Array 1 5538-4774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJN01000025.1 Gallibacterium anatis strain 18102/2 contig000024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5537 36 100.0 30 .................................... TAAAGGACGGGGAGGATGTCAACTGAAAAG 5471 36 100.0 31 .................................... TAAATAATGGAATTTCAATAAAGCGTCGGCA 5404 36 100.0 30 .................................... CCATTTTTAGGTGATGTAAGTCCCGATAGC 5338 36 100.0 30 .................................... CGTGTGCAAATCCATTACTCATCCCCTTTA 5272 36 100.0 30 .................................... ATTACCCAAATGATTAAACTCGGCTTTTTT 5206 36 100.0 30 .................................... AGAATTTCTGAATTACCTAGCACTTGTACA 5140 36 100.0 30 .................................... AATAACAATCTATAACGTGCGTCCGCCGTG 5074 36 100.0 30 .................................... ATCTACTCAACACAACAATGGCAACAATGT 5008 36 100.0 30 .................................... TTGCTTGCTATCTACTCAACACAACAATGT 4942 36 100.0 30 .................................... TGCGTGGCAAGCATTAAAACCGCATCCACG 4876 36 100.0 31 .................................... GGTATTGGTACATCAAAAGCTACTATACTTG 4809 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Left flank : CCTTTCTCATTTCGCAGTGCTACACTATGCACGTTGCAACGGGTTAGAAACGCTT # Right flank : AGGTAACGAAAAACCCCTTGAAATTCAAGGGGTTTTATTCGTTCTGCAATAAAAAATTTATTGAAAAAAGTTCTATTTTTATCACATAAATTATCTTTTTAGAAAAGAAGCATCTGATCTGAATTCACTTTTTTCTCCTGTAAGTTCAATTCACCTAGCAAAATATTCATAGCGGCAAATTGTTTTTCTGTTACCTCTAAACAACGAATATAACCCTCTTCTGGTAAATTCGCACATAATCTTTTATGATGTTTCTCTAAAGCATCTCTTCCCCTAATAATACGGCTATAAACAGATAGTTGTAACATCTGATAACCATCTTTTAACAAAAATTTTCTAAATTGATTAGCTGCTCTACGTTTAGCTACTGTCGTTACCGGCAAATCGAAAAAAACAATTAGACGCATAAATCTTCCCTCACTCATAATGATATTCCTTTATTGGTAGAATAACTGGTAGTTTTAACATATTAGGATTTTTTGCTAAAACAACTTGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTTCTCATTTCGCAGTGCTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 33281-34023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJN01000015.1 Gallibacterium anatis strain 18102/2 contig000014a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 33281 36 100.0 37 .................................... ATCTGATTGGATCAAGCGGTTTTCAAGTTCAGGGTAC 33354 36 100.0 34 .................................... AGACGCTCCGTTTCATCCATAATTTCCTGCACAA 33424 36 100.0 34 .................................... AGTATTCCATGTACTATATCATCCAGATACTCAG 33494 36 100.0 34 .................................... CTACTTGTACAGCATATTTTAGGCTGCACCTCAT 33564 36 100.0 34 .................................... ATAAATGTTCTTTATCGGTAGTTACTACAATAAC 33634 36 100.0 34 .................................... AACATAAACTCAGGATCTTGCATATCTAAGAGAT 33704 36 100.0 35 .................................... AATTACTTCAATTTCTGTTCTGCCCTTGTAATCCC 33775 36 100.0 35 .................................... CTGCCCCCTTACGCCACTTTTATGGCGTAACATTT 33846 36 100.0 35 .................................... GATATAATTAAGCGGTTTTCGATTTCTGGATAACC 33917 36 100.0 35 .................................... ATTTTTAACCTCCCTATGCTTCCGCTACTTCCCAA 33988 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 98.7 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCATTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 40318-39220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJN01000009.1 Gallibacterium anatis strain 18102/2 contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 40317 32 100.0 35 ................................ GCTAATCTTGCCAATCAAAACATCGCCAAGCGTAG 40250 32 100.0 34 ................................ AATTTCCTTTTCCATAAAGGCTTTAATCGAAGTG 40184 32 100.0 34 ................................ AAAAAATACGAGTGATAAAACAAAAGAATTCGGA 40118 32 100.0 35 ................................ CTCATATGAGAGAGCAACATAAGATTTTATTTCTC 40051 32 100.0 34 ................................ ATACGTTTTTACAGTTAGATGTTAAGACGTGCGT 39985 32 100.0 34 ................................ GGCGCACTTGGACCCCATACAATATCAACACCTA 39919 32 100.0 34 ................................ AAATATGTCGTTTGGCAACGTTTTACCGGAAACA 39853 32 100.0 35 ................................ CTTAGGGAGAATTGCTTTGACTTAGAAAGAGGCAA 39786 32 100.0 35 ................................ TACCCTATGATATAGCTTTCCACATCCCTTAAATG 39719 32 100.0 35 ................................ AAAATTCATTTTTCTTTTATTCAGTAAATTTTCTT 39652 32 100.0 33 ................................ AATGAGGGAAAGCAAAAACTTTCTTTCATTTAA 39587 32 100.0 35 ................................ AACCGCTATTTGTGAATTTTCGGGAATGCCCGGAA 39520 32 100.0 35 ................................ AATCATCTGACAAAGTTCATCACAAAAACCGTCAA 39453 32 100.0 34 ................................ AAGCTCCTGTTTCTGCTGATCGGTAATAGTGTAT 39387 32 100.0 35 ................................ TTCTTCTCTCTCTTCAATTTCTTCAATTTTTTTAT 39320 32 100.0 37 ................................ ACACTGATTTTAATACCCTCTTAACTCGATTAAACAG 39251 32 87.5 0 ............C..............T..GT | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.3 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTTCTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTAAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCACTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGCT # Right flank : CAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //