTGTGTAACCCCTTATTCGAAAATATCCTTTGTATTAAAATCCCCTCAGAAATTATTTAAACCTCTAAACGTTAGTGAGCTAAAACAATTCAATATGACAAAAAGTTGAGAAAAAGGGAGCATGAAATCTTTGATATTGCTAATCATCAGCCCATCGCATATATTACATAAAATATTTACTTCTCTAAAAAGAATAGCCATGACACAAAACATCGATTTGAACGAAATAGATAAGTTTGCAAAACTTGCTTCGCAATGGTGGGATCCCAACGGCCAATGCAAACCATTACATATTATTAATCCATTACGAGTAGATTATATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 397802-398248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 397802 28 100.0 32 ............................ AAAGCGCGAGTTAAATAACTTAGTGCTTTTTC 397862 28 100.0 32 ............................ TGTGGGGTCTATCTCAAGCGCCTTAGTTGCTG 397922 28 100.0 32 ............................ TTTTCATCAAATGCTACCAAAGAACTAAGGAA 397982 28 100.0 32 ............................ TGTGCGCTTCAGCTATATCAATTATCAATTTT 398042 28 100.0 32 ............................ AAATGTAATTATTAACAGGGTTAGAACCACAG 398102 28 100.0 33 ............................ TGATAAACTTTTAACATTTCCATTACTTTCACC 398163 28 92.9 32 .............C....G......... ATAAACAACTCTAGTACAAGATTTAACCCAAC 398223 26 82.1 0 ..........T........--.G.C... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : AGTTAGCTCTAAATATAAAAGTTTATTTCTAGAAAATCAGATTGGAGTGCTTCATTTAGCGACATTAGCAATGTGCTGACAACTGAGAGAGATTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTAGTTTGTCAGGAACAAATCACAGTCGGTGCGTTAACAGCGAACGAAGGCGGAAAGGCAGTCACTTAGTGACCACTTGCGCGGTCGCCATGGTAGTTGGTAAAGAGGGTTCGCGCAAACCCTCTTTACTCGGACGTAAACGCCATATAGAACTAGCTACCAAACAACAAAACGTCCGAAACTAAAAGAACTAAAAAAGTTGAGGAACGGGGTTTTTTGAAACTTAAATTTGTACCCATTTCTAACCCTTTTTTTTGACTTAAAATAAAATGATTAAAAATCAAAATATTAAAAAGTTACTCAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AAGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATTACCTAATATATCTATACTTTTTTCTGCAAGGATTGCATATTTTTAGATAAAAATTATAAATTAAAGGATTAAGAGCATGTTGAGATACCCTTATTTAGGCGCTATTTCTAATTTAATTGTTAATACAACATTGACCAATAAAGAAAATATATCAAGTCACGTCCCTTCAATACAGCAATTATTCATTAATCAGCCAATAAAGCGAAATTCAACGTTTAATAAAACACTACTCAAATATTCATCCTCATTTGGCCAAACAATAGTGAAATTCTTGAAAAAGATTTGTTTATGTTCTATGACTTTTTCAACTATATTTAGCCCTGTATACGCGTTAAGTTCATTTACCACAGAAAGTATAAAAGGTAGTGCACCATATTTAACGCTAGATGATGGTGTCAACAAAATAACGAGTACAGAAGAGCTACTGGCAATTAAATTACCTAATGGTACTGTGATAAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 468844-469111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 468844 28 100.0 32 ............................ ATTTCGAACAATAGCTTGATTAGCTCTAACTT 468904 28 100.0 32 ............................ AGCGAAACGCTCTCAAAAATGTGCGTGGTGCA 468964 28 100.0 32 ............................ TTATGAAATCCCAACAATTCGCCCTACAGAAT 469024 28 100.0 32 ............................ TGATTAAATAACTCGTTAAGTTTCTCTATCTG 469084 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : AATCAGTTCGCTCTAATTATAAAAGTTTATTTCTAGAAAATCAGATTGGAGTGCTTCATTTAGCGACATGAGCAATGTGCTGACAACTGAGAGAGATTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCTGGTGCGTTAAAGCGAACGCAGGCGGAAGGCAGTCATGCAGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGTAAACCCTCTTTGCTCGGATGTAATCACCATATAAAGCTAGCTACCAAACAACAAAACGTCCGAAATTAAAAGAACAAAAAAGTTGAGGAAAGGGTTTTTTAAAACTTAAATTTGTACCCATTTCTAACCCTTTTTTTTGACTTAAAATAAAATGATTAAAAATCAAAATATTAAGAAGTTATTCAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AATAAACAACTCTAGTACAAGATTTAACCCAACATTCACTACCTTGTAGGTATGACAAAAGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATTACCTAATATATCTATACTTTTTTCTGCAAGGATTGCATATTTTTAGATAAAAATTATAAATTAAAGGATTAAGAGCATGTTGAGATACCCTTATTTAGGCGCTATTTCTAATTTAATTGTTAATACAACATTGACCAGTAAAAAAAATATATTGAGTCACGCCCCTTCAATACAGCAATTATTCATTAATCAGCCAATAAAGCGAAATTCAACGTTTAATAAAACACTACTTAAATATTCATCCTCATTTTGCCAAACAATAGTGAAATTCTTGAAAAAGATTTGTTTATGTTCTATGACTTTTTCAACTATATTTAGCCCTGTATACGCGTTAAGTGCATTTACCACAGAAAGTATAAAAGGTAGTGCACCATATTTAACACTAGATGATGGTGTTAGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 472638-473025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 472638 28 100.0 32 ............................ TGATAACGTACATGCACGTTTAAAATCTCTTC 472698 28 100.0 32 ............................ TCTGTTAATCTAATATACGTTGATCCGTCATC 472758 28 100.0 32 ............................ TTGGGTTGATTAGTCTTTCTACGCCAAAGCTT 472818 28 100.0 32 ............................ AATAGCCAGAAAATAAATCACGTTTAGATAAA 472878 28 100.0 32 ............................ CACAGCGGACGTTCAATAACCGTTAAGTCTTT 472938 28 100.0 32 ............................ TGAGTGTATTTAGTCAATATCGCGTTAATTCG 472998 28 96.4 0 .................C.......... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : ATTGTTTTTATAATATTAATGCTTTATATGCCTGCACATCTGAATTTGAAAAATAAAATCCAATTTTATTCTTCTTACTTTTTGTACAGTTTTTCTGGGATAAATTTGTTGTTTTCTTTAATATTTAGTCGATATTTTATAAAGATTTTTTATTCAAAAAGATAGTTGTTTTTTGCTTATTGGATAAAAGAGCAAAGTATTCAATTATTCTAAAAATGCATACCATTAATTAATTGAGATTTCTAGGTAAATTAATTTAATAATATATCTCATTATGAAGAAATGATTGACCATAGAGTAAATAATAAAGGTCGATTATAAAAAATTTGAGGAACGGGTTTTTTGAAATCTAAAGACATCCCATCATTAACCCTTTTTTTTACTTAAAATAAAATTTCTAAAAAATCAATACATTAAAAAATGGCTTAAAAAAAGGGGTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACAACATTTATAGTATATGGGATTCTA # Right flank : ATGGTAATTACGTCATTGCTTGCAAGGTAGGTAGTCACTAAATTCACTCAAACCACCTTGGAACGGTTTTTTATTGCTCTTAACCCTTAAATAACATACCATTAACTAAAAAGGGGATGGTATAAAAAAATTGCTCTTCTTATTATGTCTAATACTTTTATTTAACGAATCATGATTATTTATATTCAGTTATTTACATATCTTAACAAAATCAGCAAAACAAGAATTGCTAAAATTAATGAGTTTATTTATACTTTTCGAATATAATAAAATATATTTTTATTGAAACAAAACAATCGGATATCGTGACAAAGGATTGAAAAAATGTTAAAATACAGTTGTTTAGAGGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCATAATTTAGGATTATTTAGCCGACGAAAGTTAGGTTATTTATTTCAGAATCAAACATTATTTTTCTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 848571-848423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPE010000001.1 Gilliamella sp. W8126 NODE_1_length_866838_cov_285.773510, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 848570 28 100.0 32 ............................ TAACGAGTATTCAACATGACTACAGCACAGAT 848510 28 100.0 32 ............................ CTCATCGCGTTCGTTTTCGTTTTTGGCGTTTC 848450 28 89.3 0 ......................A.A..T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AAGTTTAAAAAGAACCTGTTTTGCAGGTTCTTTTATTTCTTAAATTATTATAAGTAAATCAAAATTTAAATAATCAAATCAGATAAAAGTATATTACTTTATTACAAATCAATATGATGAGTCTTGTTTAGTGACATTAGCAAAGTGCTGACAATTGAGTGAGATTATCATGACAAAGCAGTTGTTTGTCAGGAAAAAATACAGCCAGTGCGTTAAAAGCGAACGATGACGGAAGACAGTTACGCAAACCCTCTTTACTCGGATGTAATCGCCGTATAGAAATAGCCATCAAACAACAAAACGTCCGAAATAGATCGAATAAAAAATTTGAGGAACGGGATTTTTGAAATCTAAAACATCCTATTACTAATTCTTTTTTTTGACTTAAAATAAAATATTTAAAAATCAATATATTGAAGAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAATTAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TCATACAAACCGCCCTAGTGGCGGTTTTTTATTGCTCTAAATTCCTAAATAACATACCATTACCCAAAAAAAGGAGATGGTATGAAGAAGATATTATGTTATTTAATGCTGGTTTTAACTTGTATTTCATTTGATTCGTTGGGCGCTGTAAAAAAAGAAAAATATAATCCCGAAGGTAAAGAGGTGTACATTTTTAATGAATATGATTCTTCTGCTATTGGACGTAAGGTGTATGGCGGATTATATACCTCTCCAAATATATATTCATTATATTATCCACCATACAAAAAATATAAAGGAATGGAAGGTTATTTGGATAAAGAAGTTAAAGTTGGACGTGATACATATCAGAAAATAATTTTAAAAAACGGGGAGGTTTTTTATCTTTCTGACTTAAAATATTATGATGAATTTGAAAGCCTTAAAAACTATAAAAAACGGTTAGAGCAAATTGAGAAGTTTAAAAATATTAAATTTCCTAATATAGATGAATTATCAGT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //